Wall clock time and date at job start Tue Mar 31 2020 07:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50704 * 119.99630 * 2 1 4 4 C 1.53002 * 109.47104 * 124.99745 * 3 2 1 5 5 H 1.09000 * 109.46759 * 55.00036 * 4 3 2 6 6 C 1.52996 * 109.46937 * 174.99718 * 4 3 2 7 7 C 1.53004 * 109.46997 * 185.00231 * 6 4 3 8 8 N 1.46500 * 109.47051 * 294.99818 * 4 3 2 9 9 C 1.34783 * 119.99597 * 154.99906 * 8 4 3 10 10 O 1.21349 * 120.00206 * 359.97438 * 9 8 4 11 11 C 1.49448 * 119.99633 * 179.97438 * 9 8 4 12 12 O 1.21349 * 119.99869 * 5.10079 * 11 9 8 13 13 N 1.34774 * 119.99966 * 185.09478 * 11 9 8 14 14 C 1.46494 * 120.00151 * 184.56233 * 13 11 9 15 15 C 1.53003 * 109.47135 * 184.69950 * 14 13 11 16 16 C 1.50702 * 115.55074 * 294.79594 * 15 14 13 17 17 H 1.07993 * 119.99653 * 121.52798 * 16 15 14 18 18 C 1.37869 * 120.00010 * 301.25145 * 16 15 14 19 19 N 1.31521 * 120.00014 * 173.15781 * 18 16 15 20 20 Si 1.86800 * 120.00428 * 353.15867 * 18 16 15 21 21 H 1.48505 * 109.47428 * 94.23745 * 20 18 16 22 22 H 1.48493 * 109.47456 * 214.24117 * 20 18 16 23 23 H 1.48503 * 109.46930 * 334.24258 * 20 18 16 24 24 C 1.53001 * 117.49671 * 80.46850 * 15 14 13 25 25 C 1.53003 * 117.49736 * 149.12698 * 15 14 13 26 26 H 1.07997 * 119.99630 * 179.97438 * 1 2 3 27 27 H 1.07990 * 120.00109 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00093 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47485 * 4.99864 * 3 2 1 30 30 H 1.08999 * 109.46968 * 244.99478 * 3 2 1 31 31 H 1.08997 * 109.47441 * 305.00143 * 6 4 3 32 32 H 1.09000 * 109.47164 * 65.00375 * 6 4 3 33 33 H 1.09000 * 109.47046 * 60.00072 * 7 6 4 34 34 H 1.09001 * 109.47299 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46783 * 300.00020 * 7 6 4 36 36 H 0.96995 * 120.00213 * 335.00279 * 8 4 3 37 37 H 0.97009 * 119.99791 * 4.56178 * 13 11 9 38 38 H 1.09008 * 109.47462 * 64.70268 * 14 13 11 39 39 H 1.08995 * 109.47447 * 304.69904 * 14 13 11 40 40 H 0.97003 * 119.99559 * 179.97438 * 19 18 16 41 41 H 1.08998 * 117.49449 * 215.00109 * 24 15 14 42 42 H 1.08998 * 117.49956 * 0.02631 * 24 15 14 43 43 H 1.09006 * 117.49989 * 359.97438 * 25 15 14 44 44 H 1.08998 * 117.49998 * 144.97353 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 1 3.6827 0.4575 1.1404 6 6 3.8874 2.6018 1.1110 7 6 4.9419 2.5700 2.2192 8 7 2.2785 1.3225 2.4362 9 6 2.8473 0.8477 3.5621 10 8 3.9859 0.4287 3.5365 11 6 2.0757 0.8372 4.8419 12 8 0.9085 1.1690 4.8494 13 7 2.6763 0.4592 5.9877 14 6 1.8961 0.3527 7.2231 15 6 2.8301 0.0234 8.3893 16 6 3.5070 -1.3213 8.3203 17 1 4.5851 -1.3839 8.3236 18 6 2.7498 -2.4719 8.2587 19 7 3.3340 -3.6339 8.0631 20 14 0.8942 -2.3804 8.4529 21 1 0.2597 -2.2951 7.1129 22 1 0.4093 -3.5965 9.1537 23 1 0.5383 -1.1767 9.2465 24 6 3.6159 1.1786 9.0131 25 6 2.4452 0.5502 9.7732 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4026 -0.9313 31 1 4.3815 2.6540 0.1408 32 1 3.2495 3.4759 1.2414 33 1 5.5798 1.6959 2.0888 34 1 5.5489 3.4740 2.1692 35 1 4.4477 2.5178 3.1894 36 1 1.3682 1.6570 2.4565 37 1 3.6252 0.2576 5.9944 38 1 1.1541 -0.4388 7.1172 39 1 1.3923 1.2995 7.4174 40 1 2.8012 -4.4434 8.0202 41 1 4.6223 0.9659 9.3734 42 1 3.4670 2.1732 8.5929 43 1 1.5267 1.1319 9.8528 44 1 2.6811 -0.0759 10.6337 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342265392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:15 Heat of formation + Delta-G solvation = -35.701352 kcal Electronic energy + Delta-G solvation = -24191.047932 eV Core-core repulsion = 20723.606455 eV Total energy + Delta-G solvation = -3467.441477 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49705 -38.68437 -37.06274 -36.84910 -34.07682 -33.47926 -32.28012 -32.21358 -29.00216 -27.43356 -25.57654 -24.28114 -23.32402 -21.63089 -20.85996 -20.23493 -19.79625 -19.38546 -18.03706 -16.92604 -16.39259 -16.00025 -15.73078 -15.20336 -15.08019 -14.63590 -14.35654 -13.95355 -13.79345 -13.60590 -13.32330 -13.03443 -12.91526 -12.66205 -12.37536 -12.24380 -12.14016 -11.63595 -11.37293 -11.22588 -11.07077 -10.99761 -10.88977 -10.72406 -10.60357 -10.30374 -9.65144 -9.57527 -9.29003 -9.20797 -9.07862 -8.89118 -8.51217 -8.44605 -6.19080 -4.20829 1.77790 2.09834 2.66626 3.24637 3.35532 3.39868 3.57223 3.98396 4.35271 4.41375 4.67040 4.74278 4.87479 5.00013 5.02229 5.09816 5.19095 5.24467 5.37468 5.47794 5.60153 5.65338 5.69862 5.86198 5.88745 5.89860 6.05010 6.08221 6.11164 6.32180 6.36573 6.40049 6.44349 6.45277 6.56663 6.64884 6.80291 6.90161 7.07583 7.26032 7.63711 7.82279 8.12619 8.39410 8.45555 8.84055 9.43719 10.92019 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.004326 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.610658 B = 6470.729739 C = 7101.489581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.156 4.156 3 C -0.101 4.101 4 C 0.146 3.854 5 H 0.094 0.906 6 C -0.134 4.134 7 C -0.148 4.148 8 N -0.699 5.699 9 C 0.509 3.491 10 O -0.509 6.509 11 C 0.496 3.504 12 O -0.542 6.542 13 N -0.665 5.665 14 C 0.149 3.851 15 C -0.018 4.018 16 C -0.490 4.490 17 H 0.080 0.920 18 C 0.083 3.917 19 N -0.888 5.888 20 Si 0.867 3.133 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.251 1.251 24 C -0.179 4.179 25 C -0.186 4.186 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.409 0.591 37 H 0.420 0.580 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.266 0.734 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 11.771 -14.695 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.174 4.174 3 C -0.138 4.138 4 C 0.042 3.958 5 H 0.112 0.888 6 C -0.172 4.172 7 C -0.205 4.205 8 N -0.353 5.353 9 C 0.290 3.710 10 O -0.383 6.383 11 C 0.275 3.725 12 O -0.421 6.421 13 N -0.315 5.315 14 C 0.026 3.974 15 C -0.019 4.019 16 C -0.527 4.527 17 H 0.098 0.902 18 C -0.121 4.121 19 N -0.524 5.524 20 Si 0.695 3.305 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.175 1.175 24 C -0.217 4.217 25 C -0.225 4.225 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.128 0.872 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.245 0.755 37 H 0.257 0.743 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.568 11.457 -14.699 18.813 hybrid contribution -1.107 -0.192 0.149 1.133 sum -3.675 11.265 -14.550 18.765 Atomic orbital electron populations 1.23860 0.95907 1.01962 1.00881 1.22908 0.96121 0.98298 1.00053 1.21077 0.98466 0.96196 0.98097 1.21114 0.92892 0.99662 0.82179 0.88789 1.21979 0.97917 0.97317 1.00001 1.21829 0.98522 1.01409 0.98786 1.45768 1.18385 1.63263 1.07880 1.20263 0.86834 0.78572 0.85295 1.90782 1.17337 1.44494 1.85691 1.20066 0.87314 0.79840 0.85255 1.90703 1.16496 1.48463 1.86477 1.45733 1.14731 1.63722 1.07344 1.21285 0.93526 0.99635 0.82943 1.19578 0.97811 0.95310 0.89243 1.20257 0.94490 0.86267 1.51724 0.90190 1.24923 0.98388 0.95203 0.93545 1.69899 1.36274 0.98475 1.47753 0.87055 0.86328 0.78370 0.78782 1.20477 1.21756 1.17485 1.22795 0.96539 0.96307 1.06016 1.23073 0.97402 1.04162 0.97827 0.88461 0.88583 0.87224 0.90764 0.89207 0.90962 0.91779 0.91852 0.93457 0.92468 0.75476 0.74283 0.92094 0.92431 0.92405 0.89467 0.90827 0.91090 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 14.32 29.01 0.42 -1.30 16 2 C -0.16 -1.43 9.25 -36.03 -0.33 -1.77 16 3 C -0.10 -0.78 5.20 -27.88 -0.14 -0.93 16 4 C 0.15 1.48 2.24 -67.93 -0.15 1.33 16 5 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 6 C -0.13 -1.22 5.61 -26.73 -0.15 -1.37 16 7 C -0.15 -1.72 8.52 37.16 0.32 -1.40 16 8 N -0.70 -8.78 4.74 -54.24 -0.26 -9.04 16 9 C 0.51 8.31 6.45 -11.58 -0.07 8.24 16 10 O -0.51 -9.16 13.64 5.50 0.07 -9.09 16 11 C 0.50 9.35 7.88 -11.59 -0.09 9.26 16 12 O -0.54 -10.94 16.47 5.50 0.09 -10.85 16 13 N -0.66 -13.37 5.46 -60.73 -0.33 -13.70 16 14 C 0.15 3.19 5.08 -4.04 -0.02 3.17 16 15 C -0.02 -0.40 0.85 -155.66 -0.13 -0.53 16 16 C -0.49 -13.00 9.19 -34.44 -0.32 -13.31 16 17 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 18 C 0.08 2.32 5.46 -17.82 -0.10 2.22 16 19 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 20 Si 0.87 21.26 24.69 -169.99 -4.20 17.06 16 21 H -0.28 -6.94 6.96 56.52 0.39 -6.54 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.25 -5.76 6.11 56.52 0.35 -5.42 16 24 C -0.18 -3.43 9.96 -26.69 -0.27 -3.70 16 25 C -0.19 -3.74 8.69 -26.69 -0.23 -3.97 16 26 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 27 H 0.10 0.77 7.84 -52.49 -0.41 0.36 16 28 H 0.11 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.07 0.51 7.79 -51.93 -0.40 0.11 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.80 7.85 -51.93 -0.41 0.39 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.79 5.65 -51.93 -0.29 0.49 16 36 H 0.41 4.81 8.08 -40.82 -0.33 4.48 16 37 H 0.42 8.49 7.83 -40.82 -0.32 8.17 16 38 H 0.06 1.43 4.27 -51.92 -0.22 1.21 16 39 H 0.06 1.14 8.06 -51.93 -0.42 0.73 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 360.40 15.07 5.43 5.43 Total: -1.00 -30.28 360.40 -6.75 -37.03 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -7.05 Total: 12.83 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.28 Total: -4.08 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.18 Total: -48.33 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: 0.17 Total: -19.93 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.20 Total: 17.06 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.28 -6.75 -37.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342265392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.328 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds