Wall clock time and date at job start Tue Mar 31 2020 07:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47242 * 2 1 4 4 H 1.09004 * 109.46941 * 306.03982 * 3 2 1 5 5 C 1.50709 * 109.47305 * 186.04177 * 3 2 1 6 6 O 1.21276 * 119.99737 * 249.01415 * 5 3 2 7 7 N 1.34779 * 119.99514 * 69.01407 * 5 3 2 8 8 C 1.46496 * 119.99550 * 184.34928 * 7 5 3 9 9 C 1.46496 * 120.00294 * 4.34700 * 7 5 3 10 10 H 1.09000 * 109.47328 * 356.78997 * 9 7 5 11 11 C 1.53004 * 109.47010 * 236.79314 * 9 7 5 12 12 C 1.50703 * 109.47228 * 116.79194 * 9 7 5 13 13 H 1.08000 * 119.99528 * 0.02562 * 12 9 7 14 14 C 1.37873 * 120.00073 * 179.97438 * 12 9 7 15 15 N 1.31515 * 120.00021 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 120.00020 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.47110 * 60.00487 * 16 14 12 18 18 H 1.48499 * 109.47525 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47270 * 300.00798 * 16 14 12 20 20 C 1.50696 * 109.47718 * 66.04078 * 3 2 1 21 21 C 1.41381 * 128.00744 * 61.05066 * 20 3 2 22 22 C 1.50704 * 126.79779 * 0.03254 * 21 20 3 23 23 N 1.30170 * 106.39956 * 179.90033 * 21 20 3 24 24 O 1.20926 * 111.60343 * 0.39019 * 23 21 20 25 25 C 1.34046 * 111.56690 * 359.74463 * 24 23 21 26 26 C 1.50700 * 126.77689 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.46850 * 60.00214 * 1 2 3 28 28 H 1.08992 * 109.47337 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47203 * 300.00225 * 1 2 3 30 30 H 1.08997 * 109.46960 * 239.99157 * 2 1 3 31 31 H 1.09001 * 109.46850 * 119.99786 * 2 1 3 32 32 H 1.09001 * 109.47542 * 85.11765 * 8 7 5 33 33 H 1.09003 * 109.47081 * 325.11872 * 8 7 5 34 34 H 1.08997 * 109.47303 * 205.12113 * 8 7 5 35 35 H 1.08992 * 109.47391 * 60.00061 * 11 9 7 36 36 H 1.09001 * 109.46800 * 180.02562 * 11 9 7 37 37 H 1.09000 * 109.46816 * 299.99996 * 11 9 7 38 38 H 0.96998 * 119.99742 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.46691 * 95.64137 * 22 21 20 40 40 H 1.09006 * 109.46833 * 215.63033 * 22 21 20 41 41 H 1.08998 * 109.47200 * 335.63328 * 22 21 20 42 42 H 1.08999 * 109.46701 * 269.99906 * 26 25 24 43 43 H 1.08999 * 109.47308 * 29.99903 * 26 25 24 44 44 H 1.09003 * 109.46997 * 149.99951 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5911 1.9865 -0.8310 5 6 3.5397 1.4451 -0.1496 6 8 4.2410 1.7877 0.7787 7 7 4.1013 1.0667 -1.3149 8 6 5.5589 0.9777 -1.4305 9 6 3.2541 0.7444 -2.4658 10 1 2.2056 0.8118 -2.1754 11 6 3.5608 -0.6766 -2.9428 12 6 3.5300 1.7194 -3.5813 13 1 4.2634 2.5006 -3.4466 14 6 2.8469 1.6133 -4.7743 15 7 1.9542 0.6616 -4.9385 16 14 3.1884 2.8222 -6.1568 17 1 4.6170 2.7313 -6.5522 18 1 2.3298 2.4955 -7.3235 19 1 2.8898 4.2012 -5.6936 20 6 1.6636 2.1085 1.2983 21 6 2.0477 1.7414 2.6085 22 6 2.9322 0.5856 2.9994 23 7 1.4882 2.6011 3.4099 24 8 0.8302 3.4135 2.8023 25 6 0.8740 3.1939 1.4807 26 6 0.1820 3.9965 0.4092 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8928 0.0027 -1.0756 33 1 6.0197 1.7608 -0.8284 34 1 5.8490 1.1034 -2.4737 35 1 3.3612 -1.3817 -2.1360 36 1 2.9307 -0.9162 -3.7994 37 1 4.6092 -0.7440 -3.2332 38 1 1.4734 0.5873 -5.7776 39 1 3.9571 0.9369 3.1195 40 1 2.5811 0.1613 3.9401 41 1 2.8983 -0.1773 2.2216 42 1 -0.8079 3.5793 0.2251 43 1 0.0849 5.0317 0.7364 44 1 0.7687 3.9591 -0.5087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340981928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:02 Heat of formation + Delta-G solvation = 12.222305 kcal Electronic energy + Delta-G solvation = -25627.887763 eV Core-core repulsion = 22162.524411 eV Total energy + Delta-G solvation = -3465.363351 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.58676 -39.53592 -35.93221 -35.54860 -33.56740 -32.74309 -32.49872 -29.23352 -28.78759 -28.26951 -27.29953 -25.55378 -25.32846 -22.51569 -21.65827 -20.78080 -19.86331 -18.29675 -17.35630 -16.79368 -16.52615 -16.19665 -15.26528 -14.70216 -14.47152 -14.36598 -13.87982 -13.44088 -13.23195 -13.11196 -12.91718 -12.82040 -12.61753 -12.43576 -12.27396 -12.02374 -11.92300 -11.76841 -11.55934 -11.35088 -11.10064 -10.99008 -10.97761 -10.80871 -10.61863 -10.33250 -10.28795 -10.18291 -9.47414 -9.41269 -9.09858 -8.69908 -8.57961 -7.67636 -6.24074 -4.32804 1.76461 2.56593 3.18748 3.24452 3.26015 3.34091 3.40586 3.93958 4.27269 4.53753 4.77302 4.99837 5.06968 5.08091 5.31585 5.37411 5.41249 5.54222 5.58155 5.70152 5.74782 5.82035 5.95318 5.98155 6.03541 6.11896 6.14643 6.20134 6.24546 6.27818 6.41086 6.42057 6.45149 6.53120 6.64036 6.69008 6.84386 7.15276 7.34718 7.60867 7.80626 8.05685 8.38686 8.61625 8.69950 8.97244 9.35878 10.80107 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.005495 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.502166 B = 5094.623188 C = 5516.565750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.027 4.027 4 H 0.111 0.889 5 C 0.515 3.485 6 O -0.564 6.564 7 N -0.590 5.590 8 C 0.095 3.905 9 C 0.250 3.750 10 H 0.059 0.941 11 C -0.151 4.151 12 C -0.532 4.532 13 H 0.061 0.939 14 C 0.069 3.931 15 N -0.887 5.887 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.164 4.164 21 C 0.055 3.945 22 C -0.069 4.069 23 N -0.382 5.382 24 O 0.087 5.913 25 C -0.037 4.037 26 C -0.074 4.074 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.014 0.986 36 H 0.095 0.905 37 H 0.033 0.967 38 H 0.265 0.735 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.351 -0.506 7.124 7.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.049 4.049 4 H 0.129 0.871 5 C 0.302 3.698 6 O -0.445 6.445 7 N -0.321 5.321 8 C -0.048 4.048 9 C 0.149 3.851 10 H 0.077 0.923 11 C -0.210 4.210 12 C -0.571 4.571 13 H 0.079 0.921 14 C -0.134 4.134 15 N -0.525 5.525 16 Si 0.724 3.276 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.168 4.168 21 C -0.104 4.104 22 C -0.126 4.126 23 N -0.090 5.090 24 O 0.025 5.975 25 C -0.100 4.100 26 C -0.131 4.131 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.033 0.967 36 H 0.113 0.887 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.120 -0.234 8.746 9.289 hybrid contribution 0.379 0.400 -1.760 1.845 sum -2.741 0.166 6.985 7.506 Atomic orbital electron populations 1.21721 0.95123 1.01614 1.01835 1.21704 0.96686 0.93805 1.03473 1.19606 0.93980 0.97752 0.93528 0.87105 1.20235 0.89644 0.77346 0.82570 1.90593 1.64081 1.49612 1.40207 1.48211 1.07111 1.64729 1.12008 1.21378 0.81096 0.99942 1.02383 1.19169 0.90484 0.93124 0.82311 0.92327 1.22141 1.01123 0.96503 1.01212 1.21334 1.23525 1.14027 0.98194 0.92118 1.24859 0.94720 0.95574 0.98257 1.69835 1.24802 1.31724 1.26123 0.86576 0.78398 0.81389 0.81223 1.20176 1.21115 1.20165 1.20405 1.02356 0.98467 0.95577 1.23216 0.99175 0.98375 0.89604 1.20190 0.98118 0.93106 1.01176 1.73745 1.10948 1.03237 1.21089 1.84739 1.53223 1.43002 1.16537 1.24143 1.01784 0.98285 0.85816 1.20347 1.00298 0.98743 0.93737 0.91964 0.92618 0.93300 0.89302 0.91714 0.94262 0.92426 0.90520 0.96748 0.88678 0.94783 0.92459 0.89626 0.91727 0.90417 0.89536 0.90124 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.74 37.16 0.36 -1.61 16 2 C -0.12 -1.85 4.89 -26.73 -0.13 -1.98 16 3 C -0.03 -0.47 1.59 -92.92 -0.15 -0.61 16 4 H 0.11 1.96 6.13 -51.93 -0.32 1.64 16 5 C 0.51 10.26 6.83 -10.98 -0.08 10.19 16 6 O -0.56 -12.24 13.46 5.56 0.07 -12.17 16 7 N -0.59 -11.97 2.75 -175.26 -0.48 -12.45 16 8 C 0.10 1.77 9.30 59.84 0.56 2.33 16 9 C 0.25 5.42 1.67 -69.08 -0.12 5.30 16 10 H 0.06 1.30 4.60 -51.93 -0.24 1.06 16 11 C -0.15 -3.18 8.64 37.16 0.32 -2.86 16 12 C -0.53 -12.93 8.01 -34.44 -0.28 -13.20 16 13 H 0.06 1.52 7.64 -52.49 -0.40 1.12 16 14 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -22.18 11.32 55.43 0.63 -21.55 16 16 Si 0.90 19.48 29.54 -169.99 -5.02 14.46 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 C -0.16 -2.77 3.61 -104.42 -0.38 -3.15 16 21 C 0.06 0.96 6.65 -82.10 -0.55 0.41 16 22 C -0.07 -1.05 8.99 36.01 0.32 -0.73 16 23 N -0.38 -6.80 12.07 33.42 0.40 -6.39 16 24 O 0.09 1.44 11.20 17.16 0.19 1.64 16 25 C -0.04 -0.57 7.49 -35.30 -0.26 -0.83 16 26 C -0.07 -0.85 10.18 36.01 0.37 -0.49 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.65 7.42 -51.93 -0.39 0.27 16 30 H 0.09 1.50 5.05 -51.93 -0.26 1.23 16 31 H 0.06 0.96 5.44 -51.93 -0.28 0.68 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.07 7.51 -51.93 -0.39 0.68 16 34 H 0.08 1.43 7.26 -51.93 -0.38 1.05 16 35 H 0.01 0.26 7.33 -51.93 -0.38 -0.12 16 36 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 37 H 0.03 0.70 7.53 -51.93 -0.39 0.31 16 38 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 39 H 0.09 1.40 7.68 -51.93 -0.40 1.00 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.15 5.52 -51.93 -0.29 0.87 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.15 7.37 -51.93 -0.38 0.77 16 LS Contribution 344.25 15.07 5.19 5.19 Total: -1.00 -27.72 344.25 -5.60 -33.31 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.48 Total: 3.62 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.10 Total: -5.65 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.55 Total: -40.40 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.27 Total: -10.53 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.72 -5.60 -33.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340981928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.536 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds