Wall clock time and date at job start Tue Mar 31 2020 07:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47264 * 2 1 4 4 H 1.08994 * 115.54582 * 29.33790 * 3 2 1 5 5 C 1.52995 * 117.52109 * 243.63229 * 3 2 1 6 6 C 1.52999 * 117.49793 * 175.00122 * 3 2 1 7 7 H 1.09001 * 117.49838 * 0.02562 * 6 3 2 8 8 N 1.46504 * 117.49843 * 215.00860 * 6 3 2 9 9 C 1.34770 * 120.00112 * 155.00024 * 8 6 3 10 10 O 1.21349 * 120.00110 * 359.97438 * 9 8 6 11 11 C 1.49454 * 120.00173 * 180.02562 * 9 8 6 12 12 O 1.21344 * 119.99403 * 353.48103 * 11 9 8 13 13 N 1.34770 * 120.00020 * 173.48493 * 11 9 8 14 14 C 1.46924 * 120.63400 * 352.99745 * 13 11 9 15 15 C 1.53196 * 108.76675 * 126.40480 * 14 13 11 16 16 C 1.53033 * 109.31031 * 54.65728 * 15 14 13 17 17 C 1.53039 * 109.52806 * 298.61231 * 16 15 14 18 18 H 1.08995 * 109.49903 * 301.39229 * 17 16 15 19 19 C 1.50703 * 109.49715 * 181.32323 * 17 16 15 20 20 H 1.08001 * 120.00258 * 0.02562 * 19 17 16 21 21 C 1.37878 * 119.99878 * 180.02562 * 19 17 16 22 22 N 1.31520 * 120.00251 * 359.97438 * 21 19 17 23 23 Si 1.86805 * 120.00106 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47136 * 89.99269 * 23 21 19 25 25 H 1.48498 * 109.46777 * 209.99692 * 23 21 19 26 26 H 1.48501 * 109.46620 * 329.99531 * 23 21 19 27 27 C 1.46922 * 120.62891 * 173.01897 * 13 11 9 28 28 H 1.09004 * 109.47573 * 59.99324 * 1 2 3 29 29 H 1.08999 * 109.47387 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47142 * 299.99672 * 1 2 3 31 31 H 1.09011 * 109.47110 * 240.00553 * 2 1 3 32 32 H 1.08995 * 109.47475 * 120.00809 * 2 1 3 33 33 H 1.08995 * 117.50199 * 145.03374 * 5 3 2 34 34 H 1.09003 * 117.50102 * 0.02562 * 5 3 2 35 35 H 0.96995 * 119.99660 * 335.00299 * 8 6 3 36 36 H 1.09003 * 109.58819 * 246.20292 * 14 13 11 37 37 H 1.08998 * 109.58627 * 6.62198 * 14 13 11 38 38 H 1.09000 * 109.50940 * 294.69815 * 15 14 13 39 39 H 1.09005 * 109.48194 * 174.59958 * 15 14 13 40 40 H 1.09003 * 109.46330 * 178.59915 * 16 15 14 41 41 H 1.09005 * 109.46389 * 58.63130 * 16 15 14 42 42 H 0.96997 * 119.99893 * 180.02562 * 22 21 19 43 43 H 1.09008 * 109.59064 * 113.79969 * 27 13 11 44 44 H 1.09003 * 109.58686 * 353.37545 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1714 0.4818 5 6 2.8438 1.9082 -1.2157 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7718 0.1956 8 7 4.0097 2.8281 0.8704 9 6 5.2313 2.8260 1.4397 10 8 5.9504 1.8548 1.3297 11 6 5.6999 4.0196 2.2075 12 8 5.0329 5.0332 2.2198 13 7 6.8632 3.9701 2.8861 14 6 7.6056 2.7080 3.0083 15 6 9.0433 2.9337 2.5298 16 6 9.6574 4.1013 3.3054 17 6 8.8530 5.3748 3.0344 18 1 8.8523 5.5839 1.9647 19 6 9.4775 6.5307 3.7726 20 1 10.3601 6.3734 4.3747 21 6 8.9219 7.7892 3.6793 22 7 7.8472 7.9809 2.9457 23 14 9.6962 9.2222 4.5938 24 1 10.7078 9.8754 3.7247 25 1 8.6439 10.2060 4.9543 26 1 10.3526 8.7243 5.8293 27 6 7.4130 5.1770 3.5183 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 2.7211 2.9435 -1.5337 34 1 3.0091 1.1869 -2.0161 35 1 3.4348 3.6042 0.9587 36 1 7.6129 2.3878 4.0502 37 1 7.1312 1.9440 2.3924 38 1 9.0404 3.1657 1.4648 39 1 9.6303 2.0320 2.7046 40 1 10.6887 4.2481 2.9845 41 1 9.6373 3.8792 4.3724 42 1 7.4566 8.8663 2.8798 43 1 7.4047 5.0582 4.6018 44 1 6.8116 6.0421 3.2389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330616931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:58 Heat of formation + Delta-G solvation = -62.329121 kcal Electronic energy + Delta-G solvation = -23992.369833 eV Core-core repulsion = 20523.773689 eV Total energy + Delta-G solvation = -3468.596144 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.99658 -40.09274 -38.74536 -38.51918 -35.41877 -34.70332 -33.46302 -32.26360 -31.58180 -27.79666 -26.86902 -25.04268 -24.56062 -23.53042 -22.48699 -21.93539 -21.29130 -20.38016 -18.90117 -18.26215 -18.00489 -17.27155 -16.77159 -16.51721 -16.29994 -15.53795 -15.41834 -15.33993 -15.25406 -14.87249 -14.59379 -14.46226 -13.89568 -13.71281 -13.55598 -13.43969 -13.03717 -12.93006 -12.88808 -12.49951 -12.30603 -12.21724 -12.17041 -12.13974 -11.93080 -11.72316 -11.62846 -11.18485 -11.00433 -10.94839 -10.55566 -10.07793 -9.84409 -9.56357 -8.13211 -6.29664 0.29098 1.27557 1.41876 1.42174 1.52909 2.07569 2.40271 2.51605 2.86328 3.14762 3.25269 3.64556 3.82218 3.98028 4.14224 4.18307 4.27868 4.32812 4.48206 4.53559 4.58027 4.66612 4.73669 4.80851 4.82805 4.94573 5.00035 5.05044 5.15737 5.18311 5.22427 5.23014 5.27935 5.31222 5.39425 5.49797 5.54163 5.56775 5.82892 5.92400 5.97548 6.28456 6.42129 6.71435 6.82231 6.95211 7.40232 8.91007 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027226 B = 0.003288 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.169973 B = 8514.673436 C = 9218.998590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.140 4.140 4 H 0.112 0.888 5 C -0.174 4.174 6 C 0.052 3.948 7 H 0.138 0.862 8 N -0.661 5.661 9 C 0.525 3.475 10 O -0.518 6.518 11 C 0.486 3.514 12 O -0.559 6.559 13 N -0.573 5.573 14 C 0.049 3.951 15 C -0.120 4.120 16 C -0.107 4.107 17 C 0.038 3.962 18 H -0.011 1.011 19 C -0.535 4.535 20 H 0.063 0.937 21 C 0.010 3.990 22 N -0.916 5.916 23 Si 0.960 3.040 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.263 1.263 27 C 0.121 3.879 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.417 0.583 36 H 0.072 0.928 37 H 0.156 0.844 38 H 0.045 0.955 39 H 0.099 0.901 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.261 0.739 43 H 0.045 0.955 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.596 -16.966 -5.812 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.130 4.130 3 C -0.159 4.159 4 H 0.130 0.870 5 C -0.212 4.212 6 C -0.052 4.052 7 H 0.155 0.845 8 N -0.310 5.310 9 C 0.307 3.693 10 O -0.397 6.397 11 C 0.269 3.731 12 O -0.439 6.439 13 N -0.304 5.304 14 C -0.072 4.072 15 C -0.158 4.158 16 C -0.145 4.145 17 C 0.019 3.981 18 H 0.007 0.993 19 C -0.573 4.573 20 H 0.081 0.919 21 C -0.189 4.189 22 N -0.554 5.554 23 Si 0.785 3.215 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.187 1.187 27 C 0.000 4.000 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.139 0.861 35 H 0.254 0.746 36 H 0.090 0.910 37 H 0.172 0.828 38 H 0.064 0.936 39 H 0.117 0.883 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.546 -16.986 -5.915 21.374 hybrid contribution 0.214 1.884 0.514 1.965 sum -11.332 -15.102 -5.402 19.638 Atomic orbital electron populations 1.21737 0.94632 1.02221 1.02011 1.21154 0.96603 0.92512 1.02781 1.23012 0.91570 0.99920 1.01404 0.87034 1.23735 1.01977 1.03756 0.91758 1.22056 0.95882 0.90007 0.97276 0.84470 1.45181 1.15354 1.19495 1.51004 1.19930 0.82704 0.86739 0.79929 1.90262 1.53458 1.35590 1.60354 1.20424 0.82737 0.88551 0.81424 1.90727 1.55676 1.33977 1.63510 1.48466 1.20181 1.12538 1.49264 1.23337 0.93578 0.86315 1.03932 1.21824 0.95598 0.99193 0.99214 1.21566 0.98761 0.94533 0.99616 1.18917 0.91097 0.93455 0.94614 0.99329 1.21487 1.12333 0.93398 1.30113 0.91860 1.25899 0.95320 1.01706 0.95984 1.70053 1.21901 1.23095 1.40383 0.85521 0.78002 0.78782 0.79162 1.20136 1.21150 1.18712 1.21962 0.97775 0.85619 0.94669 0.92307 0.91835 0.92898 0.90560 0.91479 0.88225 0.86079 0.74551 0.90995 0.82796 0.93575 0.88296 0.92753 0.92370 0.92943 0.93679 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.87 71.98 0.71 -0.78 16 2 C -0.09 -1.06 6.22 30.59 0.19 -0.87 16 3 C -0.14 -1.98 5.66 -10.79 -0.06 -2.04 16 4 H 0.11 1.56 8.07 -2.39 -0.02 1.54 16 5 C -0.17 -2.55 10.10 30.59 0.31 -2.24 16 6 C 0.05 1.02 6.15 44.99 0.28 1.29 16 7 H 0.14 2.79 7.40 -2.39 -0.02 2.78 16 8 N -0.66 -16.99 5.56 -443.86 -2.47 -19.46 16 9 C 0.53 17.33 7.78 87.27 0.68 18.01 16 10 O -0.52 -17.18 12.67 -3.24 -0.04 -17.22 16 11 C 0.49 20.28 7.74 87.27 0.68 20.95 16 12 O -0.56 -26.69 15.94 -3.23 -0.05 -26.74 16 13 N -0.57 -24.57 2.97 -820.47 -2.44 -27.00 16 14 C 0.05 1.68 6.27 86.36 0.54 2.23 16 15 C -0.12 -4.13 6.08 30.67 0.19 -3.95 16 16 C -0.11 -4.38 5.11 30.62 0.16 -4.23 16 17 C 0.04 1.98 2.25 -11.46 -0.03 1.96 16 18 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 19 C -0.53 -29.63 8.56 25.60 0.22 -29.42 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 21 C 0.01 0.58 5.30 84.65 0.45 1.03 16 22 N -0.92 -55.02 11.40 21.45 0.24 -54.78 16 23 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 27 C 0.12 6.16 5.38 86.36 0.46 6.62 16 28 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.74 7.88 -2.38 -0.02 0.72 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.12 1.39 8.03 -2.39 -0.02 1.37 16 35 H 0.42 10.28 8.31 -92.71 -0.77 9.51 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.16 5.10 3.78 -78.89 -0.30 4.80 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 42 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.04 2.26 8.14 -2.38 -0.02 2.24 16 44 H 0.08 4.97 5.18 -2.39 -0.01 4.96 16 Total: -1.00 -67.56 354.29 1.98 -65.57 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.06 Total: 24.92 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 4.77 Total: 8.58 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -4.66 Total: -101.24 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.09 Total: -43.96 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -67.56 1.98 -65.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330616931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.243 kcal (2) G-P(sol) polarization free energy of solvation -67.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds