Wall clock time and date at job start Tue Mar 31 2020 07:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47248 * 2 1 4 4 H 1.09006 * 109.47034 * 305.69325 * 3 2 1 5 5 C 1.50697 * 109.47188 * 65.69475 * 3 2 1 6 6 O 1.21277 * 120.00328 * 21.94232 * 5 3 2 7 7 N 1.34784 * 120.00017 * 201.94773 * 5 3 2 8 8 C 1.46499 * 119.99976 * 4.94177 * 7 5 3 9 9 C 1.46505 * 119.99885 * 184.94392 * 7 5 3 10 10 H 1.08993 * 109.47175 * 359.97438 * 9 7 5 11 11 C 1.53007 * 109.46679 * 119.99963 * 9 7 5 12 12 C 1.50697 * 109.46840 * 239.99862 * 9 7 5 13 13 H 1.07998 * 120.00547 * 359.97438 * 12 9 7 14 14 C 1.37878 * 119.99616 * 180.02562 * 12 9 7 15 15 N 1.31518 * 120.00087 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 120.00030 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46974 * 59.99472 * 16 14 12 18 18 H 1.48503 * 109.47372 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47185 * 299.99747 * 16 14 12 20 20 C 1.50693 * 109.47360 * 185.69473 * 3 2 1 21 21 C 1.41386 * 128.00763 * 299.67811 * 20 3 2 22 22 C 1.50700 * 126.79719 * 0.03410 * 21 20 3 23 23 N 1.30170 * 106.39679 * 179.89114 * 21 20 3 24 24 O 1.20919 * 111.60793 * 0.39319 * 23 21 20 25 25 C 1.34046 * 111.56626 * 359.74439 * 24 23 21 26 26 C 1.50700 * 126.77951 * 180.02562 * 25 24 23 27 27 H 1.08999 * 109.47224 * 184.19061 * 1 2 3 28 28 H 1.09003 * 109.46916 * 304.19129 * 1 2 3 29 29 H 1.08998 * 109.46981 * 64.19274 * 1 2 3 30 30 H 1.08995 * 109.47130 * 239.99634 * 2 1 3 31 31 H 1.09010 * 109.46952 * 119.99827 * 2 1 3 32 32 H 1.09002 * 109.47279 * 275.29341 * 8 7 5 33 33 H 1.09003 * 109.46750 * 35.29038 * 8 7 5 34 34 H 1.08996 * 109.46939 * 155.28646 * 8 7 5 35 35 H 1.09004 * 109.46420 * 179.97438 * 11 9 7 36 36 H 1.08993 * 109.47347 * 60.00068 * 11 9 7 37 37 H 1.08996 * 109.46921 * 299.99475 * 11 9 7 38 38 H 0.96998 * 119.99526 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.47151 * 90.00340 * 22 21 20 40 40 H 1.09007 * 109.46921 * 209.99738 * 22 21 20 41 41 H 1.08997 * 109.47481 * 329.99776 * 22 21 20 42 42 H 1.08997 * 109.46797 * 269.99912 * 26 25 24 43 43 H 1.08997 * 109.47098 * 29.99725 * 26 25 24 44 44 H 1.08998 * 109.47031 * 149.99990 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8347 5 6 1.6562 2.1110 1.2949 6 8 1.4067 1.4394 2.2734 7 7 1.5900 3.4553 1.3654 8 6 1.7847 4.2627 0.1586 9 6 1.3233 4.1092 2.6491 10 1 1.2070 3.3526 3.4250 11 6 2.4923 5.0300 3.0049 12 6 0.0578 4.9209 2.5459 13 1 -0.4926 4.9475 1.6171 14 6 -0.3968 5.6305 3.6372 15 7 0.2736 5.5986 4.7682 16 14 -1.9651 6.6373 3.5092 17 1 -3.1000 5.7439 3.1639 18 1 -2.2355 7.3000 4.8104 19 1 -1.8069 7.6678 2.4518 20 6 3.5404 1.4448 -0.1410 21 6 4.4969 0.8629 0.7224 22 6 4.2207 0.1002 1.9925 23 7 5.6631 1.1138 0.2014 24 8 5.5660 1.7522 -0.8209 25 6 4.2852 2.0100 -1.1211 26 6 3.7747 2.7766 -2.3139 27 1 -0.3633 -1.0249 0.0751 28 1 -0.3633 0.5775 0.8501 29 1 -0.3633 0.4474 -0.9252 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8901 32 1 2.8506 4.4235 -0.0029 33 1 1.3619 3.7407 -0.6998 34 1 1.2864 5.2244 0.2805 35 1 2.2937 5.5168 3.9597 36 1 2.6082 5.7866 2.2289 37 1 3.4076 4.4428 3.0795 38 1 -0.0465 6.0975 5.5359 39 1 4.1056 -0.9590 1.7625 40 1 5.0524 0.2334 2.6845 41 1 3.3045 0.4744 2.4492 42 1 3.7007 3.8343 -2.0613 43 1 4.4633 2.6498 -3.1492 44 1 2.7908 2.4001 -2.5937 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340981927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:58 Heat of formation + Delta-G solvation = -8.124042 kcal Electronic energy + Delta-G solvation = -25522.923617 eV Core-core repulsion = 22056.677982 eV Total energy + Delta-G solvation = -3466.245635 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.97012 -41.05410 -37.52066 -36.66267 -35.01192 -34.62482 -33.83499 -31.49962 -29.80006 -29.39066 -27.74498 -27.50675 -27.28557 -24.06938 -23.41340 -21.86572 -21.11037 -19.77361 -18.69683 -18.59999 -18.12939 -17.66918 -17.08611 -16.49353 -16.10320 -15.24840 -15.15230 -14.92989 -14.52997 -14.42375 -14.31662 -14.12410 -13.91607 -13.79681 -13.56073 -13.36433 -13.26606 -13.20130 -13.01549 -12.83717 -12.74447 -12.62462 -12.41102 -12.26017 -12.18377 -12.11316 -11.89529 -11.67133 -11.19109 -10.97179 -10.59081 -10.45582 -9.95587 -9.27573 -8.13252 -6.29846 0.49040 1.12152 1.42550 1.44935 1.52172 1.81819 2.25886 2.33383 2.52378 3.14799 3.17919 3.50942 3.67269 3.80346 3.92239 4.12174 4.27760 4.39373 4.47271 4.52413 4.54348 4.61557 4.67449 4.71688 4.76663 4.80141 4.81614 4.85794 4.89769 4.95887 5.02881 5.06734 5.09189 5.17699 5.30226 5.36067 5.43304 5.47893 5.60072 5.68971 6.03959 6.17387 6.78600 6.87567 7.31233 7.34767 7.52418 8.90925 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.005038 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.331129 B = 5556.443300 C = 5767.082033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.015 4.015 4 H 0.130 0.870 5 C 0.507 3.493 6 O -0.585 6.585 7 N -0.599 5.599 8 C 0.079 3.921 9 C 0.266 3.734 10 H 0.008 0.992 11 C -0.130 4.130 12 C -0.535 4.535 13 H 0.065 0.935 14 C 0.014 3.986 15 N -0.920 5.920 16 Si 0.964 3.036 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.261 1.261 20 C -0.205 4.205 21 C 0.021 3.979 22 C -0.088 4.088 23 N -0.396 5.396 24 O 0.093 5.907 25 C -0.005 4.005 26 C -0.081 4.081 27 H 0.067 0.933 28 H 0.027 0.973 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.009 0.991 38 H 0.263 0.737 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 -5.999 -17.767 19.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.138 4.138 3 C -0.037 4.037 4 H 0.148 0.852 5 C 0.296 3.704 6 O -0.467 6.467 7 N -0.329 5.329 8 C -0.064 4.064 9 C 0.164 3.836 10 H 0.026 0.974 11 C -0.189 4.189 12 C -0.573 4.573 13 H 0.083 0.917 14 C -0.186 4.186 15 N -0.559 5.559 16 Si 0.789 3.211 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.185 1.185 20 C -0.209 4.209 21 C -0.138 4.138 22 C -0.145 4.145 23 N -0.104 5.104 24 O 0.030 5.970 25 C -0.069 4.069 26 C -0.138 4.138 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.711 -6.520 -16.729 18.841 hybrid contribution -1.332 0.613 1.017 1.784 sum 4.380 -5.907 -15.712 17.348 Atomic orbital electron populations 1.21764 0.95000 1.02331 1.01620 1.21406 0.96387 0.93050 1.03004 1.19677 0.89005 0.98936 0.96043 0.85243 1.20959 0.76619 0.82265 0.90604 1.90577 1.51856 1.64237 1.39999 1.48201 1.68100 1.05742 1.10859 1.21910 1.01136 0.96986 0.86324 1.18445 0.93417 0.90683 0.81041 0.97420 1.21867 0.95422 0.99033 1.02544 1.21553 1.08564 1.28912 0.98320 0.91731 1.25755 1.00345 0.97716 0.94756 1.70027 1.40511 1.42803 1.02563 0.85521 0.79299 0.78768 0.77507 1.20133 1.21250 1.18535 1.20473 0.96143 1.06756 0.97559 1.23642 0.88731 1.01391 0.99997 1.20373 1.03209 0.99785 0.91155 1.73803 1.23570 1.13824 0.99241 1.84747 1.27825 1.53080 1.31365 1.24967 0.82461 0.99486 1.00013 1.20770 1.03159 0.99355 0.90494 0.91367 0.95415 0.90736 0.88854 0.92543 0.92489 0.88963 0.90926 0.91456 0.93588 0.97223 0.92753 0.88651 0.91233 0.90251 0.87734 0.87412 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.75 71.98 0.70 -3.05 16 2 C -0.10 -2.54 4.94 30.59 0.15 -2.39 16 3 C -0.02 -0.41 1.82 -12.29 -0.02 -0.43 16 4 H 0.13 2.62 5.20 -2.38 -0.01 2.61 16 5 C 0.51 19.93 5.48 87.66 0.48 20.41 16 6 O -0.59 -28.01 12.40 -3.02 -0.04 -28.05 16 7 N -0.60 -24.57 2.75 -826.79 -2.28 -26.84 16 8 C 0.08 2.33 8.99 127.77 1.15 3.47 16 9 C 0.27 13.77 2.63 44.25 0.12 13.88 16 10 H 0.01 0.49 6.91 -2.39 -0.02 0.47 16 11 C -0.13 -6.41 8.97 71.98 0.65 -5.77 16 12 C -0.54 -28.58 7.96 25.60 0.20 -28.37 16 13 H 0.06 3.29 7.42 -2.91 -0.02 3.27 16 14 C 0.01 0.74 5.30 84.65 0.45 1.19 16 15 N -0.92 -53.22 11.32 21.45 0.24 -52.98 16 16 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 20 C -0.20 -5.57 4.84 -19.73 -0.10 -5.66 16 21 C 0.02 0.65 7.20 43.58 0.31 0.97 16 22 C -0.09 -2.79 9.26 71.24 0.66 -2.13 16 23 N -0.40 -12.71 12.07 -49.56 -0.60 -13.31 16 24 O 0.09 2.50 11.20 71.58 0.80 3.31 16 25 C -0.01 -0.12 7.49 25.04 0.19 0.07 16 26 C -0.08 -0.84 10.17 71.24 0.72 -0.12 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.03 0.91 6.74 -2.39 -0.02 0.89 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.67 6.47 -2.38 -0.02 1.66 16 32 H 0.06 1.49 7.78 -2.39 -0.02 1.47 16 33 H 0.09 1.93 6.22 -2.39 -0.01 1.92 16 34 H 0.07 2.33 7.10 -2.39 -0.02 2.31 16 35 H 0.07 3.68 6.07 -2.38 -0.01 3.67 16 36 H 0.05 2.05 7.67 -2.39 -0.02 2.03 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.08 3.00 5.17 -2.39 -0.01 2.98 16 42 H 0.10 0.92 7.78 -2.39 -0.02 0.90 16 43 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.11 0.73 7.39 -2.39 -0.02 0.71 16 Total: -1.00 -72.30 348.62 6.82 -65.48 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 1.00 Total: 15.80 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 5.66 Total: -7.93 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -2.63 Total: -93.12 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: 0.76 Total: -24.74 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -72.30 6.82 -65.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340981927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.353 kcal (2) G-P(sol) polarization free energy of solvation -72.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds