Wall clock time and date at job start Tue Mar 31 2020 07:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47365 * 2 1 4 4 C 1.50703 * 109.46590 * 240.00170 * 2 1 3 5 5 H 1.08000 * 119.99727 * 239.99675 * 4 2 1 6 6 C 1.37874 * 120.00218 * 60.00251 * 4 2 1 7 7 N 1.31509 * 119.99877 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00058 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46668 * 90.00353 * 8 6 4 10 10 H 1.48503 * 109.47210 * 209.99670 * 8 6 4 11 11 H 1.48491 * 109.47306 * 330.00251 * 8 6 4 12 12 C 1.53003 * 109.47095 * 120.00748 * 2 1 3 13 13 N 1.46500 * 109.46635 * 299.99613 * 12 2 1 14 14 C 1.34779 * 119.99682 * 180.02562 * 13 12 2 15 15 O 1.21348 * 120.00137 * 0.02562 * 14 13 12 16 16 C 1.49450 * 119.99562 * 179.97438 * 14 13 12 17 17 O 1.21342 * 120.00338 * 6.80419 * 16 14 13 18 18 N 1.34780 * 119.99809 * 186.80847 * 16 14 13 19 19 C 1.45306 * 118.82082 * 181.49106 * 18 16 14 20 20 C 1.51724 * 111.99301 * 235.89867 * 19 18 16 21 21 C 1.52095 * 112.46221 * 318.65490 * 20 19 18 22 22 H 1.08997 * 115.19548 * 229.71510 * 21 20 19 23 23 C 1.53814 * 115.98001 * 89.31455 * 21 20 19 24 24 C 1.51972 * 121.29934 * 20.48866 * 21 20 19 25 25 H 1.08995 * 115.76885 * 209.54583 * 24 21 20 26 26 C 1.45525 * 118.81492 * 1.46148 * 18 16 14 27 27 H 1.08999 * 109.47261 * 299.99289 * 1 2 3 28 28 H 1.09003 * 109.47448 * 59.99744 * 1 2 3 29 29 H 1.09003 * 109.47771 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47574 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47046 * 300.00502 * 3 2 1 32 32 H 1.09008 * 109.46507 * 59.99972 * 3 2 1 33 33 H 0.97003 * 120.00053 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46988 * 180.02562 * 12 2 1 35 35 H 1.08992 * 109.47335 * 59.99583 * 12 2 1 36 36 H 0.97005 * 120.00338 * 0.02562 * 13 12 2 37 37 H 1.09001 * 108.97423 * 356.54254 * 19 18 16 38 38 H 1.08994 * 108.98001 * 115.25343 * 19 18 16 39 39 H 1.08997 * 108.88457 * 79.42377 * 20 19 18 40 40 H 1.09004 * 108.87991 * 197.88819 * 20 19 18 41 41 H 1.09004 * 117.54123 * 140.03027 * 23 21 20 42 42 H 1.08994 * 117.54163 * 354.75350 * 23 21 20 43 43 H 1.08995 * 109.12058 * 19.65512 * 26 18 16 44 44 H 1.09004 * 109.07526 * 260.54209 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3222 -1.1195 -4.0081 9 1 1.3444 -2.1614 -4.4124 10 1 2.4870 -0.1402 -5.1122 11 1 3.6304 -1.7567 -3.7122 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4911 3.6694 15 8 2.5760 -1.4773 3.7807 16 6 1.3800 0.2137 4.8897 17 8 0.5842 1.1235 4.7828 18 7 1.8151 -0.1612 6.1090 19 6 1.2896 0.5198 7.2802 20 6 2.3935 1.1132 8.1353 21 6 3.5891 0.1825 8.2689 22 1 3.9399 0.0211 9.2882 23 6 4.6784 0.3263 7.1926 24 6 3.8338 -0.9366 7.2703 25 1 4.3477 -1.8153 7.6600 26 6 2.7937 -1.2339 6.2053 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9562 0.8901 33 1 0.7080 1.1609 -3.4844 34 1 3.1299 -0.7210 1.2494 35 1 1.6766 -1.7490 1.2491 36 1 0.9937 0.7577 2.3564 37 1 0.6237 1.3195 6.9561 38 1 0.7214 -0.1919 7.8789 39 1 2.7238 2.0494 7.6853 40 1 1.9964 1.3222 9.1287 41 1 5.7175 0.2583 7.5149 42 1 4.4847 1.0121 6.3679 43 1 3.2917 -1.3503 5.2427 44 1 2.2810 -2.1624 6.4565 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330622200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:28 Heat of formation + Delta-G solvation = -47.818181 kcal Electronic energy + Delta-G solvation = -24420.748322 eV Core-core repulsion = 20952.781420 eV Total energy + Delta-G solvation = -3467.966902 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.26224 -40.33535 -39.23401 -38.27166 -35.85949 -34.91112 -32.82919 -32.73904 -28.49436 -27.66445 -27.59690 -27.17849 -25.89371 -23.81057 -22.49629 -21.64471 -20.72544 -19.86165 -18.59327 -18.27335 -17.76031 -17.35394 -16.85301 -16.70362 -16.34504 -16.11438 -15.55260 -15.30105 -15.11806 -14.77889 -14.47741 -14.29735 -14.05586 -13.82178 -13.67794 -13.21882 -13.12066 -12.74821 -12.70209 -12.59445 -12.57805 -12.41316 -12.28035 -12.11932 -11.76423 -11.51588 -11.30132 -11.01812 -10.89347 -10.72939 -10.41811 -10.23799 -10.06707 -9.73534 -8.01444 -6.18114 0.28826 1.29463 1.44883 1.47974 1.55968 2.05559 2.40169 2.50744 2.80587 3.22622 3.27117 3.61157 3.86879 3.92935 4.11341 4.20410 4.24105 4.33615 4.47029 4.47449 4.65542 4.67751 4.81164 4.84070 4.88373 4.97538 5.00349 5.03026 5.06448 5.08230 5.16373 5.17637 5.24873 5.35804 5.41512 5.54230 5.63913 5.67567 5.89176 6.10403 6.18076 6.25203 6.40848 6.67964 6.85542 6.92978 7.50094 8.97847 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032350 B = 0.003311 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.322929 B = 8453.387886 C = 8828.807139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.050 3.950 3 C -0.123 4.123 4 C -0.526 4.526 5 H 0.053 0.947 6 C 0.026 3.974 7 N -0.902 5.902 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.143 3.857 13 N -0.679 5.679 14 C 0.497 3.503 15 O -0.532 6.532 16 C 0.503 3.497 17 O -0.545 6.545 18 N -0.565 5.565 19 C 0.099 3.901 20 C -0.100 4.100 21 C -0.139 4.139 22 H 0.127 0.873 23 C -0.188 4.188 24 C -0.154 4.154 25 H 0.130 0.870 26 C 0.092 3.908 27 H 0.028 0.972 28 H 0.063 0.937 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.063 0.937 32 H 0.028 0.972 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.412 0.588 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.131 0.869 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.635 -0.865 21.687 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 C -0.181 4.181 4 C -0.565 4.565 5 H 0.071 0.929 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.020 3.980 13 N -0.330 5.330 14 C 0.279 3.721 15 O -0.412 6.412 16 C 0.285 3.715 17 O -0.423 6.423 18 N -0.297 5.297 19 C -0.023 4.023 20 C -0.138 4.138 21 C -0.158 4.158 22 H 0.145 0.855 23 C -0.225 4.225 24 C -0.173 4.173 25 H 0.148 0.852 26 C -0.029 4.029 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.250 0.750 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.089 0.911 43 H 0.147 0.853 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.630 -0.961 21.577 21.901 hybrid contribution 0.008 -0.020 -1.255 1.256 sum 3.639 -0.981 20.322 20.668 Atomic orbital electron populations 1.21708 0.97434 0.98891 1.00142 1.18380 0.93078 0.93000 0.90586 1.21700 0.98240 0.98046 1.00120 1.21250 1.31805 1.12291 0.91113 0.92899 1.25502 0.95125 0.95545 1.01190 1.69928 1.37043 1.23424 1.23632 0.85704 0.78772 0.78345 0.79657 1.20545 1.21164 1.19650 1.21578 0.98048 0.95541 0.82799 1.46114 1.50486 1.31396 1.04996 1.20267 0.81553 0.85067 0.85220 1.90449 1.38383 1.26955 1.85414 1.20168 0.82423 0.83567 0.85326 1.90724 1.35020 1.30123 1.86477 1.47286 1.41442 1.36056 1.04950 1.21217 0.97013 0.98377 0.85697 1.20994 0.93973 0.97509 1.01314 1.22141 0.97248 1.00121 0.96265 0.85481 1.23138 0.97369 1.00454 1.01559 1.22090 1.00547 0.94950 0.99698 0.85201 1.21908 0.89366 0.88204 1.03439 0.95295 0.91815 0.95753 0.95687 0.91840 0.95315 0.93071 0.92437 0.92505 0.75012 0.89417 0.89418 0.92214 0.87256 0.87232 0.91132 0.85275 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.08 71.98 0.58 -5.08 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.60 8.08 71.98 0.58 -5.02 16 4 C -0.53 -27.22 8.01 25.60 0.21 -27.02 16 5 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 6 C 0.03 1.36 5.15 84.65 0.44 1.80 16 7 N -0.90 -48.34 9.35 21.45 0.20 -48.14 16 8 Si 0.95 42.07 29.54 68.60 2.03 44.10 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 C 0.14 5.86 4.50 86.38 0.39 6.25 16 13 N -0.68 -24.71 4.95 -464.42 -2.30 -27.01 16 14 C 0.50 17.08 7.73 87.27 0.67 17.75 16 15 O -0.53 -19.04 12.96 -3.24 -0.04 -19.08 16 16 C 0.50 15.68 7.69 87.27 0.67 16.35 16 17 O -0.55 -18.97 15.67 -3.22 -0.05 -19.02 16 18 N -0.57 -14.02 2.97 -833.60 -2.48 -16.50 16 19 C 0.10 1.89 6.31 86.18 0.54 2.43 16 20 C -0.10 -1.46 5.97 29.88 0.18 -1.29 16 21 C -0.14 -1.99 6.17 -11.16 -0.07 -2.06 16 22 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 23 C -0.19 -3.29 9.94 30.58 0.30 -2.98 16 24 C -0.15 -2.64 5.99 -11.81 -0.07 -2.71 16 25 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 26 C 0.09 2.07 5.75 86.17 0.50 2.57 16 27 H 0.03 1.16 6.86 -2.39 -0.02 1.15 16 28 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 32 H 0.03 1.14 6.86 -2.38 -0.02 1.13 16 33 H 0.26 13.45 8.31 -92.71 -0.77 12.67 16 34 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.41 14.84 5.65 -92.70 -0.52 14.32 16 37 H 0.09 1.92 6.72 -2.39 -0.02 1.90 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.02 8.05 -2.39 -0.02 1.00 16 40 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 43 H 0.13 3.61 4.31 -63.68 -0.27 3.34 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -57.84 342.85 2.47 -55.37 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.22 Total: 26.98 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 4.89 Total: 3.30 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -4.57 Total: -91.65 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.09 Total: -38.10 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -57.84 2.47 -55.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330622200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.550 kcal (2) G-P(sol) polarization free energy of solvation -57.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds