Wall clock time and date at job start Tue Mar 31 2020 07:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46959 * 2 1 4 4 C 1.50694 * 109.47240 * 240.00443 * 2 1 3 5 5 H 1.08000 * 119.99846 * 238.04541 * 4 2 1 6 6 C 1.37882 * 120.00242 * 58.04176 * 4 2 1 7 7 N 1.31512 * 119.99688 * 2.88138 * 6 4 2 8 8 Si 1.86799 * 120.00062 * 182.88209 * 6 4 2 9 9 H 1.48501 * 109.47063 * 94.98329 * 8 6 4 10 10 H 1.48501 * 109.47311 * 214.98248 * 8 6 4 11 11 H 1.48499 * 109.47220 * 334.98923 * 8 6 4 12 12 C 1.52996 * 109.47552 * 119.99817 * 2 1 3 13 13 N 1.46508 * 109.47147 * 300.00628 * 12 2 1 14 14 C 1.34774 * 119.99761 * 179.97438 * 13 12 2 15 15 O 1.21351 * 119.99824 * 0.02562 * 14 13 12 16 16 C 1.49448 * 119.99982 * 179.97438 * 14 13 12 17 17 O 1.21352 * 119.99944 * 6.77572 * 16 14 13 18 18 N 1.34780 * 120.00221 * 186.77269 * 16 14 13 19 19 C 1.45236 * 118.92086 * 181.28608 * 18 16 14 20 20 C 1.51705 * 112.04587 * 236.01014 * 19 18 16 21 21 C 1.51271 * 112.86826 * 318.06613 * 20 19 18 22 22 H 1.09002 * 114.34050 * 163.77445 * 21 20 19 23 23 C 1.52110 * 120.85643 * 308.68464 * 21 20 19 24 24 C 1.51971 * 120.67355 * 20.80638 * 21 20 19 25 25 H 1.09000 * 117.35110 * 142.21793 * 24 21 20 26 26 C 1.45530 * 118.82867 * 1.22259 * 18 16 14 27 27 H 1.09000 * 109.47178 * 294.05291 * 1 2 3 28 28 H 1.08998 * 109.47746 * 54.05168 * 1 2 3 29 29 H 1.09006 * 109.47146 * 174.05414 * 1 2 3 30 30 H 1.08993 * 109.46971 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47078 * 300.00590 * 3 2 1 32 32 H 1.08999 * 109.46995 * 60.00085 * 3 2 1 33 33 H 0.97002 * 119.99583 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47713 * 180.02562 * 12 2 1 35 35 H 1.09006 * 109.46864 * 59.99907 * 12 2 1 36 36 H 0.96990 * 119.99678 * 359.97438 * 13 12 2 37 37 H 1.09005 * 109.04835 * 115.28685 * 19 18 16 38 38 H 1.09004 * 108.86569 * 356.61413 * 19 18 16 39 39 H 1.09002 * 108.78415 * 197.22329 * 20 19 18 40 40 H 1.09004 * 108.78340 * 78.91127 * 20 19 18 41 41 H 1.08997 * 117.54129 * 217.65290 * 23 21 20 42 42 H 1.09006 * 117.54253 * 2.83829 * 23 21 20 43 43 H 1.09001 * 109.21393 * 20.14618 * 26 18 16 44 44 H 1.08991 * 109.22243 * 260.81332 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6790 -1.5696 -1.1317 6 6 1.6663 -0.2632 -2.4824 7 7 0.9253 0.8165 -2.6043 8 14 2.2229 -1.1910 -4.0051 9 1 1.1601 -2.1406 -4.4222 10 1 2.4844 -0.2271 -5.1041 11 1 3.4664 -1.9429 -3.6997 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5747 -1.4779 3.7807 16 6 1.3792 0.2134 4.8898 17 8 0.5843 1.1241 4.7827 18 7 1.8131 -0.1625 6.1092 19 6 1.2926 0.5197 7.2810 20 6 2.3991 1.1104 8.1343 21 6 3.5852 0.1835 8.2831 22 1 4.4923 0.6689 8.6432 23 6 3.3971 -1.2590 8.7277 24 6 3.8230 -0.9377 7.2851 25 1 4.8555 -1.1517 7.0089 26 6 2.7866 -1.2399 6.2063 27 1 -0.3633 0.4189 0.9384 28 1 -0.3634 0.6033 -0.8319 29 1 -0.3634 -1.0222 -0.1065 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 0.6675 1.1308 -3.4850 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.9943 0.7581 2.3564 37 1 0.7223 -0.1892 7.8813 38 1 0.6290 1.3212 6.9564 39 1 1.9994 1.3308 9.1241 40 1 2.7359 2.0410 7.6773 41 1 4.1493 -1.6836 9.3925 42 1 2.3770 -1.6083 8.8873 43 1 3.2908 -1.3553 5.2469 44 1 2.2714 -2.1679 6.4539 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330622202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:31 Heat of formation + Delta-G solvation = -48.208802 kcal Electronic energy + Delta-G solvation = -24317.562942 eV Core-core repulsion = 20849.579101 eV Total energy + Delta-G solvation = -3467.983841 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24773 -40.37105 -39.24847 -38.27376 -35.85591 -34.89025 -32.80955 -32.73229 -28.40097 -27.59599 -27.58863 -27.17296 -26.07114 -23.88124 -22.47079 -21.64261 -20.71143 -19.77055 -18.52353 -18.24603 -17.78239 -17.32548 -16.86395 -16.72271 -16.43916 -15.89811 -15.78919 -15.24011 -15.06733 -14.76603 -14.57548 -14.33685 -14.08956 -13.93461 -13.41080 -13.25280 -13.13238 -12.98703 -12.71194 -12.57442 -12.43393 -12.28075 -12.14706 -12.10238 -11.95496 -11.50632 -11.27782 -10.99438 -10.83487 -10.71878 -10.42808 -10.24322 -10.13184 -9.71972 -8.01904 -6.17736 0.29550 1.29586 1.44453 1.47934 1.56112 2.05999 2.40480 2.50948 2.84742 3.22644 3.29473 3.70656 3.78691 3.88936 4.03332 4.17713 4.21224 4.34047 4.46951 4.47728 4.67604 4.76792 4.80983 4.82969 4.93652 4.98572 5.03222 5.03946 5.07942 5.11211 5.16330 5.17870 5.26112 5.29642 5.39900 5.53919 5.64519 5.68288 5.90090 6.09734 6.17970 6.25535 6.40406 6.68346 6.86044 6.93602 7.50291 8.97996 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035108 B = 0.003201 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.352379 B = 8745.779581 C = 9180.569286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.123 4.123 4 C -0.527 4.527 5 H 0.053 0.947 6 C 0.027 3.973 7 N -0.902 5.902 8 Si 0.948 3.052 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.143 3.857 13 N -0.679 5.679 14 C 0.498 3.502 15 O -0.533 6.533 16 C 0.503 3.497 17 O -0.545 6.545 18 N -0.565 5.565 19 C 0.097 3.903 20 C -0.098 4.098 21 C -0.136 4.136 22 H 0.112 0.888 23 C -0.163 4.163 24 C -0.182 4.182 25 H 0.118 0.882 26 C 0.095 3.905 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.412 0.588 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.130 0.870 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.306 -0.962 22.026 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.181 4.181 4 C -0.566 4.566 5 H 0.071 0.929 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.020 3.980 13 N -0.330 5.330 14 C 0.280 3.720 15 O -0.413 6.413 16 C 0.286 3.714 17 O -0.423 6.423 18 N -0.297 5.297 19 C -0.024 4.024 20 C -0.136 4.136 21 C -0.155 4.155 22 H 0.130 0.870 23 C -0.200 4.200 24 C -0.201 4.201 25 H 0.136 0.864 26 C -0.026 4.026 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.250 0.750 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.114 0.886 43 H 0.146 0.854 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.294 -1.069 21.916 22.188 hybrid contribution -0.024 -0.120 -1.230 1.236 sum 3.271 -1.189 20.686 20.977 Atomic orbital electron populations 1.21692 0.97393 0.99448 0.99437 1.18376 0.93068 0.92988 0.90585 1.21709 0.98266 0.98024 1.00090 1.21261 1.30378 1.13768 0.91156 0.92900 1.25502 0.95127 0.95529 1.01166 1.69948 1.37415 1.23018 1.23633 0.85695 0.78580 0.78507 0.79720 1.20620 1.21170 1.19609 1.21569 0.98061 0.95548 0.82801 1.46114 1.50524 1.31372 1.04983 1.20253 0.81531 0.85043 0.85209 1.90455 1.38443 1.26954 1.85450 1.20159 0.82363 0.83588 0.85297 1.90725 1.35012 1.30108 1.86474 1.47243 1.41773 1.35708 1.04935 1.21230 0.97194 0.98355 0.85657 1.20731 0.93871 0.97953 1.01013 1.21577 1.00601 0.91028 1.02247 0.86998 1.23180 1.03144 0.97518 0.96143 1.22600 1.00074 1.06198 0.91186 0.86363 1.22100 0.89362 0.87754 1.03369 0.95194 0.92017 0.95786 0.95665 0.91906 0.95277 0.93088 0.92405 0.92518 0.74979 0.89804 0.89190 0.87548 0.91605 0.87156 0.88557 0.85364 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.04 71.98 0.58 -4.98 16 2 C 0.05 2.33 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.58 8.10 71.98 0.58 -5.00 16 4 C -0.53 -27.29 8.01 25.60 0.21 -27.09 16 5 H 0.05 2.74 7.75 -2.91 -0.02 2.71 16 6 C 0.03 1.39 5.14 84.66 0.44 1.82 16 7 N -0.90 -48.38 9.43 21.45 0.20 -48.18 16 8 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 C 0.14 5.85 4.50 86.38 0.39 6.24 16 13 N -0.68 -24.64 4.90 -464.41 -2.27 -26.91 16 14 C 0.50 17.09 7.73 87.27 0.67 17.76 16 15 O -0.53 -19.11 12.96 -3.25 -0.04 -19.15 16 16 C 0.50 15.68 7.69 87.27 0.67 16.36 16 17 O -0.54 -18.88 15.68 -3.25 -0.05 -18.93 16 18 N -0.56 -14.07 3.01 -832.22 -2.50 -16.57 16 19 C 0.10 1.87 6.05 86.19 0.52 2.39 16 20 C -0.10 -1.42 6.09 29.60 0.18 -1.24 16 21 C -0.14 -1.96 5.91 -11.99 -0.07 -2.03 16 22 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 23 C -0.16 -2.11 9.77 30.57 0.30 -1.81 16 24 C -0.18 -3.18 6.34 -10.99 -0.07 -3.25 16 25 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 26 C 0.10 2.19 5.63 86.43 0.49 2.67 16 27 H 0.03 1.19 6.71 -2.39 -0.02 1.18 16 28 H 0.06 3.11 6.22 -2.39 -0.01 3.09 16 29 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 3.17 6.12 -2.39 -0.01 3.15 16 32 H 0.03 1.15 6.86 -2.39 -0.02 1.14 16 33 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.41 14.78 5.65 -92.72 -0.52 14.25 16 37 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.09 1.96 6.72 -2.39 -0.02 1.94 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.10 1.23 8.12 -2.38 -0.02 1.21 16 43 H 0.13 3.59 4.34 -62.27 -0.27 3.32 16 44 H 0.07 1.58 8.12 -2.39 -0.02 1.56 16 Total: -1.00 -57.66 342.68 2.44 -55.22 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.22 Total: 26.23 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 4.86 Total: 4.14 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -4.57 Total: -91.66 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.09 Total: -38.08 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -57.66 2.44 -55.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330622202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.016 kcal (2) G-P(sol) polarization free energy of solvation -57.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds