Wall clock time and date at job start Tue Mar 31 2020 07:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47365 * 2 1 4 4 C 1.50703 * 109.46590 * 240.00170 * 2 1 3 5 5 H 1.08000 * 119.99727 * 239.99675 * 4 2 1 6 6 C 1.37874 * 120.00218 * 60.00251 * 4 2 1 7 7 N 1.31509 * 119.99877 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00058 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46668 * 90.00353 * 8 6 4 10 10 H 1.48503 * 109.47210 * 209.99670 * 8 6 4 11 11 H 1.48491 * 109.47306 * 330.00251 * 8 6 4 12 12 C 1.53003 * 109.47095 * 120.00748 * 2 1 3 13 13 N 1.46500 * 109.46635 * 299.99613 * 12 2 1 14 14 C 1.34779 * 119.99682 * 180.02562 * 13 12 2 15 15 O 1.21348 * 120.00137 * 0.02562 * 14 13 12 16 16 C 1.49450 * 119.99562 * 179.97438 * 14 13 12 17 17 O 1.21342 * 120.00338 * 6.80419 * 16 14 13 18 18 N 1.34780 * 119.99809 * 186.80847 * 16 14 13 19 19 C 1.45306 * 118.82082 * 181.49106 * 18 16 14 20 20 C 1.51724 * 111.99301 * 235.89867 * 19 18 16 21 21 C 1.52095 * 112.46221 * 318.65490 * 20 19 18 22 22 H 1.08997 * 115.19548 * 229.71510 * 21 20 19 23 23 C 1.53814 * 115.98001 * 89.31455 * 21 20 19 24 24 C 1.51972 * 121.29934 * 20.48866 * 21 20 19 25 25 H 1.08995 * 115.76885 * 209.54583 * 24 21 20 26 26 C 1.45525 * 118.81492 * 1.46148 * 18 16 14 27 27 H 1.08999 * 109.47261 * 299.99289 * 1 2 3 28 28 H 1.09003 * 109.47448 * 59.99744 * 1 2 3 29 29 H 1.09003 * 109.47771 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47574 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47046 * 300.00502 * 3 2 1 32 32 H 1.09008 * 109.46507 * 59.99972 * 3 2 1 33 33 H 0.97003 * 120.00053 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46988 * 180.02562 * 12 2 1 35 35 H 1.08992 * 109.47335 * 59.99583 * 12 2 1 36 36 H 0.97005 * 120.00338 * 0.02562 * 13 12 2 37 37 H 1.09001 * 108.97423 * 356.54254 * 19 18 16 38 38 H 1.08994 * 108.98001 * 115.25343 * 19 18 16 39 39 H 1.08997 * 108.88457 * 79.42377 * 20 19 18 40 40 H 1.09004 * 108.87991 * 197.88819 * 20 19 18 41 41 H 1.09004 * 117.54123 * 140.03027 * 23 21 20 42 42 H 1.08994 * 117.54163 * 354.75350 * 23 21 20 43 43 H 1.08995 * 109.12058 * 19.65512 * 26 18 16 44 44 H 1.09004 * 109.07526 * 260.54209 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3222 -1.1195 -4.0081 9 1 1.3444 -2.1614 -4.4124 10 1 2.4870 -0.1402 -5.1122 11 1 3.6304 -1.7567 -3.7122 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4911 3.6694 15 8 2.5760 -1.4773 3.7807 16 6 1.3800 0.2137 4.8897 17 8 0.5842 1.1235 4.7828 18 7 1.8151 -0.1612 6.1090 19 6 1.2896 0.5198 7.2802 20 6 2.3935 1.1132 8.1353 21 6 3.5891 0.1825 8.2689 22 1 3.9399 0.0211 9.2882 23 6 4.6784 0.3263 7.1926 24 6 3.8338 -0.9366 7.2703 25 1 4.3477 -1.8153 7.6600 26 6 2.7937 -1.2339 6.2053 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9562 0.8901 33 1 0.7080 1.1609 -3.4844 34 1 3.1299 -0.7210 1.2494 35 1 1.6766 -1.7490 1.2491 36 1 0.9937 0.7577 2.3564 37 1 0.6237 1.3195 6.9561 38 1 0.7214 -0.1919 7.8789 39 1 2.7238 2.0494 7.6853 40 1 1.9964 1.3222 9.1287 41 1 5.7175 0.2583 7.5149 42 1 4.4847 1.0121 6.3679 43 1 3.2917 -1.3503 5.2427 44 1 2.2810 -2.1624 6.4565 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330622200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:29 Heat of formation + Delta-G solvation = -32.583804 kcal Electronic energy + Delta-G solvation = -24420.087710 eV Core-core repulsion = 20952.781420 eV Total energy + Delta-G solvation = -3467.306290 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.07759 -39.16394 -38.06372 -36.59470 -34.73198 -33.33473 -31.95729 -30.92277 -27.31292 -26.31211 -25.73991 -25.38035 -24.67745 -22.61141 -21.72636 -20.38272 -19.15922 -18.58279 -17.49662 -17.04207 -16.22658 -15.97927 -15.57603 -15.37565 -14.96551 -14.69154 -14.34958 -14.17834 -13.80732 -13.25403 -13.02759 -13.00445 -12.91694 -12.56350 -12.24307 -11.95878 -11.73380 -11.42271 -11.31069 -11.18674 -10.96576 -10.89814 -10.71569 -10.42155 -10.22790 -10.19614 -10.08442 -9.67346 -9.43111 -8.98055 -8.84084 -8.79680 -8.54762 -8.38327 -6.04047 -4.15036 1.60304 2.50292 3.27231 3.34514 3.37440 3.37972 3.45678 3.76167 4.34616 4.37890 4.60087 4.63621 4.68734 4.87152 5.00695 5.01207 5.22685 5.27387 5.54758 5.58571 5.62115 5.72367 5.75037 5.93526 5.96915 6.04372 6.08025 6.20660 6.37195 6.44996 6.67057 6.83232 6.84291 6.92238 6.98401 7.03569 7.31316 7.53269 7.59113 7.68065 7.94268 7.98393 8.10597 8.28927 8.38198 8.85194 9.51055 10.97353 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032350 B = 0.003311 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.322929 B = 8453.387886 C = 8828.807139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.127 3.873 13 N -0.676 5.676 14 C 0.497 3.503 15 O -0.524 6.524 16 C 0.503 3.497 17 O -0.523 6.523 18 N -0.576 5.576 19 C 0.105 3.895 20 C -0.102 4.102 21 C -0.152 4.152 22 H 0.103 0.897 23 C -0.179 4.179 24 C -0.149 4.149 25 H 0.110 0.890 26 C 0.094 3.906 27 H 0.008 0.992 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.008 0.992 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.411 0.589 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.154 0.846 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.115 -0.404 19.426 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.005 3.995 13 N -0.326 5.326 14 C 0.277 3.723 15 O -0.405 6.405 16 C 0.286 3.714 17 O -0.399 6.399 18 N -0.309 5.309 19 C -0.018 4.018 20 C -0.140 4.140 21 C -0.171 4.171 22 H 0.121 0.879 23 C -0.216 4.216 24 C -0.168 4.168 25 H 0.128 0.872 26 C -0.027 4.027 27 H 0.027 0.973 28 H 0.106 0.894 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.249 0.751 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.170 0.830 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.093 -0.486 19.274 19.526 hybrid contribution 0.150 -0.143 -0.629 0.662 sum 3.243 -0.628 18.645 18.935 Atomic orbital electron populations 1.21860 0.97567 0.99318 1.00417 1.18383 0.92991 0.92854 0.90258 1.21856 0.98611 0.98259 1.00385 1.20946 1.31749 1.12191 0.89764 0.92325 1.24882 0.94823 0.94886 0.98887 1.69806 1.36466 1.22646 1.23323 0.86554 0.79298 0.79367 0.82544 1.20699 1.21262 1.19883 1.21980 0.98597 0.96116 0.82807 1.46266 1.49992 1.31264 1.05127 1.19964 0.82048 0.85211 0.85034 1.90417 1.38336 1.26662 1.85058 1.20490 0.82239 0.83690 0.84982 1.90732 1.33780 1.29132 1.86211 1.47147 1.42183 1.36399 1.05186 1.20964 0.96179 0.98247 0.86387 1.20959 0.94496 0.98156 1.00359 1.21999 0.98023 1.01545 0.95512 0.87929 1.23123 0.96109 1.00886 1.01448 1.22095 1.00955 0.93906 0.99796 0.87174 1.21973 0.89027 0.88114 1.03601 0.97258 0.89427 0.95327 0.95330 0.89426 0.97324 0.92923 0.91861 0.91849 0.75111 0.88337 0.91448 0.91260 0.90201 0.88720 0.88893 0.83000 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 4 C -0.51 -13.03 8.01 -34.44 -0.28 -13.31 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.44 9.35 55.43 0.52 -22.92 16 8 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.13 2.59 4.50 -4.04 -0.02 2.57 16 13 N -0.68 -12.35 4.95 -60.73 -0.30 -12.65 16 14 C 0.50 8.58 7.73 -11.58 -0.09 8.49 16 15 O -0.52 -9.43 12.96 5.50 0.07 -9.36 16 16 C 0.50 7.97 7.69 -11.58 -0.09 7.88 16 17 O -0.52 -9.19 15.67 5.50 0.09 -9.10 16 18 N -0.58 -7.51 2.97 -177.42 -0.53 -8.03 16 19 C 0.10 1.12 6.31 -5.33 -0.03 1.08 16 20 C -0.10 -0.89 5.97 -27.84 -0.17 -1.06 16 21 C -0.15 -1.34 6.17 -91.18 -0.56 -1.90 16 22 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 23 C -0.18 -1.73 9.94 -26.75 -0.27 -2.00 16 24 C -0.15 -1.46 5.99 -92.19 -0.55 -2.01 16 25 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 26 C 0.09 1.13 5.75 -5.17 -0.03 1.10 16 27 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 28 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 32 H 0.01 0.16 6.86 -51.92 -0.36 -0.19 16 33 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.41 7.47 5.65 -40.82 -0.23 7.24 16 37 H 0.10 1.14 6.72 -51.93 -0.35 0.79 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.15 2.16 4.31 -55.80 -0.24 1.92 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -27.10 342.85 -8.43 -35.53 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.77 Total: 7.71 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.65 Total: -1.77 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.31 Total: -43.60 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.16 Total: -18.46 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.10 -8.43 -35.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330622200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.949 kcal (2) G-P(sol) polarization free energy of solvation -27.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds