Wall clock time and date at job start Tue Mar 31 2020 07:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46959 * 2 1 4 4 C 1.50694 * 109.47240 * 240.00443 * 2 1 3 5 5 H 1.08000 * 119.99846 * 238.04541 * 4 2 1 6 6 C 1.37882 * 120.00242 * 58.04176 * 4 2 1 7 7 N 1.31512 * 119.99688 * 2.88138 * 6 4 2 8 8 Si 1.86799 * 120.00062 * 182.88209 * 6 4 2 9 9 H 1.48501 * 109.47063 * 94.98329 * 8 6 4 10 10 H 1.48501 * 109.47311 * 214.98248 * 8 6 4 11 11 H 1.48499 * 109.47220 * 334.98923 * 8 6 4 12 12 C 1.52996 * 109.47552 * 119.99817 * 2 1 3 13 13 N 1.46508 * 109.47147 * 300.00628 * 12 2 1 14 14 C 1.34774 * 119.99761 * 179.97438 * 13 12 2 15 15 O 1.21351 * 119.99824 * 0.02562 * 14 13 12 16 16 C 1.49448 * 119.99982 * 179.97438 * 14 13 12 17 17 O 1.21352 * 119.99944 * 6.77572 * 16 14 13 18 18 N 1.34780 * 120.00221 * 186.77269 * 16 14 13 19 19 C 1.45236 * 118.92086 * 181.28608 * 18 16 14 20 20 C 1.51705 * 112.04587 * 236.01014 * 19 18 16 21 21 C 1.51271 * 112.86826 * 318.06613 * 20 19 18 22 22 H 1.09002 * 114.34050 * 163.77445 * 21 20 19 23 23 C 1.52110 * 120.85643 * 308.68464 * 21 20 19 24 24 C 1.51971 * 120.67355 * 20.80638 * 21 20 19 25 25 H 1.09000 * 117.35110 * 142.21793 * 24 21 20 26 26 C 1.45530 * 118.82867 * 1.22259 * 18 16 14 27 27 H 1.09000 * 109.47178 * 294.05291 * 1 2 3 28 28 H 1.08998 * 109.47746 * 54.05168 * 1 2 3 29 29 H 1.09006 * 109.47146 * 174.05414 * 1 2 3 30 30 H 1.08993 * 109.46971 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47078 * 300.00590 * 3 2 1 32 32 H 1.08999 * 109.46995 * 60.00085 * 3 2 1 33 33 H 0.97002 * 119.99583 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47713 * 180.02562 * 12 2 1 35 35 H 1.09006 * 109.46864 * 59.99907 * 12 2 1 36 36 H 0.96990 * 119.99678 * 359.97438 * 13 12 2 37 37 H 1.09005 * 109.04835 * 115.28685 * 19 18 16 38 38 H 1.09004 * 108.86569 * 356.61413 * 19 18 16 39 39 H 1.09002 * 108.78415 * 197.22329 * 20 19 18 40 40 H 1.09004 * 108.78340 * 78.91127 * 20 19 18 41 41 H 1.08997 * 117.54129 * 217.65290 * 23 21 20 42 42 H 1.09006 * 117.54253 * 2.83829 * 23 21 20 43 43 H 1.09001 * 109.21393 * 20.14618 * 26 18 16 44 44 H 1.08991 * 109.22243 * 260.81332 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6790 -1.5696 -1.1317 6 6 1.6663 -0.2632 -2.4824 7 7 0.9253 0.8165 -2.6043 8 14 2.2229 -1.1910 -4.0051 9 1 1.1601 -2.1406 -4.4222 10 1 2.4844 -0.2271 -5.1041 11 1 3.4664 -1.9429 -3.6997 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5747 -1.4779 3.7807 16 6 1.3792 0.2134 4.8898 17 8 0.5843 1.1241 4.7827 18 7 1.8131 -0.1625 6.1092 19 6 1.2926 0.5197 7.2810 20 6 2.3991 1.1104 8.1343 21 6 3.5852 0.1835 8.2831 22 1 4.4923 0.6689 8.6432 23 6 3.3971 -1.2590 8.7277 24 6 3.8230 -0.9377 7.2851 25 1 4.8555 -1.1517 7.0089 26 6 2.7866 -1.2399 6.2063 27 1 -0.3633 0.4189 0.9384 28 1 -0.3634 0.6033 -0.8319 29 1 -0.3634 -1.0222 -0.1065 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 0.6675 1.1308 -3.4850 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.9943 0.7581 2.3564 37 1 0.7223 -0.1892 7.8813 38 1 0.6290 1.3212 6.9564 39 1 1.9994 1.3308 9.1241 40 1 2.7359 2.0410 7.6773 41 1 4.1493 -1.6836 9.3925 42 1 2.3770 -1.6083 8.8873 43 1 3.2908 -1.3553 5.2469 44 1 2.2714 -2.1679 6.4539 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330622202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:32 Heat of formation + Delta-G solvation = -32.923132 kcal Electronic energy + Delta-G solvation = -24316.900105 eV Core-core repulsion = 20849.579101 eV Total energy + Delta-G solvation = -3467.321004 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06959 -39.22693 -38.07444 -36.59859 -34.73037 -33.31737 -31.94398 -30.92016 -27.16810 -26.33222 -25.74038 -25.42909 -24.81876 -22.67128 -21.74526 -20.38305 -19.11626 -18.52391 -17.38233 -17.09191 -16.16517 -15.90893 -15.83188 -15.41379 -14.83940 -14.63924 -14.52562 -14.19823 -13.78891 -13.38264 -13.13312 -12.93423 -12.79113 -12.62707 -12.25552 -11.98626 -11.69988 -11.44715 -11.23619 -11.18450 -11.00282 -10.88971 -10.69472 -10.41244 -10.24260 -10.20929 -10.11053 -9.66343 -9.44091 -9.01723 -8.82649 -8.79735 -8.54083 -8.38395 -6.04252 -4.14422 1.61097 2.50326 3.27122 3.34809 3.36491 3.38214 3.45082 3.77497 4.37470 4.41833 4.52311 4.56662 4.69657 4.79115 4.94932 4.99133 5.22977 5.26455 5.46094 5.55891 5.67412 5.73482 5.83670 5.86017 5.91384 6.00575 6.08355 6.20953 6.35286 6.45122 6.67709 6.82964 6.84727 6.92266 6.98278 7.04052 7.31619 7.53988 7.59495 7.68744 7.94704 7.97388 8.10419 8.28977 8.38316 8.85777 9.51478 10.97724 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035108 B = 0.003201 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.352379 B = 8745.779581 C = 9180.569286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.509 4.509 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.127 3.873 13 N -0.676 5.676 14 C 0.497 3.503 15 O -0.525 6.525 16 C 0.504 3.496 17 O -0.523 6.523 18 N -0.575 5.575 19 C 0.104 3.896 20 C -0.101 4.101 21 C -0.136 4.136 22 H 0.099 0.901 23 C -0.180 4.180 24 C -0.163 4.163 25 H 0.114 0.886 26 C 0.095 3.905 27 H 0.008 0.992 28 H 0.084 0.916 29 H 0.030 0.970 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.008 0.992 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.411 0.589 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.152 0.848 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.821 -0.653 19.865 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.005 3.995 13 N -0.327 5.327 14 C 0.278 3.722 15 O -0.405 6.405 16 C 0.287 3.713 17 O -0.399 6.399 18 N -0.308 5.308 19 C -0.019 4.019 20 C -0.139 4.139 21 C -0.155 4.155 22 H 0.118 0.882 23 C -0.217 4.217 24 C -0.182 4.182 25 H 0.132 0.868 26 C -0.026 4.026 27 H 0.027 0.973 28 H 0.103 0.897 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.168 0.832 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.793 -0.744 19.711 19.922 hybrid contribution 0.105 -0.184 -0.645 0.679 sum 2.898 -0.929 19.065 19.307 Atomic orbital electron populations 1.21845 0.97520 1.00283 0.99336 1.18381 0.92992 0.92827 0.90279 1.21865 0.98622 0.98261 1.00333 1.20954 1.30336 1.13677 0.89789 0.92302 1.24883 0.94871 0.94812 0.98872 1.69829 1.36832 1.22230 1.23312 0.86544 0.79021 0.79626 0.82598 1.20752 1.21269 1.19847 1.21969 0.98586 0.96134 0.82808 1.46267 1.50037 1.31243 1.05127 1.19949 0.82028 0.85194 0.85020 1.90422 1.38372 1.26645 1.85099 1.20483 0.82174 0.83704 0.84967 1.90733 1.33817 1.29140 1.86214 1.47106 1.42538 1.36042 1.05139 1.20980 0.96321 0.98260 0.86356 1.20722 0.94478 0.98483 1.00232 1.21463 1.00148 0.90756 1.03129 0.88239 1.23126 1.02597 0.98190 0.97791 1.22657 1.00613 1.04073 0.90855 0.86831 1.22202 0.89114 0.87857 1.03445 0.97285 0.89732 0.95084 0.95332 0.89480 0.97335 0.92955 0.91865 0.91833 0.75102 0.91677 0.88194 0.90179 0.90995 0.88765 0.88786 0.83190 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.04 37.16 0.30 -2.70 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -3.01 8.10 37.16 0.30 -2.71 16 4 C -0.51 -13.08 8.01 -34.44 -0.28 -13.36 16 5 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 6 C 0.07 1.75 5.14 -17.82 -0.09 1.66 16 7 N -0.88 -23.47 9.43 55.43 0.52 -22.95 16 8 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.13 2.59 4.50 -4.04 -0.02 2.57 16 13 N -0.68 -12.37 4.90 -60.73 -0.30 -12.66 16 14 C 0.50 8.61 7.73 -11.59 -0.09 8.52 16 15 O -0.53 -9.46 12.96 5.50 0.07 -9.39 16 16 C 0.50 8.01 7.69 -11.58 -0.09 7.92 16 17 O -0.52 -9.20 15.68 5.50 0.09 -9.12 16 18 N -0.58 -7.54 3.01 -176.99 -0.53 -8.07 16 19 C 0.10 1.10 6.05 -5.38 -0.03 1.07 16 20 C -0.10 -0.88 6.09 -28.26 -0.17 -1.05 16 21 C -0.14 -1.19 5.91 -92.47 -0.55 -1.74 16 22 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 23 C -0.18 -1.46 9.77 -26.77 -0.26 -1.72 16 24 C -0.16 -1.60 6.34 -90.92 -0.58 -2.18 16 25 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 26 C 0.09 1.15 5.63 -4.76 -0.03 1.12 16 27 H 0.01 0.17 6.71 -51.93 -0.35 -0.18 16 28 H 0.08 2.11 6.22 -51.93 -0.32 1.79 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 2.18 6.12 -51.93 -0.32 1.86 16 32 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 33 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.41 7.48 5.65 -40.82 -0.23 7.25 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.16 6.72 -51.93 -0.35 0.81 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 43 H 0.15 2.13 4.34 -55.71 -0.24 1.89 16 44 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 LS Contribution 342.68 15.07 5.16 5.16 Total: -1.00 -27.20 342.68 -8.44 -35.65 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.78 Total: 7.32 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.66 Total: -1.39 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.31 Total: -43.68 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.16 Total: -18.51 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.20 -8.44 -35.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330622202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.725 kcal (2) G-P(sol) polarization free energy of solvation -27.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds