Wall clock time and date at job start Tue Mar 31 2020 07:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46985 * 2 1 4 4 H 1.09002 * 109.47523 * 304.61311 * 3 2 1 5 5 C 1.50702 * 109.47264 * 184.61526 * 3 2 1 6 6 O 1.21276 * 120.00442 * 240.00231 * 5 3 2 7 7 N 1.34776 * 119.99971 * 59.99744 * 5 3 2 8 8 C 1.46509 * 119.99927 * 0.02562 * 7 5 3 9 9 C 1.46503 * 120.00456 * 180.02562 * 7 5 3 10 10 H 1.09004 * 109.46698 * 0.02562 * 9 7 5 11 11 C 1.52994 * 109.47044 * 120.00008 * 9 7 5 12 12 C 1.50700 * 109.47339 * 240.00484 * 9 7 5 13 13 H 1.07999 * 119.99884 * 0.02562 * 12 9 7 14 14 C 1.37870 * 119.99763 * 179.97438 * 12 9 7 15 15 N 1.31518 * 120.00495 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00163 * 179.97438 * 14 12 9 17 17 H 1.48505 * 109.46852 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47154 * 120.00025 * 16 14 12 19 19 H 1.48496 * 109.47261 * 240.00346 * 16 14 12 20 20 C 1.50703 * 109.47384 * 64.61620 * 3 2 1 21 21 C 1.41385 * 128.00316 * 63.48526 * 20 3 2 22 22 C 1.50696 * 126.80362 * 0.03835 * 21 20 3 23 23 N 1.30172 * 106.39342 * 179.89827 * 21 20 3 24 24 O 1.20925 * 111.60360 * 0.39051 * 23 21 20 25 25 C 1.34036 * 111.56896 * 359.74528 * 24 23 21 26 26 C 1.50701 * 126.77680 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.47116 * 300.00168 * 1 2 3 28 28 H 1.09007 * 109.46904 * 60.00176 * 1 2 3 29 29 H 1.09000 * 109.46779 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47129 * 240.00389 * 2 1 3 31 31 H 1.08995 * 109.47160 * 120.00019 * 2 1 3 32 32 H 1.08997 * 109.46643 * 269.99502 * 8 7 5 33 33 H 1.09001 * 109.46880 * 29.99281 * 8 7 5 34 34 H 1.08998 * 109.46833 * 149.99732 * 8 7 5 35 35 H 1.08995 * 109.47573 * 180.02562 * 11 9 7 36 36 H 1.09004 * 109.47208 * 60.00476 * 11 9 7 37 37 H 1.09006 * 109.47493 * 300.00608 * 11 9 7 38 38 H 0.96994 * 120.00749 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.47097 * 95.38036 * 22 21 20 40 40 H 1.09003 * 109.47368 * 215.38005 * 22 21 20 41 41 H 1.09000 * 109.47190 * 335.37983 * 22 21 20 42 42 H 1.09000 * 109.46939 * 269.99536 * 26 25 24 43 43 H 1.08991 * 109.47107 * 30.00410 * 26 25 24 44 44 H 1.09003 * 109.46721 * 150.00197 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6108 1.9797 -0.8458 5 6 3.5427 1.4441 -0.1143 6 8 4.2169 1.9452 0.7604 7 7 4.1374 0.8885 -1.1886 8 6 3.3229 0.2834 -2.2456 9 6 5.5982 0.8895 -1.2996 10 1 6.0285 1.3790 -0.4259 11 6 6.1047 -0.5521 -1.3771 12 6 6.0069 1.6333 -2.5449 13 1 5.2539 2.0627 -3.1890 14 6 7.3422 1.7664 -2.8613 15 7 8.2593 1.2439 -2.0766 16 14 7.8489 2.6878 -4.4052 17 1 6.6366 3.1750 -5.1112 18 1 8.7031 3.8443 -4.0336 19 1 8.6096 1.7771 -5.2979 20 6 1.6332 2.1192 1.2836 21 6 2.0241 1.7914 2.6023 22 6 2.9483 0.6766 3.0192 23 7 1.4298 2.6455 3.3846 24 8 0.7456 3.4215 2.7585 25 6 0.8038 3.1783 1.4417 26 6 0.0875 3.9338 0.3522 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.1588 -0.7701 -2.0195 33 1 2.3630 0.7966 -2.3032 34 1 3.8412 0.3738 -3.2002 35 1 7.1916 -0.5515 -1.4593 36 1 5.6744 -1.0420 -2.2507 37 1 5.8091 -1.0901 -0.4764 38 1 9.1987 1.3373 -2.2994 39 1 3.9599 1.0664 3.1323 40 1 2.6109 0.2607 3.9686 41 1 2.9426 -0.1039 2.2583 42 1 -0.8854 3.4763 0.1721 43 1 -0.0496 4.9707 0.6587 44 1 0.6794 3.9005 -0.5625 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340981926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:56 Heat of formation + Delta-G solvation = 17.774438 kcal Electronic energy + Delta-G solvation = -25297.882377 eV Core-core repulsion = 21832.759785 eV Total energy + Delta-G solvation = -3465.122593 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.68840 -39.56498 -36.09666 -35.29957 -33.77206 -33.09961 -32.38337 -29.63217 -28.58582 -28.24719 -26.87261 -26.13924 -25.24011 -22.78122 -21.95237 -20.46812 -19.93713 -18.41594 -17.45096 -16.72194 -16.52419 -16.24745 -15.37592 -14.95453 -14.59514 -14.26251 -14.04882 -13.46942 -13.35127 -13.25024 -12.94804 -12.88545 -12.57955 -12.55938 -12.40106 -12.16177 -12.13987 -11.88311 -11.63061 -11.52086 -11.19424 -11.08852 -10.87525 -10.77724 -10.64550 -10.39957 -10.26109 -10.19438 -9.54051 -9.21795 -9.08417 -8.73736 -8.44584 -7.60837 -6.10056 -4.18121 1.65796 2.47875 3.23460 3.28990 3.30899 3.33018 3.35984 3.92030 4.36716 4.44444 4.63006 4.77854 4.88049 5.04009 5.17742 5.19373 5.21992 5.32957 5.39061 5.46125 5.50055 5.68936 5.70216 5.75732 5.83562 5.86142 5.90194 5.96038 6.02804 6.09957 6.16883 6.20360 6.36521 6.51687 6.72785 6.80657 7.03923 7.39883 7.51379 7.69139 7.99341 8.17406 8.50136 8.53550 8.80920 9.03886 9.48683 10.95239 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019927 B = 0.004547 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.797904 B = 6156.520574 C = 6197.670850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C -0.030 4.030 4 H 0.101 0.899 5 C 0.508 3.492 6 O -0.541 6.541 7 N -0.591 5.591 8 C 0.081 3.919 9 C 0.258 3.742 10 H 0.063 0.937 11 C -0.145 4.145 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.065 3.935 15 N -0.887 5.887 16 Si 0.897 3.103 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.163 4.163 21 C 0.057 3.943 22 C -0.072 4.072 23 N -0.378 5.378 24 O 0.090 5.910 25 C -0.040 4.040 26 C -0.071 4.071 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.029 0.971 37 H 0.010 0.990 38 H 0.263 0.737 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.720 -2.164 1.702 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C -0.052 4.052 4 H 0.119 0.881 5 C 0.294 3.706 6 O -0.419 6.419 7 N -0.322 5.322 8 C -0.063 4.063 9 C 0.159 3.841 10 H 0.081 0.919 11 C -0.204 4.204 12 C -0.564 4.564 13 H 0.078 0.922 14 C -0.138 4.138 15 N -0.525 5.525 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.167 4.167 21 C -0.102 4.102 22 C -0.129 4.129 23 N -0.086 5.086 24 O 0.027 5.973 25 C -0.104 4.104 26 C -0.129 4.129 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.048 0.952 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.150 -1.720 3.484 16.611 hybrid contribution 0.553 0.257 -1.716 1.821 sum -15.597 -1.464 1.768 15.765 Atomic orbital electron populations 1.21743 0.95237 1.01612 1.01784 1.21865 0.96413 0.94238 1.04135 1.19670 0.94671 0.97112 0.93784 0.88137 1.20141 0.88774 0.79135 0.82571 1.90657 1.65455 1.45759 1.39988 1.48188 1.09430 1.55705 1.18867 1.21755 0.94789 0.96533 0.93245 1.18930 0.72726 0.93813 0.98680 0.91944 1.22075 1.04734 0.96857 0.96720 1.21345 0.92074 1.34899 1.08075 0.92231 1.24891 0.96408 0.95506 0.96974 1.69884 1.00782 1.44612 1.37249 0.86456 0.78597 0.79608 0.82815 1.19825 1.20936 1.20923 1.20302 1.01754 0.99198 0.95448 1.23234 0.98956 0.98359 0.89674 1.20207 0.97877 0.93727 1.01096 1.73765 1.09846 1.04365 1.20631 1.84749 1.51824 1.44627 1.16103 1.24068 1.01751 0.98305 0.86249 1.20296 0.99664 0.99632 0.93263 0.92944 0.92562 0.92535 0.89353 0.91210 0.93506 0.92697 0.90123 0.88910 0.95188 0.97060 0.92731 0.89275 0.91514 0.90529 0.89705 0.89975 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.72 37.16 0.36 -1.03 16 2 C -0.13 -1.54 5.02 -26.73 -0.13 -1.67 16 3 C -0.03 -0.44 1.66 -92.92 -0.15 -0.60 16 4 H 0.10 1.27 6.36 -51.93 -0.33 0.94 16 5 C 0.51 9.99 6.80 -10.98 -0.07 9.91 16 6 O -0.54 -12.84 13.38 5.56 0.07 -12.77 16 7 N -0.59 -11.88 2.75 -175.26 -0.48 -12.36 16 8 C 0.08 1.24 7.80 59.85 0.47 1.71 16 9 C 0.26 6.39 2.64 -69.08 -0.18 6.21 16 10 H 0.06 1.82 6.90 -51.93 -0.36 1.46 16 11 C -0.15 -3.37 8.97 37.15 0.33 -3.04 16 12 C -0.53 -13.82 7.99 -34.44 -0.28 -14.10 16 13 H 0.06 1.54 7.33 -52.49 -0.38 1.16 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 16 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.16 -2.51 3.49 -104.42 -0.36 -2.88 16 21 C 0.06 0.96 6.67 -82.10 -0.55 0.41 16 22 C -0.07 -1.12 9.04 36.00 0.33 -0.79 16 23 N -0.38 -6.55 12.07 33.42 0.40 -6.15 16 24 O 0.09 1.40 11.20 17.19 0.19 1.59 16 25 C -0.04 -0.55 7.49 -35.30 -0.26 -0.82 16 26 C -0.07 -0.64 10.19 36.01 0.37 -0.27 16 27 H 0.05 0.55 7.37 -51.93 -0.38 0.16 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 1.00 4.45 -51.93 -0.23 0.77 16 31 H 0.07 0.89 5.73 -51.93 -0.30 0.59 16 32 H 0.05 0.63 6.87 -51.93 -0.36 0.28 16 33 H 0.05 0.68 6.06 -51.93 -0.31 0.36 16 34 H 0.08 1.35 7.02 -51.93 -0.36 0.98 16 35 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 36 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 37 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.09 1.56 7.75 -51.93 -0.40 1.15 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.13 5.72 -51.93 -0.30 0.84 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.78 7.34 -51.93 -0.38 0.40 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -31.85 344.15 -5.74 -37.59 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.49 Total: 0.71 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.24 Total: -5.32 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.55 Total: -42.68 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.27 Total: -11.17 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.85 -5.74 -37.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340981926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.363 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds