Wall clock time and date at job start Tue Mar 31 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 113.28201 * 2 1 4 4 C 1.53499 * 114.21053 * 133.06397 * 2 1 3 5 5 N 1.47070 * 87.98601 * 139.65496 * 4 2 1 6 6 C 1.34771 * 136.05713 * 152.84060 * 5 4 2 7 7 O 1.21343 * 120.00151 * 0.02562 * 6 5 4 8 8 C 1.49452 * 119.99789 * 180.02562 * 6 5 4 9 9 O 1.21348 * 120.00367 * 353.71176 * 8 6 5 10 10 N 1.34782 * 119.99732 * 173.44301 * 8 6 5 11 11 C 1.46923 * 120.63205 * 352.63717 * 10 8 6 12 12 C 1.53624 * 108.54356 * 126.37348 * 11 10 8 13 13 C 1.53040 * 109.24416 * 54.85556 * 12 11 10 14 14 C 1.53045 * 109.53881 * 298.51591 * 13 12 11 15 15 H 1.08995 * 109.49733 * 301.41089 * 14 13 12 16 16 C 1.50694 * 109.49705 * 181.31373 * 14 13 12 17 17 H 1.07998 * 120.00247 * 0.15679 * 16 14 13 18 18 C 1.37884 * 119.99799 * 180.15993 * 16 14 13 19 19 N 1.31513 * 119.99858 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99965 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47070 * 59.99623 * 20 18 16 22 22 H 1.48490 * 109.47175 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46747 * 299.99984 * 20 18 16 24 24 C 1.46930 * 120.62921 * 172.92194 * 10 8 6 25 25 C 1.47070 * 87.88181 * 333.10648 * 5 4 2 26 26 H 1.08999 * 109.47110 * 286.92881 * 1 2 3 27 27 H 1.08996 * 109.47834 * 46.93338 * 1 2 3 28 28 H 1.09003 * 109.47049 * 166.93612 * 1 2 3 29 29 H 1.08996 * 109.47174 * 193.06885 * 3 2 1 30 30 H 1.08996 * 109.46660 * 313.07202 * 3 2 1 31 31 H 1.09003 * 109.46526 * 73.06649 * 3 2 1 32 32 H 1.09002 * 113.46119 * 24.87898 * 4 2 1 33 33 H 1.08995 * 113.46909 * 254.43703 * 4 2 1 34 34 H 1.09000 * 109.58991 * 246.20444 * 11 10 8 35 35 H 1.09003 * 109.58333 * 6.63133 * 11 10 8 36 36 H 1.09003 * 109.63057 * 294.87016 * 12 11 10 37 37 H 1.08994 * 109.45942 * 174.74285 * 12 11 10 38 38 H 1.08996 * 109.46342 * 178.49210 * 13 12 11 39 39 H 1.09002 * 109.45881 * 58.53116 * 13 12 11 40 40 H 0.97006 * 119.99520 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.58688 * 353.37301 * 24 10 8 42 42 H 1.09004 * 109.58487 * 113.64681 * 24 10 8 43 43 H 1.09006 * 113.46824 * 141.68226 * 25 5 4 44 44 H 1.09001 * 113.46564 * 272.10901 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1347 1.4055 0.0000 4 6 2.1594 -0.9559 1.0228 5 7 3.1599 -1.3052 0.0030 6 6 4.4335 -1.7461 0.0040 7 8 5.0069 -1.9420 1.0553 8 6 5.1395 -1.9937 -1.2897 9 8 4.5336 -1.9083 -2.3377 10 7 6.4505 -2.3064 -1.2928 11 6 7.2363 -2.2510 -0.0526 12 6 7.9336 -3.6055 0.1449 13 6 8.7536 -3.9376 -1.1039 14 6 7.8223 -4.0474 -2.3134 15 1 7.0758 -4.8199 -2.1289 16 6 8.6264 -4.4061 -3.5364 17 1 9.6946 -4.5448 -3.4588 18 6 7.9983 -4.5572 -4.7545 19 7 6.6976 -4.3878 -4.8491 20 14 8.9950 -5.0026 -6.2704 21 1 9.6726 -6.3058 -6.0520 22 1 8.0913 -5.1057 -7.4442 23 1 10.0132 -3.9508 -6.5198 24 6 7.1225 -2.7033 -2.5377 25 6 2.1612 -0.9553 -1.0183 26 1 -0.3633 0.2992 0.9831 27 1 -0.3634 0.7017 -0.7507 28 1 -0.3633 -1.0011 -0.2323 29 1 3.1978 1.3436 -0.2324 30 1 1.6336 2.0165 -0.7507 31 1 2.0033 1.8575 0.9832 32 1 1.5100 -1.7875 1.2965 33 1 2.5821 -0.4475 1.8893 34 1 7.9827 -1.4603 -0.1280 35 1 6.5746 -2.0526 0.7906 36 1 7.1860 -4.3822 0.3063 37 1 8.5943 -3.5511 1.0100 38 1 9.2713 -4.8854 -0.9570 39 1 9.4845 -3.1481 -1.2790 40 1 6.2557 -4.4945 -5.7061 41 1 6.3857 -2.8034 -3.3347 42 1 7.8579 -1.9474 -2.8130 43 1 2.5854 -0.4464 -1.8839 44 1 1.5124 -1.7867 -1.2938 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333388681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:28 Heat of formation + Delta-G solvation = -40.641607 kcal Electronic energy + Delta-G solvation = -24747.498454 eV Core-core repulsion = 21279.842752 eV Total energy + Delta-G solvation = -3467.655702 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.23585 -40.90409 -39.14789 -38.48644 -35.28496 -33.69027 -33.35715 -31.58935 -28.94181 -28.28332 -27.34557 -27.09403 -26.50816 -23.77283 -23.39487 -21.23761 -20.20535 -19.55284 -18.70607 -18.17013 -17.89729 -17.34582 -16.97444 -16.53119 -16.09894 -15.76875 -15.47310 -15.10064 -14.92063 -14.82607 -14.48409 -14.47004 -14.23105 -13.83361 -13.51724 -13.19360 -13.08653 -12.99276 -12.86640 -12.70819 -12.53463 -12.32305 -12.24474 -12.17782 -12.00275 -11.75107 -11.62946 -11.24149 -11.13725 -11.00399 -10.56955 -10.13651 -9.86670 -9.57339 -8.14168 -6.31276 0.31365 1.15608 1.41029 1.42988 1.51001 2.11062 2.33019 2.41827 3.02426 3.14247 3.21121 3.76047 3.90816 4.11376 4.14716 4.22238 4.26559 4.36352 4.49734 4.53421 4.55982 4.68906 4.72812 4.77501 4.82974 4.85678 4.95391 5.02087 5.03216 5.08254 5.12708 5.18105 5.20359 5.28347 5.31813 5.44306 5.48945 5.54005 5.80470 5.90633 6.21298 6.29081 6.38921 6.62178 6.80186 6.96972 7.38790 8.89956 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021969 B = 0.004120 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.240708 B = 6794.651355 C = 7739.783403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 C -0.126 4.126 4 C 0.109 3.891 5 N -0.621 5.621 6 C 0.539 3.461 7 O -0.528 6.528 8 C 0.488 3.512 9 O -0.553 6.553 10 N -0.577 5.577 11 C 0.050 3.950 12 C -0.120 4.120 13 C -0.106 4.106 14 C 0.040 3.960 15 H -0.013 1.013 16 C -0.538 4.538 17 H 0.064 0.936 18 C 0.011 3.989 19 N -0.916 5.916 20 Si 0.962 3.038 21 H -0.269 1.269 22 H -0.286 1.286 23 H -0.267 1.267 24 C 0.124 3.876 25 C 0.102 3.898 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.044 0.956 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.262 0.738 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.525 10.698 12.886 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 C -0.183 4.183 4 C -0.011 4.011 5 N -0.354 5.354 6 C 0.324 3.676 7 O -0.408 6.408 8 C 0.271 3.729 9 O -0.432 6.432 10 N -0.308 5.308 11 C -0.070 4.070 12 C -0.158 4.158 13 C -0.144 4.144 14 C 0.021 3.979 15 H 0.005 0.995 16 C -0.576 4.576 17 H 0.082 0.918 18 C -0.188 4.188 19 N -0.555 5.555 20 Si 0.786 3.214 21 H -0.194 1.194 22 H -0.212 1.212 23 H -0.192 1.192 24 C 0.002 3.998 25 C -0.020 4.020 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.168 0.832 36 H 0.063 0.937 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.451 10.557 12.755 20.131 hybrid contribution 0.754 -0.711 -1.425 1.762 sum -10.697 9.847 11.329 18.432 Atomic orbital electron populations 1.21636 0.89631 1.03297 1.03880 1.22194 0.97848 0.94453 0.94091 1.21555 0.99376 0.93656 1.03692 1.23599 0.86481 0.97908 0.93150 1.49494 1.09231 1.61541 1.15158 1.19597 0.81914 0.77418 0.88629 1.90266 1.63816 1.53137 1.33611 1.20392 0.83439 0.79567 0.89530 1.90697 1.66429 1.52127 1.33981 1.48480 1.07759 1.62486 1.12116 1.23372 0.97410 0.98253 0.88002 1.21892 0.99053 0.96254 0.98567 1.21560 0.97774 1.00734 0.94313 1.18899 0.93631 0.91436 0.93982 0.99471 1.21465 0.94589 1.47921 0.93647 0.91799 1.25909 0.95825 0.94795 1.02287 1.70055 1.09864 1.49645 1.25935 0.85556 0.78429 0.79119 0.78254 1.19370 1.21204 1.19171 1.21945 0.96417 0.96633 0.84794 1.23517 0.87185 0.97926 0.93359 0.89974 0.90927 0.91456 0.94917 0.90479 0.90061 0.87180 0.89255 0.91008 0.83226 0.93709 0.88299 0.92657 0.92323 0.92908 0.89803 0.93840 0.91263 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.30 71.98 0.67 -0.46 16 2 C -0.09 -1.29 1.53 -51.94 -0.08 -1.37 16 3 C -0.13 -1.88 9.22 71.98 0.66 -1.22 16 4 C 0.11 1.97 7.79 83.18 0.65 2.62 16 5 N -0.62 -17.69 3.50 -860.26 -3.01 -20.71 16 6 C 0.54 19.74 8.03 87.27 0.70 20.44 16 7 O -0.53 -19.54 13.88 -3.23 -0.04 -19.58 16 8 C 0.49 21.67 7.74 87.27 0.68 22.34 16 9 O -0.55 -27.49 14.76 -3.24 -0.05 -27.54 16 10 N -0.58 -25.93 2.97 -819.63 -2.43 -28.37 16 11 C 0.05 1.84 6.29 86.51 0.54 2.38 16 12 C -0.12 -4.30 6.10 30.82 0.19 -4.11 16 13 C -0.11 -4.46 5.10 30.62 0.16 -4.30 16 14 C 0.04 2.09 2.25 -11.46 -0.03 2.07 16 15 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 16 C -0.54 -30.19 8.56 25.60 0.22 -29.97 16 17 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 18 C 0.01 0.64 5.30 84.66 0.45 1.09 16 19 N -0.92 -55.64 11.39 21.45 0.24 -55.39 16 20 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 C 0.12 6.44 5.38 86.36 0.46 6.91 16 25 C 0.10 2.42 6.66 83.09 0.55 2.97 16 26 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.58 8.13 -2.39 -0.02 0.56 16 28 H 0.07 0.58 7.90 -2.39 -0.02 0.56 16 29 H 0.03 0.67 7.93 -2.39 -0.02 0.65 16 30 H 0.08 0.97 8.13 -2.39 -0.02 0.95 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 1.58 8.10 -2.39 -0.02 1.56 16 33 H 0.09 1.51 8.12 -2.39 -0.02 1.49 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.15 5.39 3.79 -77.97 -0.30 5.10 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 41 H 0.08 5.06 5.17 -2.39 -0.01 5.05 16 42 H 0.04 2.24 8.14 -2.38 -0.02 2.22 16 43 H 0.07 1.95 7.50 -2.38 -0.02 1.94 16 44 H 0.10 2.15 7.94 -2.39 -0.02 2.13 16 Total: -1.00 -71.73 348.65 3.25 -68.48 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.69 Total: 17.34 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 5.83 Total: 19.38 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -5.20 Total: -104.46 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -0.09 Total: -47.12 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.73 3.25 -68.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333388681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.842 kcal (2) G-P(sol) polarization free energy of solvation -71.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds