Wall clock time and date at job start Tue Mar 31 2020 07:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47248 * 2 1 4 4 H 1.09006 * 109.47034 * 305.69325 * 3 2 1 5 5 C 1.50697 * 109.47188 * 65.69475 * 3 2 1 6 6 O 1.21277 * 120.00328 * 21.94232 * 5 3 2 7 7 N 1.34784 * 120.00017 * 201.94773 * 5 3 2 8 8 C 1.46499 * 119.99976 * 4.94177 * 7 5 3 9 9 C 1.46505 * 119.99885 * 184.94392 * 7 5 3 10 10 H 1.08993 * 109.47175 * 359.97438 * 9 7 5 11 11 C 1.53007 * 109.46679 * 119.99963 * 9 7 5 12 12 C 1.50697 * 109.46840 * 239.99862 * 9 7 5 13 13 H 1.07998 * 120.00547 * 359.97438 * 12 9 7 14 14 C 1.37878 * 119.99616 * 180.02562 * 12 9 7 15 15 N 1.31518 * 120.00087 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 120.00030 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46974 * 59.99472 * 16 14 12 18 18 H 1.48503 * 109.47372 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47185 * 299.99747 * 16 14 12 20 20 C 1.50693 * 109.47360 * 185.69473 * 3 2 1 21 21 C 1.41386 * 128.00763 * 299.67811 * 20 3 2 22 22 C 1.50700 * 126.79719 * 0.03410 * 21 20 3 23 23 N 1.30170 * 106.39679 * 179.89114 * 21 20 3 24 24 O 1.20919 * 111.60793 * 0.39319 * 23 21 20 25 25 C 1.34046 * 111.56626 * 359.74439 * 24 23 21 26 26 C 1.50700 * 126.77951 * 180.02562 * 25 24 23 27 27 H 1.08999 * 109.47224 * 184.19061 * 1 2 3 28 28 H 1.09003 * 109.46916 * 304.19129 * 1 2 3 29 29 H 1.08998 * 109.46981 * 64.19274 * 1 2 3 30 30 H 1.08995 * 109.47130 * 239.99634 * 2 1 3 31 31 H 1.09010 * 109.46952 * 119.99827 * 2 1 3 32 32 H 1.09002 * 109.47279 * 275.29341 * 8 7 5 33 33 H 1.09003 * 109.46750 * 35.29038 * 8 7 5 34 34 H 1.08996 * 109.46939 * 155.28646 * 8 7 5 35 35 H 1.09004 * 109.46420 * 179.97438 * 11 9 7 36 36 H 1.08993 * 109.47347 * 60.00068 * 11 9 7 37 37 H 1.08996 * 109.46921 * 299.99475 * 11 9 7 38 38 H 0.96998 * 119.99526 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.47151 * 90.00340 * 22 21 20 40 40 H 1.09007 * 109.46921 * 209.99738 * 22 21 20 41 41 H 1.08997 * 109.47481 * 329.99776 * 22 21 20 42 42 H 1.08997 * 109.46797 * 269.99912 * 26 25 24 43 43 H 1.08997 * 109.47098 * 29.99725 * 26 25 24 44 44 H 1.08998 * 109.47031 * 149.99990 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8347 5 6 1.6562 2.1110 1.2949 6 8 1.4067 1.4394 2.2734 7 7 1.5900 3.4553 1.3654 8 6 1.7847 4.2627 0.1586 9 6 1.3233 4.1092 2.6491 10 1 1.2070 3.3526 3.4250 11 6 2.4923 5.0300 3.0049 12 6 0.0578 4.9209 2.5459 13 1 -0.4926 4.9475 1.6171 14 6 -0.3968 5.6305 3.6372 15 7 0.2736 5.5986 4.7682 16 14 -1.9651 6.6373 3.5092 17 1 -3.1000 5.7439 3.1639 18 1 -2.2355 7.3000 4.8104 19 1 -1.8069 7.6678 2.4518 20 6 3.5404 1.4448 -0.1410 21 6 4.4969 0.8629 0.7224 22 6 4.2207 0.1002 1.9925 23 7 5.6631 1.1138 0.2014 24 8 5.5660 1.7522 -0.8209 25 6 4.2852 2.0100 -1.1211 26 6 3.7747 2.7766 -2.3139 27 1 -0.3633 -1.0249 0.0751 28 1 -0.3633 0.5775 0.8501 29 1 -0.3633 0.4474 -0.9252 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8901 32 1 2.8506 4.4235 -0.0029 33 1 1.3619 3.7407 -0.6998 34 1 1.2864 5.2244 0.2805 35 1 2.2937 5.5168 3.9597 36 1 2.6082 5.7866 2.2289 37 1 3.4076 4.4428 3.0795 38 1 -0.0465 6.0975 5.5359 39 1 4.1056 -0.9590 1.7625 40 1 5.0524 0.2334 2.6845 41 1 3.3045 0.4744 2.4492 42 1 3.7007 3.8343 -2.0613 43 1 4.4633 2.6498 -3.1492 44 1 2.7908 2.4001 -2.5937 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340981927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:59 Heat of formation + Delta-G solvation = 10.172638 kcal Electronic energy + Delta-G solvation = -25522.130214 eV Core-core repulsion = 22056.677982 eV Total energy + Delta-G solvation = -3465.452231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.82837 -39.56882 -36.02894 -35.19736 -33.82010 -32.87521 -32.75386 -29.70086 -28.59457 -28.35219 -26.68636 -26.09677 -25.23216 -22.58941 -22.27152 -20.28931 -20.05138 -18.31580 -17.53935 -17.03488 -16.45632 -16.32328 -15.40658 -15.09411 -14.40231 -14.11152 -13.93727 -13.62945 -13.39764 -13.24098 -13.05960 -12.84594 -12.71978 -12.52385 -12.28954 -12.20645 -11.97945 -11.67755 -11.50437 -11.37559 -11.15945 -11.06394 -10.92297 -10.84738 -10.65197 -10.51325 -10.28878 -10.18879 -9.77136 -9.27737 -9.19139 -8.69757 -8.43573 -7.61170 -6.09224 -4.17493 1.52090 2.30515 3.10281 3.25791 3.31473 3.32135 3.39082 3.89652 4.34074 4.37711 4.52704 4.80346 4.92692 5.05663 5.21263 5.23423 5.24967 5.29897 5.35700 5.46895 5.64451 5.69988 5.74574 5.77224 5.80612 5.86993 5.95441 5.99788 6.04204 6.14922 6.30931 6.36119 6.47805 6.52977 6.72875 6.81789 7.04145 7.39729 7.50436 7.69183 7.98624 8.17799 8.39978 8.49847 8.80453 9.01789 9.49005 10.96022 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.005038 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.331129 B = 5556.443300 C = 5767.082033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 C -0.033 4.033 4 H 0.098 0.902 5 C 0.516 3.484 6 O -0.543 6.543 7 N -0.588 5.588 8 C 0.084 3.916 9 C 0.260 3.740 10 H 0.063 0.937 11 C -0.146 4.146 12 C -0.526 4.526 13 H 0.059 0.941 14 C 0.065 3.935 15 N -0.887 5.887 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.181 4.181 21 C 0.041 3.959 22 C -0.092 4.092 23 N -0.372 5.372 24 O 0.094 5.906 25 C -0.031 4.031 26 C -0.075 4.075 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.028 0.972 37 H 0.009 0.991 38 H 0.264 0.736 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.032 -6.633 -13.929 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.140 4.140 3 C -0.055 4.055 4 H 0.116 0.884 5 C 0.302 3.698 6 O -0.422 6.422 7 N -0.318 5.318 8 C -0.061 4.061 9 C 0.160 3.840 10 H 0.081 0.919 11 C -0.204 4.204 12 C -0.565 4.565 13 H 0.077 0.923 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.186 4.186 21 C -0.118 4.118 22 C -0.149 4.149 23 N -0.079 5.079 24 O 0.030 5.970 25 C -0.095 4.095 26 C -0.133 4.133 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.048 0.952 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.152 -7.156 -12.848 15.941 hybrid contribution -1.520 0.849 -0.165 1.749 sum 4.632 -6.307 -13.013 15.185 Atomic orbital electron populations 1.21797 0.95089 1.01947 1.02252 1.21378 0.96382 0.93648 1.02574 1.19776 0.88690 0.98600 0.98432 0.88417 1.20037 0.77834 0.82812 0.89138 1.90595 1.50404 1.63377 1.37837 1.48211 1.67756 1.04796 1.11032 1.21655 0.99762 0.97604 0.87028 1.18928 0.93234 0.92134 0.79750 0.91910 1.22086 0.95792 0.99081 1.03459 1.21266 1.08026 1.29100 0.98102 0.92308 1.24892 0.97210 0.96505 0.95121 1.69869 1.38872 1.41924 1.01876 0.86564 0.83437 0.80142 0.77284 1.20230 1.21170 1.20248 1.20486 0.96429 1.05022 0.96617 1.23448 0.87954 1.00833 0.99580 1.20479 1.04788 0.98648 0.91030 1.73810 1.23224 1.12625 0.98255 1.84775 1.26666 1.53518 1.32002 1.24161 0.83799 1.01698 0.99843 1.20391 1.01567 0.99397 0.91922 0.92660 0.91314 0.93243 0.91961 0.90370 0.94195 0.93038 0.89809 0.88813 0.95241 0.97240 0.92612 0.90520 0.91026 0.87522 0.89119 0.89865 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.75 37.16 0.36 -1.68 16 2 C -0.10 -1.38 4.94 -26.73 -0.13 -1.51 16 3 C -0.03 -0.49 1.82 -92.93 -0.17 -0.65 16 4 H 0.10 1.22 5.20 -51.93 -0.27 0.95 16 5 C 0.52 10.08 5.48 -10.98 -0.06 10.02 16 6 O -0.54 -12.31 12.40 5.56 0.07 -12.24 16 7 N -0.59 -12.12 2.75 -175.26 -0.48 -12.61 16 8 C 0.08 1.35 8.99 59.85 0.54 1.89 16 9 C 0.26 6.50 2.63 -69.08 -0.18 6.32 16 10 H 0.06 1.83 6.91 -51.93 -0.36 1.47 16 11 C -0.15 -3.50 8.97 37.16 0.33 -3.17 16 12 C -0.53 -13.91 7.96 -34.44 -0.27 -14.18 16 13 H 0.06 1.52 7.42 -52.49 -0.39 1.13 16 14 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 15 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 16 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 17 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 20 C -0.18 -2.66 4.84 -104.42 -0.51 -3.17 16 21 C 0.04 0.66 7.20 -82.10 -0.59 0.07 16 22 C -0.09 -1.41 9.26 36.01 0.33 -1.08 16 23 N -0.37 -6.12 12.07 33.42 0.40 -5.72 16 24 O 0.09 1.37 11.20 17.16 0.19 1.57 16 25 C -0.03 -0.40 7.49 -35.30 -0.26 -0.66 16 26 C -0.08 -0.60 10.17 36.01 0.37 -0.23 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.14 6.74 -51.93 -0.35 0.79 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.16 6.47 -51.92 -0.34 0.82 16 32 H 0.04 0.59 7.78 -51.93 -0.40 0.19 16 33 H 0.05 0.66 6.22 -51.93 -0.32 0.34 16 34 H 0.08 1.45 7.10 -51.93 -0.37 1.08 16 35 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 36 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 41 H 0.11 1.88 5.17 -51.93 -0.27 1.62 16 42 H 0.09 0.67 7.78 -51.93 -0.40 0.26 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.60 7.39 -51.93 -0.38 0.21 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -31.02 348.62 -5.96 -36.98 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.66 Total: 1.70 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.34 Total: -6.38 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.55 Total: -42.58 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.26 Total: -10.68 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.02 -5.96 -36.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340981927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.156 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds