Wall clock time and date at job start Tue Mar 31 2020 07:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46985 * 2 1 4 4 H 1.09002 * 109.47523 * 304.61311 * 3 2 1 5 5 C 1.50702 * 109.47264 * 184.61526 * 3 2 1 6 6 O 1.21276 * 120.00442 * 240.00231 * 5 3 2 7 7 N 1.34776 * 119.99971 * 59.99744 * 5 3 2 8 8 C 1.46509 * 119.99927 * 0.02562 * 7 5 3 9 9 C 1.46503 * 120.00456 * 180.02562 * 7 5 3 10 10 H 1.09004 * 109.46698 * 0.02562 * 9 7 5 11 11 C 1.52994 * 109.47044 * 120.00008 * 9 7 5 12 12 C 1.50700 * 109.47339 * 240.00484 * 9 7 5 13 13 H 1.07999 * 119.99884 * 0.02562 * 12 9 7 14 14 C 1.37870 * 119.99763 * 179.97438 * 12 9 7 15 15 N 1.31518 * 120.00495 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00163 * 179.97438 * 14 12 9 17 17 H 1.48505 * 109.46852 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47154 * 120.00025 * 16 14 12 19 19 H 1.48496 * 109.47261 * 240.00346 * 16 14 12 20 20 C 1.50703 * 109.47384 * 64.61620 * 3 2 1 21 21 C 1.41385 * 128.00316 * 63.48526 * 20 3 2 22 22 C 1.50696 * 126.80362 * 0.03835 * 21 20 3 23 23 N 1.30172 * 106.39342 * 179.89827 * 21 20 3 24 24 O 1.20925 * 111.60360 * 0.39051 * 23 21 20 25 25 C 1.34036 * 111.56896 * 359.74528 * 24 23 21 26 26 C 1.50701 * 126.77680 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.47116 * 300.00168 * 1 2 3 28 28 H 1.09007 * 109.46904 * 60.00176 * 1 2 3 29 29 H 1.09000 * 109.46779 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47129 * 240.00389 * 2 1 3 31 31 H 1.08995 * 109.47160 * 120.00019 * 2 1 3 32 32 H 1.08997 * 109.46643 * 269.99502 * 8 7 5 33 33 H 1.09001 * 109.46880 * 29.99281 * 8 7 5 34 34 H 1.08998 * 109.46833 * 149.99732 * 8 7 5 35 35 H 1.08995 * 109.47573 * 180.02562 * 11 9 7 36 36 H 1.09004 * 109.47208 * 60.00476 * 11 9 7 37 37 H 1.09006 * 109.47493 * 300.00608 * 11 9 7 38 38 H 0.96994 * 120.00749 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.47097 * 95.38036 * 22 21 20 40 40 H 1.09003 * 109.47368 * 215.38005 * 22 21 20 41 41 H 1.09000 * 109.47190 * 335.37983 * 22 21 20 42 42 H 1.09000 * 109.46939 * 269.99536 * 26 25 24 43 43 H 1.08991 * 109.47107 * 30.00410 * 26 25 24 44 44 H 1.09003 * 109.46721 * 150.00197 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6108 1.9797 -0.8458 5 6 3.5427 1.4441 -0.1143 6 8 4.2169 1.9452 0.7604 7 7 4.1374 0.8885 -1.1886 8 6 3.3229 0.2834 -2.2456 9 6 5.5982 0.8895 -1.2996 10 1 6.0285 1.3790 -0.4259 11 6 6.1047 -0.5521 -1.3771 12 6 6.0069 1.6333 -2.5449 13 1 5.2539 2.0627 -3.1890 14 6 7.3422 1.7664 -2.8613 15 7 8.2593 1.2439 -2.0766 16 14 7.8489 2.6878 -4.4052 17 1 6.6366 3.1750 -5.1112 18 1 8.7031 3.8443 -4.0336 19 1 8.6096 1.7771 -5.2979 20 6 1.6332 2.1192 1.2836 21 6 2.0241 1.7914 2.6023 22 6 2.9483 0.6766 3.0192 23 7 1.4298 2.6455 3.3846 24 8 0.7456 3.4215 2.7585 25 6 0.8038 3.1783 1.4417 26 6 0.0875 3.9338 0.3522 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.1588 -0.7701 -2.0195 33 1 2.3630 0.7966 -2.3032 34 1 3.8412 0.3738 -3.2002 35 1 7.1916 -0.5515 -1.4593 36 1 5.6744 -1.0420 -2.2507 37 1 5.8091 -1.0901 -0.4764 38 1 9.1987 1.3373 -2.2994 39 1 3.9599 1.0664 3.1323 40 1 2.6109 0.2607 3.9686 41 1 2.9426 -0.1039 2.2583 42 1 -0.8854 3.4763 0.1721 43 1 -0.0496 4.9707 0.6587 44 1 0.6794 3.9005 -0.5625 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340981926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:55 Heat of formation + Delta-G solvation = -1.597466 kcal Electronic energy + Delta-G solvation = -25298.722406 eV Core-core repulsion = 21832.759785 eV Total energy + Delta-G solvation = -3465.962621 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.89305 -41.04336 -37.48329 -36.85244 -35.12095 -34.57151 -33.61441 -31.33992 -29.80187 -29.31489 -27.93633 -27.49859 -27.26501 -23.99730 -23.30400 -21.86859 -21.08216 -19.94149 -18.68429 -18.46659 -17.85168 -17.77162 -17.01053 -16.24073 -16.14117 -15.70625 -15.17901 -14.84603 -14.43621 -14.31687 -14.22673 -14.09418 -13.91093 -13.71473 -13.65646 -13.47714 -13.22812 -13.10996 -12.99533 -12.90897 -12.75103 -12.65606 -12.57759 -12.18955 -12.15315 -12.08374 -11.75158 -11.41585 -11.14881 -10.78366 -10.59962 -10.42469 -9.97464 -9.25582 -8.13175 -6.29371 0.54969 1.23882 1.41159 1.43349 1.54012 1.85800 2.25173 2.35572 2.54721 3.15264 3.24340 3.57782 3.59585 3.84234 4.01163 4.09894 4.26318 4.42358 4.45933 4.55804 4.57734 4.63591 4.74356 4.74948 4.76192 4.81152 4.84005 4.87490 4.92932 4.98172 5.06766 5.11129 5.12363 5.23776 5.28156 5.31409 5.48868 5.51849 5.64563 5.70644 6.07799 6.19373 6.79945 6.89132 7.35603 7.36906 7.54181 8.91168 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019927 B = 0.004547 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.797904 B = 6156.520574 C = 6197.670850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C -0.014 4.014 4 H 0.130 0.870 5 C 0.499 3.501 6 O -0.593 6.593 7 N -0.596 5.596 8 C 0.074 3.926 9 C 0.264 3.736 10 H 0.005 0.995 11 C -0.131 4.131 12 C -0.533 4.533 13 H 0.064 0.936 14 C 0.013 3.987 15 N -0.920 5.920 16 Si 0.963 3.037 17 H -0.261 1.261 18 H -0.289 1.289 19 H -0.276 1.276 20 C -0.187 4.187 21 C 0.036 3.964 22 C -0.067 4.067 23 N -0.405 5.405 24 O 0.085 5.915 25 C -0.025 4.025 26 C -0.073 4.073 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.740 -2.156 -0.684 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C -0.036 4.036 4 H 0.147 0.853 5 C 0.287 3.713 6 O -0.474 6.474 7 N -0.327 5.327 8 C -0.068 4.068 9 C 0.161 3.839 10 H 0.023 0.977 11 C -0.189 4.189 12 C -0.572 4.572 13 H 0.082 0.918 14 C -0.186 4.186 15 N -0.559 5.559 16 Si 0.788 3.212 17 H -0.185 1.185 18 H -0.216 1.216 19 H -0.201 1.201 20 C -0.191 4.191 21 C -0.122 4.122 22 C -0.124 4.124 23 N -0.114 5.114 24 O 0.024 5.976 25 C -0.089 4.089 26 C -0.130 4.130 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.136 0.864 43 H 0.115 0.885 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.215 -1.732 1.074 19.323 hybrid contribution 1.478 0.286 -0.927 1.768 sum -17.738 -1.446 0.147 17.797 Atomic orbital electron populations 1.21695 0.92806 1.02761 1.02345 1.21891 0.98373 0.92111 1.03959 1.19641 0.90240 0.99302 0.94382 0.85252 1.21109 0.91044 0.77718 0.81425 1.90640 1.67215 1.47815 1.41740 1.48146 1.07985 1.56136 1.20410 1.22060 0.95452 0.98223 0.91021 1.18475 0.75852 0.93802 0.95728 0.97681 1.21851 1.02843 0.96351 0.97878 1.21629 0.92349 1.34855 1.08360 0.91797 1.25738 0.96559 0.96376 0.99957 1.70038 1.00998 1.45859 1.38991 0.85433 0.78393 0.78065 0.79271 1.18524 1.21566 1.20112 1.20473 1.03013 1.00469 0.95140 1.23509 0.99223 0.98623 0.90825 1.20134 0.96252 0.93759 1.02249 1.73742 1.10932 1.05126 1.21608 1.84707 1.51499 1.44238 1.17198 1.24907 1.00551 0.97260 0.86174 1.20608 1.00709 1.00131 0.91523 0.94018 0.90288 0.91176 0.88282 0.92677 0.91090 0.88798 0.91335 0.91787 0.93316 0.96221 0.92812 0.92169 0.89770 0.90088 0.86399 0.88532 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.72 71.98 0.70 -1.37 16 2 C -0.13 -2.64 5.02 30.59 0.15 -2.48 16 3 C -0.01 -0.38 1.66 -12.29 -0.02 -0.40 16 4 H 0.13 2.70 6.36 -2.39 -0.02 2.68 16 5 C 0.50 19.56 6.80 87.66 0.60 20.15 16 6 O -0.59 -29.44 13.38 -3.02 -0.04 -29.49 16 7 N -0.60 -23.64 2.75 -826.78 -2.28 -25.92 16 8 C 0.07 2.07 7.80 127.77 1.00 3.07 16 9 C 0.26 13.37 2.64 44.24 0.12 13.49 16 10 H 0.01 0.32 6.90 -2.38 -0.02 0.31 16 11 C -0.13 -6.16 8.97 71.98 0.65 -5.52 16 12 C -0.53 -28.25 7.99 25.60 0.20 -28.05 16 13 H 0.06 3.25 7.33 -2.91 -0.02 3.23 16 14 C 0.01 0.70 5.30 84.65 0.45 1.15 16 15 N -0.92 -52.93 11.32 21.45 0.24 -52.68 16 16 Si 0.96 42.45 29.54 68.60 2.03 44.47 16 17 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 20 C -0.19 -5.54 3.49 -19.73 -0.07 -5.61 16 21 C 0.04 1.25 6.67 43.58 0.29 1.54 16 22 C -0.07 -2.17 9.04 71.23 0.64 -1.53 16 23 N -0.40 -14.16 12.07 -49.56 -0.60 -14.76 16 24 O 0.09 2.60 11.20 71.66 0.80 3.40 16 25 C -0.03 -0.64 7.49 25.04 0.19 -0.45 16 26 C -0.07 -1.02 10.19 71.24 0.73 -0.29 16 27 H 0.04 0.73 7.37 -2.39 -0.02 0.71 16 28 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.10 1.85 4.45 -2.39 -0.01 1.84 16 31 H 0.05 1.32 5.73 -2.39 -0.01 1.31 16 32 H 0.07 1.65 6.87 -2.39 -0.02 1.64 16 33 H 0.09 1.87 6.06 -2.39 -0.01 1.86 16 34 H 0.07 2.11 7.02 -2.39 -0.02 2.09 16 35 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 36 H 0.05 2.05 7.67 -2.38 -0.02 2.04 16 37 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.06 2.29 7.75 -2.39 -0.02 2.27 16 40 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.08 2.49 5.72 -2.39 -0.01 2.48 16 42 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.10 1.27 7.34 -2.39 -0.02 1.25 16 Total: -1.00 -73.99 344.15 6.79 -67.20 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 1.01 Total: 14.07 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 5.62 Total: -6.30 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -2.63 Total: -93.36 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: 0.76 Total: -26.08 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -73.99 6.79 -67.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340981926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.607 kcal (2) G-P(sol) polarization free energy of solvation -73.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds