Wall clock time and date at job start Tue Mar 31 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 113.28201 * 2 1 4 4 C 1.53499 * 114.21053 * 133.06397 * 2 1 3 5 5 N 1.47070 * 87.98601 * 139.65496 * 4 2 1 6 6 C 1.34771 * 136.05713 * 152.84060 * 5 4 2 7 7 O 1.21343 * 120.00151 * 0.02562 * 6 5 4 8 8 C 1.49452 * 119.99789 * 180.02562 * 6 5 4 9 9 O 1.21348 * 120.00367 * 353.71176 * 8 6 5 10 10 N 1.34782 * 119.99732 * 173.44301 * 8 6 5 11 11 C 1.46923 * 120.63205 * 352.63717 * 10 8 6 12 12 C 1.53624 * 108.54356 * 126.37348 * 11 10 8 13 13 C 1.53040 * 109.24416 * 54.85556 * 12 11 10 14 14 C 1.53045 * 109.53881 * 298.51591 * 13 12 11 15 15 H 1.08995 * 109.49733 * 301.41089 * 14 13 12 16 16 C 1.50694 * 109.49705 * 181.31373 * 14 13 12 17 17 H 1.07998 * 120.00247 * 0.15679 * 16 14 13 18 18 C 1.37884 * 119.99799 * 180.15993 * 16 14 13 19 19 N 1.31513 * 119.99858 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99965 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47070 * 59.99623 * 20 18 16 22 22 H 1.48490 * 109.47175 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46747 * 299.99984 * 20 18 16 24 24 C 1.46930 * 120.62921 * 172.92194 * 10 8 6 25 25 C 1.47070 * 87.88181 * 333.10648 * 5 4 2 26 26 H 1.08999 * 109.47110 * 286.92881 * 1 2 3 27 27 H 1.08996 * 109.47834 * 46.93338 * 1 2 3 28 28 H 1.09003 * 109.47049 * 166.93612 * 1 2 3 29 29 H 1.08996 * 109.47174 * 193.06885 * 3 2 1 30 30 H 1.08996 * 109.46660 * 313.07202 * 3 2 1 31 31 H 1.09003 * 109.46526 * 73.06649 * 3 2 1 32 32 H 1.09002 * 113.46119 * 24.87898 * 4 2 1 33 33 H 1.08995 * 113.46909 * 254.43703 * 4 2 1 34 34 H 1.09000 * 109.58991 * 246.20444 * 11 10 8 35 35 H 1.09003 * 109.58333 * 6.63133 * 11 10 8 36 36 H 1.09003 * 109.63057 * 294.87016 * 12 11 10 37 37 H 1.08994 * 109.45942 * 174.74285 * 12 11 10 38 38 H 1.08996 * 109.46342 * 178.49210 * 13 12 11 39 39 H 1.09002 * 109.45881 * 58.53116 * 13 12 11 40 40 H 0.97006 * 119.99520 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.58688 * 353.37301 * 24 10 8 42 42 H 1.09004 * 109.58487 * 113.64681 * 24 10 8 43 43 H 1.09006 * 113.46824 * 141.68226 * 25 5 4 44 44 H 1.09001 * 113.46564 * 272.10901 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1347 1.4055 0.0000 4 6 2.1594 -0.9559 1.0228 5 7 3.1599 -1.3052 0.0030 6 6 4.4335 -1.7461 0.0040 7 8 5.0069 -1.9420 1.0553 8 6 5.1395 -1.9937 -1.2897 9 8 4.5336 -1.9083 -2.3377 10 7 6.4505 -2.3064 -1.2928 11 6 7.2363 -2.2510 -0.0526 12 6 7.9336 -3.6055 0.1449 13 6 8.7536 -3.9376 -1.1039 14 6 7.8223 -4.0474 -2.3134 15 1 7.0758 -4.8199 -2.1289 16 6 8.6264 -4.4061 -3.5364 17 1 9.6946 -4.5448 -3.4588 18 6 7.9983 -4.5572 -4.7545 19 7 6.6976 -4.3878 -4.8491 20 14 8.9950 -5.0026 -6.2704 21 1 9.6726 -6.3058 -6.0520 22 1 8.0913 -5.1057 -7.4442 23 1 10.0132 -3.9508 -6.5198 24 6 7.1225 -2.7033 -2.5377 25 6 2.1612 -0.9553 -1.0183 26 1 -0.3633 0.2992 0.9831 27 1 -0.3634 0.7017 -0.7507 28 1 -0.3633 -1.0011 -0.2323 29 1 3.1978 1.3436 -0.2324 30 1 1.6336 2.0165 -0.7507 31 1 2.0033 1.8575 0.9832 32 1 1.5100 -1.7875 1.2965 33 1 2.5821 -0.4475 1.8893 34 1 7.9827 -1.4603 -0.1280 35 1 6.5746 -2.0526 0.7906 36 1 7.1860 -4.3822 0.3063 37 1 8.5943 -3.5511 1.0100 38 1 9.2713 -4.8854 -0.9570 39 1 9.4845 -3.1481 -1.2790 40 1 6.2557 -4.4945 -5.7061 41 1 6.3857 -2.8034 -3.3347 42 1 7.8579 -1.9474 -2.8130 43 1 2.5854 -0.4464 -1.8839 44 1 1.5124 -1.7867 -1.2938 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333388681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:28 Heat of formation + Delta-G solvation = -20.711624 kcal Electronic energy + Delta-G solvation = -24746.634225 eV Core-core repulsion = 21279.842752 eV Total energy + Delta-G solvation = -3466.791474 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.99973 -39.52123 -37.68899 -36.72865 -33.34175 -32.58493 -31.68168 -29.70766 -27.84158 -27.60624 -26.24123 -25.34872 -24.84577 -22.13370 -21.71445 -19.70028 -18.81856 -18.46465 -17.01077 -16.69820 -16.12932 -16.03774 -15.47137 -14.78343 -14.67628 -14.53756 -14.08764 -13.78997 -13.60887 -13.48421 -13.14090 -12.75704 -12.58841 -12.53181 -12.26243 -12.07600 -11.94609 -11.78227 -11.61747 -11.41108 -11.15368 -10.95979 -10.69968 -10.48679 -10.44066 -10.24673 -10.00052 -9.84055 -9.18994 -9.10276 -8.87716 -8.48140 -8.37586 -7.79569 -6.01479 -4.09741 1.83745 2.48012 3.31753 3.37196 3.38993 3.68008 3.74846 3.95202 4.41673 4.54852 4.61204 4.69887 4.89532 5.23208 5.29034 5.31960 5.35615 5.45568 5.52268 5.64237 5.68417 5.69351 5.70819 5.74363 5.80746 5.88833 5.96889 6.10787 6.23480 6.40134 6.48475 6.62951 6.73455 6.89547 7.01089 7.10181 7.19573 7.54347 7.61238 7.82586 7.94387 7.97427 8.19727 8.36770 8.62532 8.94181 9.55693 11.04135 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021969 B = 0.004120 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.240708 B = 6794.651355 C = 7739.783403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.109 4.109 3 C -0.125 4.125 4 C 0.111 3.889 5 N -0.620 5.620 6 C 0.538 3.462 7 O -0.517 6.517 8 C 0.499 3.501 9 O -0.521 6.521 10 N -0.569 5.569 11 C 0.051 3.949 12 C -0.127 4.127 13 C -0.113 4.113 14 C 0.041 3.959 15 H 0.029 0.971 16 C -0.520 4.520 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.883 5.883 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.110 3.890 25 C 0.116 3.884 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.142 0.858 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.123 0.877 42 H 0.047 0.953 43 H 0.091 0.909 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.026 9.790 11.215 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.110 4.110 3 C -0.182 4.182 4 C -0.011 4.011 5 N -0.355 5.355 6 C 0.325 3.675 7 O -0.395 6.395 8 C 0.280 3.720 9 O -0.397 6.397 10 N -0.301 5.301 11 C -0.071 4.071 12 C -0.165 4.165 13 C -0.151 4.151 14 C 0.022 3.978 15 H 0.047 0.953 16 C -0.558 4.558 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.521 5.521 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.010 4.010 25 C -0.007 4.007 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.926 9.630 11.047 18.280 hybrid contribution 0.693 -0.460 -0.899 1.225 sum -10.233 9.170 10.148 17.081 Atomic orbital electron populations 1.21633 0.92376 1.02568 1.02402 1.22259 0.96101 0.95438 0.97165 1.21516 1.01042 0.93459 1.02157 1.23212 0.87763 0.96759 0.93381 1.49306 1.09912 1.63975 1.12325 1.20431 0.80458 0.76139 0.90470 1.90306 1.63094 1.51814 1.34298 1.19654 0.83574 0.80508 0.88225 1.90731 1.65770 1.50918 1.32330 1.48439 1.07035 1.62490 1.12128 1.23145 0.97113 0.97575 0.89275 1.21928 0.99153 0.96940 0.98511 1.21666 0.98275 1.00095 0.95036 1.18965 0.93888 0.92594 0.92361 0.95310 1.21067 0.94157 1.47986 0.92617 0.92285 1.25061 0.94922 0.94954 0.99092 1.69869 1.08111 1.48646 1.25474 0.86620 0.79901 0.79021 0.82254 1.20254 1.21239 1.20208 1.22472 0.97554 0.96876 0.84069 1.23208 0.87552 0.96568 0.93388 0.91920 0.91746 0.91938 0.92175 0.91721 0.91996 0.89396 0.90158 0.92692 0.84166 0.92365 0.92314 0.93084 0.93242 0.92590 0.85953 0.93431 0.89061 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 9.30 37.15 0.35 -0.47 16 2 C -0.11 -0.94 1.53 -154.13 -0.24 -1.18 16 3 C -0.12 -1.05 9.22 37.16 0.34 -0.71 16 4 C 0.11 1.14 7.79 -8.51 -0.07 1.07 16 5 N -0.62 -8.99 3.50 -185.85 -0.65 -9.64 16 6 C 0.54 9.78 8.03 -11.59 -0.09 9.68 16 7 O -0.52 -9.73 13.88 5.50 0.08 -9.65 16 8 C 0.50 10.65 7.74 -11.58 -0.09 10.56 16 9 O -0.52 -12.20 14.76 5.50 0.08 -12.12 16 10 N -0.57 -12.41 2.97 -173.01 -0.51 -12.92 16 11 C 0.05 0.95 6.29 -3.49 -0.02 0.93 16 12 C -0.13 -2.36 6.10 -26.39 -0.16 -2.52 16 13 C -0.11 -2.40 5.10 -26.69 -0.14 -2.53 16 14 C 0.04 1.05 2.25 -91.65 -0.21 0.84 16 15 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 16 C -0.52 -14.28 8.56 -34.44 -0.29 -14.57 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.88 -25.72 11.39 55.43 0.63 -25.09 16 20 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.11 2.74 5.38 -3.71 -0.02 2.72 16 25 C 0.12 1.39 6.66 -8.65 -0.06 1.33 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 28 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 29 H 0.06 0.64 7.93 -51.93 -0.41 0.22 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.14 2.60 3.79 -56.70 -0.22 2.39 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.12 3.47 5.17 -51.93 -0.27 3.20 16 42 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.23 7.50 -51.93 -0.39 0.84 16 44 H 0.09 0.99 7.94 -51.93 -0.41 0.58 16 LS Contribution 348.65 15.07 5.25 5.25 Total: -1.00 -31.45 348.65 -8.07 -39.52 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.14 Total: 1.57 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.79 Total: 6.78 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.53 Total: -47.65 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.16 Total: -21.77 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.45 -8.07 -39.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333388681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.806 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds