Wall clock time and date at job start Tue Mar 31 2020 06:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.47008 * 2 1 4 4 N 1.33693 * 126.27151 * 90.02425 * 3 2 1 5 5 C 1.30620 * 108.99638 * 179.97438 * 4 3 2 6 6 O 1.33668 * 109.15424 * 0.02562 * 5 4 3 7 7 C 1.35346 * 107.68158 * 359.75032 * 6 5 4 8 8 C 1.46723 * 126.64496 * 180.26894 * 7 6 5 9 9 O 1.21678 * 120.00266 * 173.96808 * 8 7 6 10 10 N 1.34776 * 119.99598 * 353.96375 * 8 7 6 11 11 C 1.46498 * 120.00404 * 4.33383 * 10 8 7 12 12 C 1.50700 * 109.47187 * 83.65208 * 11 10 8 13 13 H 1.08002 * 119.99632 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00241 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99967 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00163 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47587 * 89.99415 * 16 14 12 18 18 H 1.48501 * 109.46828 * 209.99521 * 16 14 12 19 19 H 1.48497 * 109.47031 * 329.99318 * 16 14 12 20 20 C 1.46505 * 120.00007 * 184.33682 * 10 8 7 21 21 C 1.52994 * 109.47173 * 89.99661 * 20 10 8 22 22 C 1.53008 * 109.47068 * 180.02562 * 21 20 10 23 23 C 1.53001 * 109.47126 * 65.00142 * 22 21 20 24 24 C 1.53001 * 109.47199 * 184.99966 * 22 21 20 25 25 H 1.08998 * 109.47308 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47497 * 299.99799 * 1 2 3 27 27 H 1.08999 * 109.47334 * 59.99652 * 1 2 3 28 28 H 1.09002 * 109.47497 * 240.00201 * 2 1 3 29 29 H 1.08999 * 109.47334 * 120.00348 * 2 1 3 30 30 H 1.07997 * 125.42260 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.47528 * 203.65007 * 11 10 8 32 32 H 1.08998 * 109.47199 * 323.65207 * 11 10 8 33 33 H 0.97000 * 120.00596 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.47154 * 210.00045 * 20 10 8 35 35 H 1.09001 * 109.46811 * 329.99865 * 20 10 8 36 36 H 1.08998 * 109.47394 * 300.00237 * 21 20 10 37 37 H 1.09001 * 109.47086 * 60.00372 * 21 20 10 38 38 H 1.09004 * 109.46797 * 305.00466 * 22 21 20 39 39 H 1.08999 * 109.46884 * 300.00507 * 23 22 21 40 40 H 1.09004 * 109.47164 * 59.99925 * 23 22 21 41 41 H 1.08994 * 109.47288 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.46756 * 60.00031 * 24 22 21 43 43 H 1.08998 * 109.47018 * 179.97438 * 24 22 21 44 44 H 1.08998 * 109.47227 * 300.00519 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2963 2.1664 1.0779 5 6 2.7124 3.3422 0.6900 6 8 2.7263 3.3838 -0.6460 7 6 2.3057 2.1798 -1.0991 8 6 2.1682 1.7713 -2.5016 9 8 1.8828 0.6204 -2.7749 10 7 2.3579 2.6708 -3.4872 11 6 2.7939 4.0314 -3.1632 12 6 4.2929 4.0555 -3.0101 13 1 4.8637 3.1479 -3.1406 14 6 4.9356 5.2358 -2.7024 15 7 4.2406 6.3407 -2.5430 16 14 6.7938 5.2658 -2.5133 17 1 7.4206 5.5562 -3.8278 18 1 7.1752 6.3199 -1.5393 19 1 7.2627 3.9451 -2.0223 20 6 2.1282 2.2880 -4.8825 21 6 0.6712 2.5691 -5.2551 22 6 0.4310 2.1687 -6.7123 23 6 0.6019 0.6554 -6.8602 24 6 -0.9890 2.5640 -7.1224 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.9995 4.1519 1.3445 31 1 2.4998 4.7079 -3.9656 32 1 2.3283 4.3497 -2.2306 33 1 4.6927 7.1713 -2.3269 34 1 2.7870 2.8656 -5.5309 35 1 2.3364 1.2253 -5.0067 36 1 0.0123 1.9915 -4.6067 37 1 0.4629 3.6317 -5.1310 38 1 1.1499 2.6798 -7.3527 39 1 1.6135 0.3738 -6.5679 40 1 -0.1169 0.1443 -6.2197 41 1 0.4305 0.3701 -7.8980 42 1 -1.1107 3.6421 -7.0170 43 1 -1.1598 2.2792 -8.1606 44 1 -1.7078 2.0529 -6.4820 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338836618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:45 Heat of formation + Delta-G solvation = -34.919044 kcal Electronic energy + Delta-G solvation = -24895.026039 eV Core-core repulsion = 21427.618486 eV Total energy + Delta-G solvation = -3467.407553 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.81175 -39.09052 -36.66181 -35.46645 -34.45472 -32.63678 -32.45855 -29.91820 -28.63097 -27.06546 -26.98446 -24.50834 -23.25254 -23.20343 -22.26140 -20.56353 -19.81471 -19.04635 -17.02068 -16.43284 -16.23808 -15.85454 -15.60868 -15.02537 -14.55808 -14.43153 -14.32520 -13.74689 -13.57055 -13.31073 -13.19789 -12.88755 -12.42155 -12.33663 -12.30139 -12.11405 -11.76631 -11.49525 -11.19380 -11.07924 -11.04295 -10.84882 -10.78312 -10.73977 -10.55476 -10.52496 -10.31563 -10.20447 -10.05148 -9.77902 -9.38221 -8.56904 -8.42982 -7.78746 -6.19208 -4.24940 1.48398 2.95120 3.17543 3.20507 3.27650 3.32184 3.73771 3.88377 4.32499 4.50147 4.99284 5.07573 5.08942 5.13889 5.15207 5.23338 5.51930 5.63294 5.66566 5.69009 5.75227 5.77889 5.84477 5.93211 5.96152 6.04900 6.09540 6.15343 6.20314 6.23684 6.27842 6.34360 6.45599 6.46277 6.56687 6.61758 6.68553 6.73849 7.25726 7.43190 7.73983 8.03113 8.03332 8.19808 8.69382 8.83875 9.41079 10.88067 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009572 B = 0.007225 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.478060 B = 3874.290425 C = 6123.792841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 C 0.051 3.949 4 N -0.504 5.504 5 C 0.178 3.822 6 O -0.135 6.135 7 C -0.082 4.082 8 C 0.602 3.398 9 O -0.548 6.548 10 N -0.583 5.583 11 C 0.232 3.768 12 C -0.529 4.529 13 H 0.057 0.943 14 C 0.069 3.931 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.118 3.882 21 C -0.128 4.128 22 C -0.094 4.094 23 C -0.148 4.148 24 C -0.145 4.145 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.244 0.756 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.264 0.736 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 -6.406 -1.565 9.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 C -0.074 4.074 4 N -0.233 5.233 5 C -0.047 4.047 6 O -0.017 6.017 7 C -0.139 4.139 8 C 0.389 3.611 9 O -0.430 6.430 10 N -0.311 5.311 11 C 0.113 3.887 12 C -0.568 4.568 13 H 0.076 0.924 14 C -0.134 4.134 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.005 4.005 21 C -0.167 4.167 22 C -0.113 4.113 23 C -0.205 4.205 24 C -0.202 4.202 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.260 0.740 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.537 -6.846 -1.111 10.242 hybrid contribution 1.366 0.813 -0.335 1.625 sum -6.171 -6.033 -1.446 8.750 Atomic orbital electron populations 1.21618 0.94573 1.01514 1.01770 1.20034 0.96034 0.88493 1.03831 1.21852 1.00688 0.98039 0.86810 1.70241 1.18008 1.03436 1.31658 1.28187 0.97926 0.97187 0.81399 1.85140 1.62090 1.32200 1.22257 1.22937 1.09393 0.85377 0.96188 1.16462 0.77739 0.84881 0.81992 1.90727 1.51958 1.18068 1.82285 1.48205 1.63124 1.14477 1.05334 1.19698 0.95481 0.75937 0.97594 1.21374 0.91518 0.95127 1.48766 0.92437 1.24847 0.98358 0.95302 0.94877 1.69918 1.35632 0.99512 1.47787 0.86581 0.85414 0.77888 0.78129 1.20494 1.20987 1.19899 1.21462 0.95582 1.01435 0.81974 1.22011 0.97400 1.01690 0.95594 1.21049 0.97267 0.96469 0.96479 1.21881 1.02281 0.95464 1.00851 1.21821 0.96502 1.01228 1.00670 0.92282 0.92988 0.92605 0.88352 0.90815 0.73973 0.94271 0.93148 0.92614 0.90274 0.90312 0.91905 0.91715 0.91123 0.92220 0.92718 0.93243 0.92763 0.93005 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 37.15 0.37 -1.57 16 2 C -0.05 -0.74 6.00 -27.89 -0.17 -0.91 16 3 C 0.05 0.97 6.41 -82.46 -0.53 0.44 16 4 N -0.50 -9.27 11.26 -10.88 -0.12 -9.39 16 5 C 0.18 3.12 13.21 52.25 0.69 3.81 16 6 O -0.13 -2.86 6.87 4.41 0.03 -2.83 16 7 C -0.08 -1.73 6.78 -36.84 -0.25 -1.98 16 8 C 0.60 12.90 7.58 -12.83 -0.10 12.80 16 9 O -0.55 -11.73 14.32 5.21 0.07 -11.66 16 10 N -0.58 -12.30 2.47 -176.59 -0.44 -12.74 16 11 C 0.23 5.52 4.76 -5.19 -0.02 5.49 16 12 C -0.53 -13.77 8.53 -34.44 -0.29 -14.06 16 13 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -24.04 13.29 55.43 0.74 -23.31 16 16 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.12 2.10 5.17 -4.04 -0.02 2.08 16 21 C -0.13 -1.95 5.01 -26.73 -0.13 -2.09 16 22 C -0.09 -1.16 2.92 -90.61 -0.26 -1.43 16 23 C -0.15 -1.75 8.95 37.16 0.33 -1.41 16 24 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.10 1.68 6.35 -51.93 -0.33 1.35 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.24 3.08 8.06 -52.49 -0.42 2.66 16 31 H 0.04 0.97 8.02 -51.93 -0.42 0.55 16 32 H 0.05 1.27 5.36 -51.93 -0.28 0.99 16 33 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 34 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 35 H 0.08 1.39 5.79 -51.93 -0.30 1.09 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.75 6.56 -51.93 -0.34 0.40 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -29.15 360.97 -6.57 -35.72 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.13 Total: 1.58 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.15 Total: 1.64 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.18 Total: -45.44 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.10 Total: -14.49 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.15 -6.57 -35.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338836618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.804 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds