Wall clock time and date at job start Tue Mar 31 2020 06:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.47008 * 2 1 4 4 N 1.33693 * 126.27151 * 90.02425 * 3 2 1 5 5 C 1.30620 * 108.99638 * 179.97438 * 4 3 2 6 6 O 1.33668 * 109.15424 * 0.02562 * 5 4 3 7 7 C 1.35346 * 107.68158 * 359.75032 * 6 5 4 8 8 C 1.46723 * 126.64496 * 180.26894 * 7 6 5 9 9 O 1.21678 * 120.00266 * 173.96808 * 8 7 6 10 10 N 1.34776 * 119.99598 * 353.96375 * 8 7 6 11 11 C 1.46498 * 120.00404 * 4.33383 * 10 8 7 12 12 C 1.50700 * 109.47187 * 83.65208 * 11 10 8 13 13 H 1.08002 * 119.99632 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00241 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99967 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00163 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47587 * 89.99415 * 16 14 12 18 18 H 1.48501 * 109.46828 * 209.99521 * 16 14 12 19 19 H 1.48497 * 109.47031 * 329.99318 * 16 14 12 20 20 C 1.46505 * 120.00007 * 184.33682 * 10 8 7 21 21 C 1.52994 * 109.47173 * 89.99661 * 20 10 8 22 22 C 1.53008 * 109.47068 * 180.02562 * 21 20 10 23 23 C 1.53001 * 109.47126 * 65.00142 * 22 21 20 24 24 C 1.53001 * 109.47199 * 184.99966 * 22 21 20 25 25 H 1.08998 * 109.47308 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47497 * 299.99799 * 1 2 3 27 27 H 1.08999 * 109.47334 * 59.99652 * 1 2 3 28 28 H 1.09002 * 109.47497 * 240.00201 * 2 1 3 29 29 H 1.08999 * 109.47334 * 120.00348 * 2 1 3 30 30 H 1.07997 * 125.42260 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.47528 * 203.65007 * 11 10 8 32 32 H 1.08998 * 109.47199 * 323.65207 * 11 10 8 33 33 H 0.97000 * 120.00596 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.47154 * 210.00045 * 20 10 8 35 35 H 1.09001 * 109.46811 * 329.99865 * 20 10 8 36 36 H 1.08998 * 109.47394 * 300.00237 * 21 20 10 37 37 H 1.09001 * 109.47086 * 60.00372 * 21 20 10 38 38 H 1.09004 * 109.46797 * 305.00466 * 22 21 20 39 39 H 1.08999 * 109.46884 * 300.00507 * 23 22 21 40 40 H 1.09004 * 109.47164 * 59.99925 * 23 22 21 41 41 H 1.08994 * 109.47288 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.46756 * 60.00031 * 24 22 21 43 43 H 1.08998 * 109.47018 * 179.97438 * 24 22 21 44 44 H 1.08998 * 109.47227 * 300.00519 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2963 2.1664 1.0779 5 6 2.7124 3.3422 0.6900 6 8 2.7263 3.3838 -0.6460 7 6 2.3057 2.1798 -1.0991 8 6 2.1682 1.7713 -2.5016 9 8 1.8828 0.6204 -2.7749 10 7 2.3579 2.6708 -3.4872 11 6 2.7939 4.0314 -3.1632 12 6 4.2929 4.0555 -3.0101 13 1 4.8637 3.1479 -3.1406 14 6 4.9356 5.2358 -2.7024 15 7 4.2406 6.3407 -2.5430 16 14 6.7938 5.2658 -2.5133 17 1 7.4206 5.5562 -3.8278 18 1 7.1752 6.3199 -1.5393 19 1 7.2627 3.9451 -2.0223 20 6 2.1282 2.2880 -4.8825 21 6 0.6712 2.5691 -5.2551 22 6 0.4310 2.1687 -6.7123 23 6 0.6019 0.6554 -6.8602 24 6 -0.9890 2.5640 -7.1224 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.9995 4.1519 1.3445 31 1 2.4998 4.7079 -3.9656 32 1 2.3283 4.3497 -2.2306 33 1 4.6927 7.1713 -2.3269 34 1 2.7870 2.8656 -5.5309 35 1 2.3364 1.2253 -5.0067 36 1 0.0123 1.9915 -4.6067 37 1 0.4629 3.6317 -5.1310 38 1 1.1499 2.6798 -7.3527 39 1 1.6135 0.3738 -6.5679 40 1 -0.1169 0.1443 -6.2197 41 1 0.4305 0.3701 -7.8980 42 1 -1.1107 3.6421 -7.0170 43 1 -1.1598 2.2792 -8.1606 44 1 -1.7078 2.0529 -6.4820 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338836618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:45 Heat of formation + Delta-G solvation = -52.107909 kcal Electronic energy + Delta-G solvation = -24895.771405 eV Core-core repulsion = 21427.618486 eV Total energy + Delta-G solvation = -3468.152919 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.31401 -40.70713 -37.96897 -36.89998 -36.03345 -34.50996 -33.85329 -31.32948 -30.13478 -28.76849 -27.99020 -25.89542 -25.05389 -24.58180 -23.74742 -21.99101 -20.91990 -20.61716 -18.86212 -18.14461 -17.77989 -17.45651 -17.17055 -16.38589 -16.17854 -15.91909 -15.67107 -15.12665 -14.82002 -14.57769 -14.50697 -14.36039 -14.17943 -13.75714 -13.61773 -13.41454 -13.10567 -12.87229 -12.77716 -12.65018 -12.39197 -12.29340 -12.16717 -12.03351 -11.98466 -11.95969 -11.76178 -11.57212 -11.52148 -11.42815 -10.98301 -10.58165 -9.97417 -9.46322 -8.19758 -6.32356 -0.05043 1.37345 1.40157 1.48066 1.50400 1.70459 2.11639 2.28545 2.44291 3.10921 3.17346 3.64254 3.75442 3.94207 3.95128 4.07003 4.25890 4.36745 4.40478 4.47704 4.53898 4.65999 4.70682 4.73838 4.79292 4.84522 4.89036 4.94025 5.00444 5.03955 5.11888 5.13080 5.16124 5.23691 5.31016 5.32824 5.42686 5.47805 5.51105 5.64725 5.77444 6.04695 6.35329 6.62211 6.78183 7.09236 7.37161 8.86580 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009572 B = 0.007225 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.478060 B = 3874.290425 C = 6123.792841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.047 4.047 3 C 0.061 3.939 4 N -0.512 5.512 5 C 0.191 3.809 6 O -0.162 6.162 7 C -0.123 4.123 8 C 0.597 3.403 9 O -0.555 6.555 10 N -0.589 5.589 11 C 0.250 3.750 12 C -0.537 4.537 13 H 0.041 0.959 14 C 0.032 3.968 15 N -0.913 5.913 16 Si 0.948 3.052 17 H -0.274 1.274 18 H -0.275 1.275 19 H -0.280 1.280 20 C 0.116 3.884 21 C -0.117 4.117 22 C -0.091 4.091 23 C -0.145 4.145 24 C -0.142 4.142 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.286 0.714 31 H 0.024 0.976 32 H 0.039 0.961 33 H 0.268 0.732 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.448 -6.814 -1.298 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.085 4.085 3 C -0.064 4.064 4 N -0.242 5.242 5 C -0.033 4.033 6 O -0.046 6.046 7 C -0.178 4.178 8 C 0.385 3.615 9 O -0.438 6.438 10 N -0.317 5.317 11 C 0.130 3.870 12 C -0.576 4.576 13 H 0.059 0.941 14 C -0.169 4.169 15 N -0.552 5.552 16 Si 0.774 3.226 17 H -0.200 1.200 18 H -0.200 1.200 19 H -0.205 1.205 20 C -0.006 4.006 21 C -0.156 4.156 22 C -0.110 4.110 23 C -0.202 4.202 24 C -0.199 4.199 25 H 0.105 0.895 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.302 0.698 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.610 -7.272 -0.858 10.561 hybrid contribution 1.381 0.930 -0.342 1.700 sum -6.229 -6.342 -1.199 8.970 Atomic orbital electron populations 1.21568 0.92908 1.03140 1.01081 1.20159 0.97379 0.86831 1.04138 1.22350 0.98744 0.98898 0.86383 1.70307 1.18816 1.03834 1.31222 1.29258 0.95559 0.97882 0.80611 1.85091 1.62937 1.32635 1.23912 1.22962 1.12269 0.86148 0.96453 1.16611 0.77548 0.84842 0.82469 1.90700 1.52443 1.18051 1.82638 1.48213 1.63321 1.13562 1.06644 1.19289 0.94331 0.77013 0.96382 1.21448 0.92510 0.94627 1.48986 0.94073 1.25451 1.01963 0.94939 0.94502 1.69992 1.37079 0.99924 1.48186 0.85713 0.80948 0.77613 0.78314 1.19976 1.20005 1.20477 1.21631 0.97256 1.01301 0.80421 1.21907 0.95238 1.00893 0.97532 1.21050 0.98597 0.97034 0.94273 1.21853 1.01473 0.94788 1.02072 1.21792 0.95142 1.01187 1.01768 0.89536 0.92482 0.94395 0.89530 0.88885 0.69844 0.95749 0.94372 0.92288 0.90492 0.90245 0.92961 0.92624 0.90647 0.93297 0.93166 0.91138 0.92860 0.91128 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.89 71.98 0.71 -2.77 16 2 C -0.05 -1.48 6.00 29.85 0.18 -1.30 16 3 C 0.06 2.30 6.41 41.83 0.27 2.56 16 4 N -0.51 -18.22 11.26 -303.12 -3.41 -21.64 16 5 C 0.19 6.48 13.21 130.42 1.72 8.20 16 6 O -0.16 -6.93 6.87 -7.14 -0.05 -6.98 16 7 C -0.12 -5.23 6.78 24.05 0.16 -5.07 16 8 C 0.60 26.27 7.58 86.46 0.66 26.93 16 9 O -0.56 -24.25 14.32 -4.28 -0.06 -24.31 16 10 N -0.59 -25.66 2.47 -830.84 -2.06 -27.71 16 11 C 0.25 12.25 4.76 85.63 0.41 12.66 16 12 C -0.54 -28.42 8.53 25.60 0.22 -28.20 16 13 H 0.04 2.27 7.81 -2.91 -0.02 2.25 16 14 C 0.03 1.69 5.46 84.65 0.46 2.15 16 15 N -0.91 -49.30 13.29 21.44 0.28 -49.01 16 16 Si 0.95 41.93 29.54 68.60 2.03 43.96 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 C 0.12 4.22 5.17 86.38 0.45 4.66 16 21 C -0.12 -3.62 5.01 30.59 0.15 -3.47 16 22 C -0.09 -2.18 2.92 -10.79 -0.03 -2.21 16 23 C -0.14 -3.27 8.95 71.98 0.64 -2.63 16 24 C -0.14 -2.88 9.19 71.98 0.66 -2.22 16 25 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 2.93 6.35 -2.39 -0.02 2.92 16 29 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.29 6.52 8.06 -2.91 -0.02 6.49 16 31 H 0.02 1.25 8.02 -2.39 -0.02 1.23 16 32 H 0.04 1.99 5.36 -2.39 -0.01 1.98 16 33 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 34 H 0.08 2.79 8.07 -2.39 -0.02 2.77 16 35 H 0.08 2.87 5.79 -2.39 -0.01 2.85 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.05 1.20 6.56 -2.39 -0.02 1.18 16 40 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -62.28 360.97 4.37 -57.91 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.97 Total: 18.47 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 6.66 Total: 9.32 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -5.18 Total: -98.36 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.11 Total: -31.29 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -62.28 4.37 -57.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338836618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.799 kcal (2) G-P(sol) polarization free energy of solvation -62.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds