Wall clock time and date at job start Tue Mar 31 2020 07:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50704 * 119.99630 * 2 1 4 4 C 1.53002 * 109.47104 * 124.99745 * 3 2 1 5 5 H 1.09000 * 109.46759 * 55.00036 * 4 3 2 6 6 C 1.52996 * 109.46937 * 174.99718 * 4 3 2 7 7 C 1.53004 * 109.46997 * 185.00231 * 6 4 3 8 8 N 1.46500 * 109.47051 * 294.99818 * 4 3 2 9 9 C 1.34783 * 119.99597 * 154.99906 * 8 4 3 10 10 O 1.21349 * 120.00206 * 359.97438 * 9 8 4 11 11 C 1.49448 * 119.99633 * 179.97438 * 9 8 4 12 12 O 1.21349 * 119.99869 * 5.10079 * 11 9 8 13 13 N 1.34774 * 119.99966 * 185.09478 * 11 9 8 14 14 C 1.46494 * 120.00151 * 184.56233 * 13 11 9 15 15 C 1.53003 * 109.47135 * 184.69950 * 14 13 11 16 16 C 1.50702 * 115.55074 * 294.79594 * 15 14 13 17 17 H 1.07993 * 119.99653 * 121.52798 * 16 15 14 18 18 C 1.37869 * 120.00010 * 301.25145 * 16 15 14 19 19 N 1.31521 * 120.00014 * 173.15781 * 18 16 15 20 20 Si 1.86800 * 120.00428 * 353.15867 * 18 16 15 21 21 H 1.48505 * 109.47428 * 94.23745 * 20 18 16 22 22 H 1.48493 * 109.47456 * 214.24117 * 20 18 16 23 23 H 1.48503 * 109.46930 * 334.24258 * 20 18 16 24 24 C 1.53001 * 117.49671 * 80.46850 * 15 14 13 25 25 C 1.53003 * 117.49736 * 149.12698 * 15 14 13 26 26 H 1.07997 * 119.99630 * 179.97438 * 1 2 3 27 27 H 1.07990 * 120.00109 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00093 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47485 * 4.99864 * 3 2 1 30 30 H 1.08999 * 109.46968 * 244.99478 * 3 2 1 31 31 H 1.08997 * 109.47441 * 305.00143 * 6 4 3 32 32 H 1.09000 * 109.47164 * 65.00375 * 6 4 3 33 33 H 1.09000 * 109.47046 * 60.00072 * 7 6 4 34 34 H 1.09001 * 109.47299 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46783 * 300.00020 * 7 6 4 36 36 H 0.96995 * 120.00213 * 335.00279 * 8 4 3 37 37 H 0.97009 * 119.99791 * 4.56178 * 13 11 9 38 38 H 1.09008 * 109.47462 * 64.70268 * 14 13 11 39 39 H 1.08995 * 109.47447 * 304.69904 * 14 13 11 40 40 H 0.97003 * 119.99559 * 179.97438 * 19 18 16 41 41 H 1.08998 * 117.49449 * 215.00109 * 24 15 14 42 42 H 1.08998 * 117.49956 * 0.02631 * 24 15 14 43 43 H 1.09006 * 117.49989 * 359.97438 * 25 15 14 44 44 H 1.08998 * 117.49998 * 144.97353 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 1 3.6827 0.4575 1.1404 6 6 3.8874 2.6018 1.1110 7 6 4.9419 2.5700 2.2192 8 7 2.2785 1.3225 2.4362 9 6 2.8473 0.8477 3.5621 10 8 3.9859 0.4287 3.5365 11 6 2.0757 0.8372 4.8419 12 8 0.9085 1.1690 4.8494 13 7 2.6763 0.4592 5.9877 14 6 1.8961 0.3527 7.2231 15 6 2.8301 0.0234 8.3893 16 6 3.5070 -1.3213 8.3203 17 1 4.5851 -1.3839 8.3236 18 6 2.7498 -2.4719 8.2587 19 7 3.3340 -3.6339 8.0631 20 14 0.8942 -2.3804 8.4529 21 1 0.2597 -2.2951 7.1129 22 1 0.4093 -3.5965 9.1537 23 1 0.5383 -1.1767 9.2465 24 6 3.6159 1.1786 9.0131 25 6 2.4452 0.5502 9.7732 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4026 -0.9313 31 1 4.3815 2.6540 0.1408 32 1 3.2495 3.4759 1.2414 33 1 5.5798 1.6959 2.0888 34 1 5.5489 3.4740 2.1692 35 1 4.4477 2.5178 3.1894 36 1 1.3682 1.6570 2.4565 37 1 3.6252 0.2576 5.9944 38 1 1.1541 -0.4388 7.1172 39 1 1.3923 1.2995 7.4174 40 1 2.8012 -4.4434 8.0202 41 1 4.6223 0.9659 9.3734 42 1 3.4670 2.1732 8.5929 43 1 1.5267 1.1319 9.8528 44 1 2.6811 -0.0759 10.6337 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342265392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:14 Heat of formation + Delta-G solvation = -56.887322 kcal Electronic energy + Delta-G solvation = -24191.966624 eV Core-core repulsion = 20723.606455 eV Total energy + Delta-G solvation = -3468.360169 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81193 -40.06428 -38.69255 -37.90338 -35.27739 -34.62566 -34.30858 -33.31412 -29.84961 -29.04279 -27.49377 -25.39852 -24.41859 -23.19846 -21.80499 -21.47272 -21.17264 -20.58846 -19.54603 -18.32722 -18.01649 -17.37319 -16.98948 -16.84945 -16.33833 -15.81583 -15.72164 -15.25913 -14.96149 -14.88661 -14.63280 -14.44468 -14.22138 -14.06208 -13.83591 -13.41507 -13.07410 -13.02945 -12.75559 -12.65835 -12.41824 -12.17907 -12.09907 -12.02542 -11.76432 -11.71014 -11.50950 -11.09282 -10.76364 -10.74499 -10.37365 -10.32677 -10.11705 -10.04604 -8.33386 -6.36808 0.38126 1.28485 1.34701 1.38040 1.40132 1.45925 2.17088 2.31318 2.65533 2.98186 3.34094 3.51861 3.69211 3.94033 3.94711 4.15118 4.22987 4.26670 4.35390 4.41977 4.46158 4.52494 4.62233 4.69933 4.78640 4.91697 4.92530 4.98886 5.01599 5.06735 5.10756 5.18108 5.20270 5.28349 5.38604 5.48698 5.52285 5.65475 5.74884 5.86543 6.01644 6.27065 6.42639 6.69615 6.78468 6.99107 7.30261 8.81578 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.004326 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.610658 B = 6470.729739 C = 7101.489581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C -0.091 4.091 4 C 0.142 3.858 5 H 0.076 0.924 6 C -0.127 4.127 7 C -0.149 4.149 8 N -0.680 5.680 9 C 0.512 3.488 10 O -0.532 6.532 11 C 0.494 3.506 12 O -0.554 6.554 13 N -0.673 5.673 14 C 0.154 3.846 15 C -0.048 4.048 16 C -0.480 4.480 17 H 0.040 0.960 18 C 0.030 3.970 19 N -0.940 5.940 20 Si 0.921 3.079 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.221 1.221 24 C -0.157 4.157 25 C -0.176 4.176 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.031 0.969 36 H 0.416 0.584 37 H 0.416 0.584 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.265 0.735 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 14.638 -15.706 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.186 4.186 3 C -0.128 4.128 4 C 0.039 3.961 5 H 0.094 0.906 6 C -0.165 4.165 7 C -0.206 4.206 8 N -0.333 5.333 9 C 0.292 3.708 10 O -0.409 6.409 11 C 0.275 3.725 12 O -0.434 6.434 13 N -0.323 5.323 14 C 0.031 3.969 15 C -0.049 4.049 16 C -0.517 4.517 17 H 0.058 0.942 18 C -0.168 4.168 19 N -0.579 5.579 20 Si 0.747 3.253 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.143 1.143 24 C -0.194 4.194 25 C -0.214 4.214 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.132 0.868 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.253 0.747 37 H 0.253 0.747 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.055 14.370 -15.727 21.686 hybrid contribution -0.564 -1.047 0.414 1.259 sum -4.619 13.323 -15.313 20.817 Atomic orbital electron populations 1.24008 0.95993 1.02533 1.00513 1.23024 0.96379 0.98777 1.00442 1.21064 0.98224 0.95794 0.97702 1.21340 0.93337 0.99725 0.81699 0.90604 1.21961 0.97251 0.96928 1.00347 1.21806 0.99058 1.01253 0.98480 1.45799 1.18607 1.61315 1.07601 1.19877 0.86383 0.79189 0.85377 1.90783 1.18150 1.46101 1.85873 1.20514 0.87301 0.78930 0.85794 1.90681 1.17002 1.48919 1.86807 1.45774 1.14529 1.64248 1.07732 1.21153 0.92937 0.99846 0.82936 1.19440 0.99982 0.94304 0.91147 1.20394 0.92890 0.88644 1.49797 0.94165 1.25644 1.02529 0.94865 0.93798 1.70036 1.37896 0.99321 1.50645 0.86190 0.81359 0.79206 0.78543 1.21374 1.22188 1.14341 1.22848 0.96143 0.96358 1.04092 1.23119 0.98955 1.03655 0.95653 0.88892 0.87169 0.88369 0.89072 0.86775 0.88235 0.90372 0.93635 0.92088 0.94993 0.74722 0.74688 0.94253 0.90228 0.92619 0.89858 0.87977 0.88299 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 14.32 67.77 0.97 -2.21 16 2 C -0.17 -2.83 9.25 25.64 0.24 -2.59 16 3 C -0.09 -1.13 5.20 29.85 0.16 -0.98 16 4 C 0.14 2.61 2.24 44.99 0.10 2.71 16 5 H 0.08 1.72 7.58 -2.39 -0.02 1.71 16 6 C -0.13 -1.97 5.61 30.59 0.17 -1.80 16 7 C -0.15 -3.29 8.52 71.98 0.61 -2.67 16 8 N -0.68 -16.16 4.74 -443.86 -2.10 -18.26 16 9 C 0.51 16.56 6.45 87.27 0.56 17.12 16 10 O -0.53 -19.53 13.64 -3.24 -0.04 -19.57 16 11 C 0.49 18.34 7.88 87.27 0.69 19.02 16 12 O -0.55 -21.61 16.47 -3.24 -0.05 -21.67 16 13 N -0.67 -26.85 5.46 -464.42 -2.54 -29.38 16 14 C 0.15 6.36 5.08 86.38 0.44 6.80 16 15 C -0.05 -2.05 0.85 -52.92 -0.04 -2.09 16 16 C -0.48 -25.95 9.19 25.60 0.24 -25.72 16 17 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 18 C 0.03 1.72 5.46 84.65 0.46 2.19 16 19 N -0.94 -57.99 13.96 21.45 0.30 -57.70 16 20 Si 0.92 44.13 24.69 68.60 1.69 45.82 16 21 H -0.29 -14.03 6.96 99.48 0.69 -13.33 16 22 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 23 H -0.22 -9.39 6.11 99.48 0.61 -8.79 16 24 C -0.16 -5.64 9.96 30.62 0.30 -5.33 16 25 C -0.18 -6.52 8.69 30.62 0.27 -6.26 16 26 H 0.09 1.57 8.06 -2.91 -0.02 1.55 16 27 H 0.11 1.47 7.84 -2.92 -0.02 1.45 16 28 H 0.10 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.09 0.89 7.79 -2.39 -0.02 0.87 16 30 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.04 1.15 7.85 -2.39 -0.02 1.13 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.03 0.86 5.65 -2.38 -0.01 0.84 16 36 H 0.42 8.92 8.08 -92.71 -0.75 8.17 16 37 H 0.42 17.13 7.83 -92.70 -0.73 16.41 16 38 H 0.04 1.80 4.27 -2.38 -0.01 1.79 16 39 H 0.08 2.92 8.06 -2.39 -0.02 2.90 16 40 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 42 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.10 3.16 8.14 -2.38 -0.02 3.14 16 44 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -67.58 360.40 1.83 -65.75 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -0.59 Total: 36.81 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 5.16 Total: -1.80 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -4.34 Total: -105.34 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -0.10 Total: -41.24 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.69 Total: 45.82 kcal Total: -67.58 1.83 -65.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342265392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.861 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds