Wall clock time and date at job start Tue Mar 31 2020 07:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99982 * 2 1 4 4 C 1.53001 * 109.47098 * 124.99788 * 3 2 1 5 5 H 1.08998 * 109.46858 * 304.99662 * 4 3 2 6 6 C 1.53002 * 109.46833 * 184.99967 * 4 3 2 7 7 C 1.52999 * 109.46967 * 174.99956 * 6 4 3 8 8 N 1.46501 * 109.47280 * 65.00283 * 4 3 2 9 9 C 1.34769 * 120.00011 * 205.00080 * 8 4 3 10 10 O 1.21358 * 119.99800 * 359.97438 * 9 8 4 11 11 C 1.49453 * 120.00473 * 179.97438 * 9 8 4 12 12 O 1.21351 * 119.99369 * 5.09242 * 11 9 8 13 13 N 1.34769 * 120.00243 * 185.08548 * 11 9 8 14 14 C 1.46497 * 120.00011 * 185.03773 * 13 11 9 15 15 C 1.53005 * 109.47129 * 184.78311 * 14 13 11 16 16 C 1.50703 * 115.54676 * 294.81585 * 15 14 13 17 17 H 1.07998 * 119.99578 * 95.20301 * 16 15 14 18 18 C 1.37876 * 120.00032 * 274.92215 * 16 15 14 19 19 N 1.31513 * 120.00087 * 355.42383 * 18 16 15 20 20 Si 1.86797 * 119.99764 * 175.41970 * 18 16 15 21 21 H 1.48506 * 109.47089 * 90.00605 * 20 18 16 22 22 H 1.48500 * 109.47109 * 210.00447 * 20 18 16 23 23 H 1.48505 * 109.47313 * 330.00182 * 20 18 16 24 24 C 1.52992 * 117.50017 * 80.49188 * 15 14 13 25 25 C 1.52998 * 117.49741 * 149.15238 * 15 14 13 26 26 H 1.08002 * 119.99607 * 179.97438 * 1 2 3 27 27 H 1.07992 * 119.99968 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99953 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46901 * 4.99707 * 3 2 1 30 30 H 1.09004 * 109.46917 * 244.99761 * 3 2 1 31 31 H 1.09003 * 109.47284 * 295.00133 * 6 4 3 32 32 H 1.08997 * 109.47178 * 54.99873 * 6 4 3 33 33 H 1.08993 * 109.46867 * 299.99820 * 7 6 4 34 34 H 1.08997 * 109.47239 * 59.99954 * 7 6 4 35 35 H 1.09001 * 109.47008 * 179.97438 * 7 6 4 36 36 H 0.97004 * 120.00150 * 24.99403 * 8 4 3 37 37 H 0.97000 * 120.00088 * 5.04363 * 13 11 9 38 38 H 1.09004 * 109.47290 * 64.78043 * 14 13 11 39 39 H 1.09002 * 109.47245 * 304.78204 * 14 13 11 40 40 H 0.97005 * 120.00163 * 184.99518 * 19 18 16 41 41 H 1.09001 * 117.49686 * 215.00072 * 24 15 14 42 42 H 1.09004 * 117.49963 * 0.02562 * 24 15 14 43 43 H 1.09001 * 117.50544 * 359.96959 * 25 15 14 44 44 H 1.09001 * 117.50141 * 144.97625 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 2.4882 1.1470 2.1060 6 6 3.7091 2.7047 1.2552 7 6 4.5856 2.7757 2.5073 8 7 4.0547 0.2970 1.0002 9 6 4.6912 -0.2169 2.0712 10 8 4.4200 0.1790 3.1859 11 6 5.7310 -1.2744 1.8863 12 8 6.0684 -1.6045 0.7684 13 7 6.2940 -1.8611 2.9610 14 6 7.3900 -2.8168 2.7836 15 6 7.7645 -3.4207 4.1387 16 6 8.3390 -2.4558 5.1437 17 1 7.6952 -1.9932 5.8771 18 6 9.6873 -2.1682 5.1306 19 7 10.4870 -2.8024 4.3012 20 14 10.3783 -0.8776 6.2909 21 1 10.7816 -1.5234 7.5659 22 1 11.5615 -0.2332 5.6664 23 1 9.3410 0.1498 6.5628 24 6 6.8909 -4.5584 4.6708 25 6 8.2994 -4.8541 4.1497 26 1 -0.5399 -0.9354 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6214 1.4026 -0.9314 31 1 4.3274 2.8536 0.3699 32 1 2.9467 3.4823 1.3008 33 1 3.9673 2.6268 3.3924 34 1 5.3480 1.9981 2.4617 35 1 5.0662 3.7526 2.5594 36 1 4.2717 -0.0193 0.1092 37 1 5.9735 -1.6507 3.8520 38 1 8.2549 -2.3039 2.3629 39 1 7.0739 -3.6108 2.1069 40 1 11.4446 -2.6533 4.3414 41 1 6.7315 -4.6090 5.7479 42 1 6.0495 -4.8770 4.0553 43 1 8.3842 -5.3672 3.1917 44 1 9.0670 -5.0992 4.8837 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342265393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:18 Heat of formation + Delta-G solvation = -41.497653 kcal Electronic energy + Delta-G solvation = -23898.001401 eV Core-core repulsion = 20430.308577 eV Total energy + Delta-G solvation = -3467.692823 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.46574 -38.56824 -36.87883 -36.71351 -34.12338 -33.39341 -32.27038 -31.97160 -28.98911 -27.05258 -25.47502 -24.27319 -23.31968 -21.20630 -20.83927 -19.97647 -19.94554 -19.51535 -17.97757 -16.83373 -16.18531 -15.92512 -15.46370 -15.37536 -14.78402 -14.57384 -14.37542 -13.91292 -13.85777 -13.65012 -13.20167 -13.03519 -12.70739 -12.64006 -11.94164 -11.84507 -11.73031 -11.62281 -11.49503 -11.19788 -11.10657 -10.99662 -10.94875 -10.84957 -10.52850 -10.25245 -9.62725 -9.61312 -9.21360 -9.09202 -9.07047 -8.53435 -8.38735 -8.18236 -6.08945 -4.18593 1.81291 2.02105 2.71339 3.26624 3.34550 3.38491 3.61795 4.04861 4.35819 4.43528 4.66635 4.79791 4.93270 5.01143 5.08180 5.18730 5.20558 5.34175 5.41890 5.46399 5.63641 5.70679 5.82990 5.94680 5.95788 6.08657 6.28222 6.33958 6.38123 6.39712 6.43890 6.47513 6.50675 6.66581 6.74911 7.00529 7.08159 7.26107 7.33352 7.49950 7.80927 7.89203 8.17651 8.31430 8.53341 8.83570 9.49130 10.98045 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.003833 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.287350 B = 7303.155202 C = 8225.644133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.153 4.153 3 C -0.102 4.102 4 C 0.147 3.853 5 H 0.093 0.907 6 C -0.134 4.134 7 C -0.149 4.149 8 N -0.701 5.701 9 C 0.508 3.492 10 O -0.513 6.513 11 C 0.493 3.507 12 O -0.542 6.542 13 N -0.666 5.666 14 C 0.159 3.841 15 C 0.022 3.978 16 C -0.500 4.500 17 H 0.062 0.938 18 C 0.074 3.926 19 N -0.876 5.876 20 Si 0.890 3.110 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.271 1.271 24 C -0.210 4.210 25 C -0.140 4.140 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.410 0.590 37 H 0.414 0.586 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.262 0.738 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.508 7.429 -8.113 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.171 4.171 3 C -0.139 4.139 4 C 0.043 3.957 5 H 0.111 0.889 6 C -0.173 4.173 7 C -0.206 4.206 8 N -0.355 5.355 9 C 0.290 3.710 10 O -0.388 6.388 11 C 0.273 3.727 12 O -0.422 6.422 13 N -0.316 5.316 14 C 0.037 3.963 15 C 0.021 3.979 16 C -0.538 4.538 17 H 0.080 0.920 18 C -0.130 4.130 19 N -0.512 5.512 20 Si 0.717 3.283 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.196 1.196 24 C -0.247 4.247 25 C -0.178 4.178 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.246 0.754 37 H 0.250 0.750 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.236 7.516 -8.172 18.852 hybrid contribution 0.545 0.552 0.582 0.969 sum -14.691 8.068 -7.591 18.400 Atomic orbital electron populations 1.23845 0.95877 1.01845 1.01476 1.22950 0.96078 0.98534 0.99539 1.21089 0.98043 0.96353 0.98437 1.21117 0.87976 0.87170 0.99455 0.88893 1.21987 0.99723 0.96007 0.99570 1.21826 1.00200 1.01177 0.97381 1.45814 1.39462 1.40147 1.10102 1.20414 0.82479 0.83074 0.85074 1.90766 1.63687 1.60260 1.24060 1.20003 0.83521 0.83367 0.85829 1.90709 1.63717 1.63755 1.23980 1.45889 1.34696 1.41765 1.09238 1.21204 0.87098 0.90031 0.97984 1.19027 0.98053 0.88213 0.92631 1.20381 0.93136 1.25266 1.15015 0.92016 1.24983 0.97112 0.95820 0.95134 1.69987 1.03685 1.41371 1.36119 0.86620 0.78771 0.82120 0.80748 1.20647 1.21173 1.19619 1.23032 0.93686 1.08292 0.99718 1.22473 0.94674 1.00253 1.00366 0.88491 0.88618 0.87131 0.89749 0.90134 0.91664 0.91066 0.91987 0.92307 0.93425 0.75389 0.75015 0.90843 0.93461 0.92863 0.90224 0.91671 0.91752 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 14.32 29.01 0.42 -1.07 16 2 C -0.15 -1.30 9.25 -36.02 -0.33 -1.63 16 3 C -0.10 -0.76 5.20 -27.88 -0.15 -0.90 16 4 C 0.15 1.47 2.24 -67.93 -0.15 1.32 16 5 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 6 C -0.13 -1.29 5.61 -26.73 -0.15 -1.44 16 7 C -0.15 -1.86 8.51 37.16 0.32 -1.54 16 8 N -0.70 -8.50 4.72 -54.23 -0.26 -8.76 16 9 C 0.51 8.06 6.46 -11.59 -0.07 7.98 16 10 O -0.51 -8.97 13.64 5.49 0.07 -8.89 16 11 C 0.49 9.15 7.88 -11.59 -0.09 9.06 16 12 O -0.54 -10.91 16.47 5.50 0.09 -10.82 16 13 N -0.67 -13.28 5.46 -60.73 -0.33 -13.61 16 14 C 0.16 3.54 5.53 -4.04 -0.02 3.51 16 15 C 0.02 0.50 1.47 -155.66 -0.23 0.27 16 16 C -0.50 -12.96 8.59 -34.44 -0.30 -13.25 16 17 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 18 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 19 N -0.88 -24.04 12.65 55.43 0.70 -23.34 16 20 Si 0.89 20.76 29.54 -169.99 -5.02 15.73 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 C -0.21 -4.38 9.96 -26.70 -0.27 -4.64 16 25 C -0.14 -3.16 9.14 -26.70 -0.24 -3.40 16 26 H 0.10 0.70 8.06 -52.49 -0.42 0.27 16 27 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 28 H 0.11 1.03 8.03 -52.49 -0.42 0.61 16 29 H 0.08 0.52 7.79 -51.93 -0.40 0.11 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 34 H 0.06 0.89 5.64 -51.93 -0.29 0.60 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.41 4.57 8.08 -40.82 -0.33 4.24 16 37 H 0.41 8.17 7.84 -40.82 -0.32 7.85 16 38 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.05 1.01 8.05 -51.93 -0.42 0.60 16 40 H 0.26 6.91 8.32 -40.82 -0.34 6.58 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -28.61 369.58 -7.72 -36.33 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.17 Total: 11.67 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.37 Total: -3.88 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.11 Total: -45.71 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.17 Total: -19.71 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.61 -7.72 -36.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342265393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.169 kcal (2) G-P(sol) polarization free energy of solvation -28.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds