Wall clock time and date at job start Tue Mar 31 2020 07:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47582 * 2 1 4 4 H 1.09010 * 109.46884 * 305.74725 * 3 2 1 5 5 C 1.50704 * 109.47244 * 65.74378 * 3 2 1 6 6 O 1.21283 * 119.99678 * 24.50962 * 5 3 2 7 7 N 1.34770 * 119.99859 * 204.51355 * 5 3 2 8 8 C 1.46502 * 120.00538 * 354.99154 * 7 5 3 9 9 C 1.46509 * 119.99639 * 174.99791 * 7 5 3 10 10 H 1.08996 * 109.47298 * 359.97438 * 9 7 5 11 11 C 1.52999 * 109.46607 * 239.99544 * 9 7 5 12 12 C 1.50695 * 109.46988 * 119.99653 * 9 7 5 13 13 H 1.07999 * 120.00455 * 0.02562 * 12 9 7 14 14 C 1.37882 * 119.99821 * 179.97438 * 12 9 7 15 15 N 1.31513 * 119.99758 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99918 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46690 * 90.00717 * 16 14 12 18 18 H 1.48499 * 109.46893 * 210.00379 * 16 14 12 19 19 H 1.48493 * 109.47209 * 330.00635 * 16 14 12 20 20 C 1.50700 * 109.47481 * 185.74828 * 3 2 1 21 21 C 1.41375 * 128.01086 * 119.99996 * 20 3 2 22 22 C 1.50706 * 126.79941 * 0.03345 * 21 20 3 23 23 N 1.30179 * 106.39793 * 180.29613 * 21 20 3 24 24 O 1.20926 * 111.60033 * 359.53341 * 23 21 20 25 25 C 1.34038 * 111.56651 * 0.48659 * 24 23 21 26 26 C 1.50701 * 126.77619 * 179.69188 * 25 24 23 27 27 H 1.08999 * 109.46646 * 294.47936 * 1 2 3 28 28 H 1.08994 * 109.46962 * 54.47366 * 1 2 3 29 29 H 1.08996 * 109.47183 * 174.48001 * 1 2 3 30 30 H 1.09002 * 109.46961 * 239.99495 * 2 1 3 31 31 H 1.09002 * 109.47313 * 120.00479 * 2 1 3 32 32 H 1.08998 * 109.46799 * 84.67722 * 8 7 5 33 33 H 1.08999 * 109.47241 * 204.67815 * 8 7 5 34 34 H 1.09003 * 109.46869 * 324.68003 * 8 7 5 35 35 H 1.09003 * 109.46715 * 179.97438 * 11 9 7 36 36 H 1.09007 * 109.47251 * 299.99562 * 11 9 7 37 37 H 1.08991 * 109.47481 * 60.00103 * 11 9 7 38 38 H 0.97001 * 119.99520 * 179.97438 * 15 14 12 39 39 H 1.08995 * 109.47111 * 90.00305 * 22 21 20 40 40 H 1.09006 * 109.46692 * 210.00089 * 22 21 20 41 41 H 1.09000 * 109.47268 * 330.00074 * 22 21 20 42 42 H 1.09011 * 109.46682 * 270.02150 * 26 25 24 43 43 H 1.09002 * 109.47333 * 30.01525 * 26 25 24 44 44 H 1.08993 * 109.47612 * 150.02116 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5952 1.9851 -0.8341 5 6 1.6573 2.1107 1.2954 6 8 1.4540 1.4412 2.2861 7 7 1.5408 3.4521 1.3529 8 6 1.8921 4.2686 0.1883 9 6 1.0630 4.0939 2.5802 10 1 0.8531 3.3318 3.3307 11 6 -0.2152 4.8795 2.2803 12 6 2.1200 5.0337 3.0999 13 1 3.0542 5.1425 2.5690 14 6 1.8942 5.7556 4.2528 15 7 0.7564 5.6235 4.8990 16 14 3.2049 6.9201 4.8974 17 1 3.0014 8.2685 4.3094 18 1 3.1070 7.0053 6.3767 19 1 4.5479 6.4124 4.5186 20 6 3.5404 1.4448 -0.1423 21 6 4.3169 2.0350 -1.1657 22 6 3.8060 2.8038 -2.3570 23 7 5.5602 1.7779 -0.8782 24 8 5.6582 1.1432 0.1464 25 6 4.4570 0.8812 0.6804 26 6 4.1809 0.1113 1.9461 27 1 -0.3632 0.4258 0.9353 28 1 -0.3633 0.5971 -0.8363 29 1 -0.3633 -1.0229 -0.0988 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.0389 4.3230 -0.4878 33 1 2.1605 5.2728 0.5163 34 1 2.7382 3.8172 -0.3299 35 1 -0.5710 5.3566 3.1935 36 1 -0.0057 5.6416 1.5297 37 1 -0.9798 4.1998 1.9044 38 1 0.5977 6.1311 5.7102 39 1 3.7334 3.8612 -2.1030 40 1 4.4939 2.6774 -3.1931 41 1 2.8215 2.4288 -2.6365 42 1 4.0641 -0.9465 1.7098 43 1 5.0133 0.2392 2.6382 44 1 3.2656 0.4840 2.4058 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340981925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:52 Heat of formation + Delta-G solvation = -7.972322 kcal Electronic energy + Delta-G solvation = -25577.295157 eV Core-core repulsion = 22111.056101 eV Total energy + Delta-G solvation = -3466.239056 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.94253 -41.07746 -37.51353 -36.74038 -34.96998 -34.73597 -33.68642 -31.51997 -29.76991 -29.41359 -27.77127 -27.51709 -27.29026 -24.05464 -23.33775 -21.93270 -21.23922 -19.57865 -18.67042 -18.54040 -18.05637 -17.93071 -17.15419 -16.37779 -16.18119 -15.40476 -14.94182 -14.82064 -14.66131 -14.40411 -14.35469 -14.21409 -13.89036 -13.77846 -13.53700 -13.33403 -13.28874 -13.19384 -13.04140 -12.82430 -12.75172 -12.59847 -12.43494 -12.22736 -12.18571 -12.15196 -11.91657 -11.72215 -11.18521 -10.94874 -10.64666 -10.50990 -9.93905 -9.28089 -8.15982 -6.31491 0.42406 1.14495 1.37120 1.39256 1.48334 1.79058 2.13080 2.31230 2.49677 3.11731 3.21668 3.49096 3.64763 3.73685 3.96388 4.15475 4.28487 4.37358 4.42606 4.55712 4.56708 4.59724 4.67892 4.69757 4.75599 4.79870 4.82703 4.90299 4.92370 4.93529 5.00143 5.08664 5.10317 5.16820 5.26726 5.36517 5.43568 5.48253 5.63110 5.68298 6.05039 6.17863 6.76181 6.85911 7.24103 7.32338 7.50073 8.87708 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.005874 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.810310 B = 4765.961203 C = 5395.068977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C -0.015 4.015 4 H 0.122 0.878 5 C 0.508 3.492 6 O -0.579 6.579 7 N -0.598 5.598 8 C 0.076 3.924 9 C 0.265 3.735 10 H 0.014 0.986 11 C -0.132 4.132 12 C -0.536 4.536 13 H 0.051 0.949 14 C 0.020 3.980 15 N -0.913 5.913 16 Si 0.956 3.044 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.277 1.277 20 C -0.204 4.204 21 C 0.035 3.965 22 C -0.083 4.083 23 N -0.394 5.394 24 O 0.076 5.924 25 C -0.014 4.014 26 C -0.092 4.092 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.024 0.976 38 H 0.265 0.735 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.266 -8.271 -14.966 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.140 4.140 3 C -0.036 4.036 4 H 0.140 0.860 5 C 0.297 3.703 6 O -0.461 6.461 7 N -0.328 5.328 8 C -0.066 4.066 9 C 0.163 3.837 10 H 0.032 0.968 11 C -0.190 4.190 12 C -0.575 4.575 13 H 0.069 0.931 14 C -0.180 4.180 15 N -0.552 5.552 16 Si 0.781 3.219 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.202 1.202 20 C -0.209 4.209 21 C -0.125 4.125 22 C -0.140 4.140 23 N -0.104 5.104 24 O 0.016 5.984 25 C -0.078 4.078 26 C -0.149 4.149 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.105 0.895 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.238 -8.238 -14.851 17.288 hybrid contribution -0.058 0.796 1.215 1.453 sum 3.180 -7.442 -13.636 15.857 Atomic orbital electron populations 1.21760 0.94841 1.02787 1.01322 1.21451 0.96608 0.92572 1.03326 1.19689 0.88804 0.99272 0.95879 0.85972 1.20937 0.76713 0.82210 0.90484 1.90554 1.52795 1.64181 1.38564 1.48202 1.63300 1.05900 1.15425 1.21910 1.00753 0.96504 0.87462 1.18495 0.92311 0.91177 0.81724 0.96786 1.21867 0.96720 0.98986 1.01443 1.21524 1.01726 1.24550 1.09680 0.93083 1.25617 0.97452 0.98341 0.96556 1.69999 1.24771 1.42315 1.18132 0.85597 0.79239 0.79490 0.77545 1.19259 1.20826 1.20229 1.20561 0.96354 1.06201 0.97772 1.23953 0.88229 1.00361 0.99917 1.20485 1.02938 0.99136 0.91422 1.73803 1.21634 1.13683 1.01314 1.84756 1.30664 1.54142 1.28788 1.24689 0.83983 1.00353 0.98732 1.20760 1.04507 0.99984 0.89618 0.95075 0.91378 0.90778 0.89048 0.91664 0.90633 0.91530 0.90814 0.91514 0.93730 0.95736 0.92609 0.88997 0.89287 0.87496 0.86906 0.89495 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.63 71.98 0.69 -2.77 16 2 C -0.10 -2.43 4.90 30.59 0.15 -2.28 16 3 C -0.01 -0.40 1.66 -12.29 -0.02 -0.42 16 4 H 0.12 2.69 6.45 -2.38 -0.02 2.67 16 5 C 0.51 19.54 5.56 87.66 0.49 20.03 16 6 O -0.58 -26.40 12.23 -3.04 -0.04 -26.44 16 7 N -0.60 -24.57 2.75 -826.79 -2.28 -26.85 16 8 C 0.08 2.42 8.60 127.77 1.10 3.51 16 9 C 0.26 13.49 2.63 44.24 0.12 13.60 16 10 H 0.01 0.85 6.91 -2.39 -0.02 0.84 16 11 C -0.13 -6.19 8.97 71.98 0.65 -5.54 16 12 C -0.54 -29.22 7.96 25.60 0.20 -29.01 16 13 H 0.05 2.78 7.42 -2.91 -0.02 2.76 16 14 C 0.02 1.11 5.30 84.66 0.45 1.56 16 15 N -0.91 -52.17 11.32 21.45 0.24 -51.93 16 16 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 C -0.20 -5.80 4.21 -19.74 -0.08 -5.88 16 21 C 0.03 0.92 6.62 43.58 0.29 1.21 16 22 C -0.08 -1.42 9.44 71.24 0.67 -0.75 16 23 N -0.39 -12.18 12.07 -49.55 -0.60 -12.78 16 24 O 0.08 2.40 11.20 71.64 0.80 3.20 16 25 C -0.01 -0.43 7.34 25.04 0.18 -0.25 16 26 C -0.09 -2.52 9.03 71.24 0.64 -1.88 16 27 H 0.03 0.93 7.06 -2.39 -0.02 0.91 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.75 6.21 -2.39 -0.01 1.73 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 2.33 7.10 -2.39 -0.02 2.31 16 34 H 0.07 2.02 3.71 -2.39 -0.01 2.02 16 35 H 0.07 3.51 6.07 -2.39 -0.01 3.50 16 36 H 0.04 1.91 7.67 -2.38 -0.02 1.89 16 37 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 39 H 0.09 1.48 7.28 -2.39 -0.02 1.46 16 40 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.11 1.30 7.55 -2.39 -0.02 1.28 16 42 H 0.11 2.38 8.12 -2.38 -0.02 2.36 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.09 3.19 4.73 -2.39 -0.01 3.18 16 Total: -1.00 -68.36 343.86 6.69 -61.67 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.00 Total: 16.43 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 5.53 Total: -8.86 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -2.63 Total: -91.56 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.76 Total: -23.24 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -68.36 6.69 -61.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340981925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.693 kcal (2) G-P(sol) polarization free energy of solvation -68.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds