Wall clock time and date at job start Tue Mar 31 2020 07:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47582 * 2 1 4 4 H 1.09010 * 109.46884 * 305.74725 * 3 2 1 5 5 C 1.50704 * 109.47244 * 65.74378 * 3 2 1 6 6 O 1.21283 * 119.99678 * 24.50962 * 5 3 2 7 7 N 1.34770 * 119.99859 * 204.51355 * 5 3 2 8 8 C 1.46502 * 120.00538 * 354.99154 * 7 5 3 9 9 C 1.46509 * 119.99639 * 174.99791 * 7 5 3 10 10 H 1.08996 * 109.47298 * 359.97438 * 9 7 5 11 11 C 1.52999 * 109.46607 * 239.99544 * 9 7 5 12 12 C 1.50695 * 109.46988 * 119.99653 * 9 7 5 13 13 H 1.07999 * 120.00455 * 0.02562 * 12 9 7 14 14 C 1.37882 * 119.99821 * 179.97438 * 12 9 7 15 15 N 1.31513 * 119.99758 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99918 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46690 * 90.00717 * 16 14 12 18 18 H 1.48499 * 109.46893 * 210.00379 * 16 14 12 19 19 H 1.48493 * 109.47209 * 330.00635 * 16 14 12 20 20 C 1.50700 * 109.47481 * 185.74828 * 3 2 1 21 21 C 1.41375 * 128.01086 * 119.99996 * 20 3 2 22 22 C 1.50706 * 126.79941 * 0.03345 * 21 20 3 23 23 N 1.30179 * 106.39793 * 180.29613 * 21 20 3 24 24 O 1.20926 * 111.60033 * 359.53341 * 23 21 20 25 25 C 1.34038 * 111.56651 * 0.48659 * 24 23 21 26 26 C 1.50701 * 126.77619 * 179.69188 * 25 24 23 27 27 H 1.08999 * 109.46646 * 294.47936 * 1 2 3 28 28 H 1.08994 * 109.46962 * 54.47366 * 1 2 3 29 29 H 1.08996 * 109.47183 * 174.48001 * 1 2 3 30 30 H 1.09002 * 109.46961 * 239.99495 * 2 1 3 31 31 H 1.09002 * 109.47313 * 120.00479 * 2 1 3 32 32 H 1.08998 * 109.46799 * 84.67722 * 8 7 5 33 33 H 1.08999 * 109.47241 * 204.67815 * 8 7 5 34 34 H 1.09003 * 109.46869 * 324.68003 * 8 7 5 35 35 H 1.09003 * 109.46715 * 179.97438 * 11 9 7 36 36 H 1.09007 * 109.47251 * 299.99562 * 11 9 7 37 37 H 1.08991 * 109.47481 * 60.00103 * 11 9 7 38 38 H 0.97001 * 119.99520 * 179.97438 * 15 14 12 39 39 H 1.08995 * 109.47111 * 90.00305 * 22 21 20 40 40 H 1.09006 * 109.46692 * 210.00089 * 22 21 20 41 41 H 1.09000 * 109.47268 * 330.00074 * 22 21 20 42 42 H 1.09011 * 109.46682 * 270.02150 * 26 25 24 43 43 H 1.09002 * 109.47333 * 30.01525 * 26 25 24 44 44 H 1.08993 * 109.47612 * 150.02116 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5952 1.9851 -0.8341 5 6 1.6573 2.1107 1.2954 6 8 1.4540 1.4412 2.2861 7 7 1.5408 3.4521 1.3529 8 6 1.8921 4.2686 0.1883 9 6 1.0630 4.0939 2.5802 10 1 0.8531 3.3318 3.3307 11 6 -0.2152 4.8795 2.2803 12 6 2.1200 5.0337 3.0999 13 1 3.0542 5.1425 2.5690 14 6 1.8942 5.7556 4.2528 15 7 0.7564 5.6235 4.8990 16 14 3.2049 6.9201 4.8974 17 1 3.0014 8.2685 4.3094 18 1 3.1070 7.0053 6.3767 19 1 4.5479 6.4124 4.5186 20 6 3.5404 1.4448 -0.1423 21 6 4.3169 2.0350 -1.1657 22 6 3.8060 2.8038 -2.3570 23 7 5.5602 1.7779 -0.8782 24 8 5.6582 1.1432 0.1464 25 6 4.4570 0.8812 0.6804 26 6 4.1809 0.1113 1.9461 27 1 -0.3632 0.4258 0.9353 28 1 -0.3633 0.5971 -0.8363 29 1 -0.3633 -1.0229 -0.0988 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.0389 4.3230 -0.4878 33 1 2.1605 5.2728 0.5163 34 1 2.7382 3.8172 -0.3299 35 1 -0.5710 5.3566 3.1935 36 1 -0.0057 5.6416 1.5297 37 1 -0.9798 4.1998 1.9044 38 1 0.5977 6.1311 5.7102 39 1 3.7334 3.8612 -2.1030 40 1 4.4939 2.6774 -3.1931 41 1 2.8215 2.4288 -2.6365 42 1 4.0641 -0.9465 1.7098 43 1 5.0133 0.2392 2.6382 44 1 3.2656 0.4840 2.4058 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340981925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:53 Heat of formation + Delta-G solvation = 9.458333 kcal Electronic energy + Delta-G solvation = -25576.539307 eV Core-core repulsion = 22111.056101 eV Total energy + Delta-G solvation = -3465.483206 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.78910 -39.59327 -36.00981 -35.31323 -33.82284 -32.83549 -32.57658 -29.73591 -28.79783 -28.20988 -26.61311 -26.07084 -25.23782 -22.60560 -22.20307 -20.56641 -19.89702 -18.13219 -17.47163 -16.94896 -16.71177 -16.26927 -15.40605 -15.03949 -14.42800 -14.08313 -13.70217 -13.69359 -13.44012 -13.23624 -13.14495 -12.85516 -12.68605 -12.52087 -12.27370 -12.10771 -12.02388 -11.65963 -11.48731 -11.35219 -11.13982 -11.05407 -10.89261 -10.83409 -10.68534 -10.63221 -10.27752 -10.19016 -9.81699 -9.30437 -9.17437 -8.62972 -8.43636 -7.61432 -6.09720 -4.17368 1.60747 2.27537 3.17300 3.24714 3.32125 3.34954 3.38487 3.90225 4.25703 4.37731 4.57850 4.79399 4.95779 5.08130 5.21723 5.28496 5.33760 5.39897 5.43816 5.53033 5.61323 5.63619 5.71856 5.78078 5.83714 5.89240 5.97242 5.97531 6.05072 6.18923 6.28798 6.34567 6.42161 6.46104 6.71856 6.80195 7.03030 7.38905 7.49740 7.69373 7.98421 8.17585 8.40127 8.49447 8.80265 9.00535 9.49264 10.95448 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.005874 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.810310 B = 4765.961203 C = 5395.068977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C -0.029 4.029 4 H 0.096 0.904 5 C 0.515 3.485 6 O -0.545 6.545 7 N -0.586 5.586 8 C 0.078 3.922 9 C 0.258 3.742 10 H 0.064 0.936 11 C -0.146 4.146 12 C -0.525 4.525 13 H 0.058 0.942 14 C 0.066 3.934 15 N -0.887 5.887 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.193 4.193 21 C 0.027 3.973 22 C -0.078 4.078 23 N -0.371 5.371 24 O 0.091 5.909 25 C -0.005 4.005 26 C -0.094 4.094 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.029 0.971 37 H 0.011 0.989 38 H 0.263 0.737 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -8.377 -12.448 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C -0.051 4.051 4 H 0.114 0.886 5 C 0.301 3.699 6 O -0.425 6.425 7 N -0.316 5.316 8 C -0.066 4.066 9 C 0.158 3.842 10 H 0.082 0.918 11 C -0.205 4.205 12 C -0.563 4.563 13 H 0.076 0.924 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.198 4.198 21 C -0.132 4.132 22 C -0.136 4.136 23 N -0.078 5.078 24 O 0.028 5.972 25 C -0.069 4.069 26 C -0.151 4.151 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.048 0.952 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.933 -8.333 -12.319 15.159 hybrid contribution 0.036 0.880 0.420 0.976 sum 2.970 -7.453 -11.899 14.351 Atomic orbital electron populations 1.21788 0.95201 1.01493 1.02555 1.21417 0.96351 0.93725 1.02660 1.19729 0.88831 0.98419 0.98145 0.88596 1.20112 0.77796 0.82828 0.89128 1.90565 1.51720 1.63526 1.36704 1.48211 1.62855 1.04900 1.15668 1.21728 0.98629 0.97854 0.88389 1.18949 0.91889 0.92712 0.80634 0.91837 1.22091 0.97183 0.98829 1.02366 1.21302 1.01528 1.24176 1.09335 0.92428 1.24870 0.95626 0.96839 0.96300 1.69872 1.23294 1.41546 1.17837 0.86534 0.81979 0.80993 0.78165 1.20600 1.21025 1.19954 1.20437 0.96331 1.05722 0.97297 1.23352 0.89034 1.01457 0.99406 1.20237 1.01401 0.99241 0.92692 1.73804 1.20525 1.12581 1.00882 1.84775 1.30426 1.53568 1.28409 1.24353 0.83767 1.00378 0.98375 1.20790 1.05787 0.98581 0.89973 0.91540 0.93149 0.92660 0.91848 0.90278 0.93940 0.89928 0.92704 0.88822 0.95205 0.97033 0.92682 0.89795 0.90565 0.90049 0.89724 0.90204 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.63 37.16 0.36 -1.56 16 2 C -0.10 -1.35 4.90 -26.73 -0.13 -1.48 16 3 C -0.03 -0.43 1.66 -92.92 -0.15 -0.58 16 4 H 0.10 1.25 6.45 -51.92 -0.33 0.91 16 5 C 0.51 9.95 5.56 -10.99 -0.06 9.88 16 6 O -0.55 -11.99 12.23 5.55 0.07 -11.92 16 7 N -0.59 -12.13 2.75 -175.26 -0.48 -12.62 16 8 C 0.08 1.32 8.60 59.85 0.51 1.83 16 9 C 0.26 6.42 2.63 -69.08 -0.18 6.24 16 10 H 0.06 1.82 6.91 -51.93 -0.36 1.46 16 11 C -0.15 -3.42 8.97 37.16 0.33 -3.08 16 12 C -0.52 -14.06 7.96 -34.44 -0.27 -14.33 16 13 H 0.06 1.55 7.42 -52.49 -0.39 1.16 16 14 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 15 N -0.89 -24.79 11.32 55.43 0.63 -24.17 16 16 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.19 -2.93 4.21 -104.42 -0.44 -3.37 16 21 C 0.03 0.39 6.62 -82.10 -0.54 -0.16 16 22 C -0.08 -0.83 9.44 36.01 0.34 -0.49 16 23 N -0.37 -6.01 12.07 33.42 0.40 -5.60 16 24 O 0.09 1.47 11.20 17.18 0.19 1.67 16 25 C -0.01 -0.08 7.34 -35.30 -0.26 -0.34 16 26 C -0.09 -1.30 9.03 36.01 0.33 -0.97 16 27 H 0.07 1.01 7.06 -51.93 -0.37 0.65 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.09 6.21 -51.93 -0.32 0.77 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.51 7.10 -51.93 -0.37 1.14 16 34 H 0.05 0.83 3.71 -51.93 -0.19 0.63 16 35 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 36 H 0.03 0.64 7.67 -51.93 -0.40 0.25 16 37 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.08 0.84 7.28 -51.93 -0.38 0.46 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.70 7.55 -51.93 -0.39 0.31 16 42 H 0.08 0.93 8.12 -51.92 -0.42 0.51 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.12 2.03 4.73 -51.93 -0.25 1.78 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -30.39 343.86 -5.88 -36.27 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.58 Total: 1.83 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -0.27 Total: -6.72 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.55 Total: -42.39 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.26 Total: -10.26 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.39 -5.88 -36.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340981925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.727 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds