Wall clock time and date at job start Tue Mar 31 2020 07:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99982 * 2 1 4 4 C 1.53001 * 109.47098 * 124.99788 * 3 2 1 5 5 H 1.08998 * 109.46858 * 304.99662 * 4 3 2 6 6 C 1.53002 * 109.46833 * 184.99967 * 4 3 2 7 7 C 1.52999 * 109.46967 * 174.99956 * 6 4 3 8 8 N 1.46501 * 109.47280 * 65.00283 * 4 3 2 9 9 C 1.34769 * 120.00011 * 205.00080 * 8 4 3 10 10 O 1.21358 * 119.99800 * 359.97438 * 9 8 4 11 11 C 1.49453 * 120.00473 * 179.97438 * 9 8 4 12 12 O 1.21351 * 119.99369 * 5.09242 * 11 9 8 13 13 N 1.34769 * 120.00243 * 185.08548 * 11 9 8 14 14 C 1.46497 * 120.00011 * 185.03773 * 13 11 9 15 15 C 1.53005 * 109.47129 * 184.78311 * 14 13 11 16 16 C 1.50703 * 115.54676 * 294.81585 * 15 14 13 17 17 H 1.07998 * 119.99578 * 95.20301 * 16 15 14 18 18 C 1.37876 * 120.00032 * 274.92215 * 16 15 14 19 19 N 1.31513 * 120.00087 * 355.42383 * 18 16 15 20 20 Si 1.86797 * 119.99764 * 175.41970 * 18 16 15 21 21 H 1.48506 * 109.47089 * 90.00605 * 20 18 16 22 22 H 1.48500 * 109.47109 * 210.00447 * 20 18 16 23 23 H 1.48505 * 109.47313 * 330.00182 * 20 18 16 24 24 C 1.52992 * 117.50017 * 80.49188 * 15 14 13 25 25 C 1.52998 * 117.49741 * 149.15238 * 15 14 13 26 26 H 1.08002 * 119.99607 * 179.97438 * 1 2 3 27 27 H 1.07992 * 119.99968 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99953 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46901 * 4.99707 * 3 2 1 30 30 H 1.09004 * 109.46917 * 244.99761 * 3 2 1 31 31 H 1.09003 * 109.47284 * 295.00133 * 6 4 3 32 32 H 1.08997 * 109.47178 * 54.99873 * 6 4 3 33 33 H 1.08993 * 109.46867 * 299.99820 * 7 6 4 34 34 H 1.08997 * 109.47239 * 59.99954 * 7 6 4 35 35 H 1.09001 * 109.47008 * 179.97438 * 7 6 4 36 36 H 0.97004 * 120.00150 * 24.99403 * 8 4 3 37 37 H 0.97000 * 120.00088 * 5.04363 * 13 11 9 38 38 H 1.09004 * 109.47290 * 64.78043 * 14 13 11 39 39 H 1.09002 * 109.47245 * 304.78204 * 14 13 11 40 40 H 0.97005 * 120.00163 * 184.99518 * 19 18 16 41 41 H 1.09001 * 117.49686 * 215.00072 * 24 15 14 42 42 H 1.09004 * 117.49963 * 0.02562 * 24 15 14 43 43 H 1.09001 * 117.50544 * 359.96959 * 25 15 14 44 44 H 1.09001 * 117.50141 * 144.97625 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 2.4882 1.1470 2.1060 6 6 3.7091 2.7047 1.2552 7 6 4.5856 2.7757 2.5073 8 7 4.0547 0.2970 1.0002 9 6 4.6912 -0.2169 2.0712 10 8 4.4200 0.1790 3.1859 11 6 5.7310 -1.2744 1.8863 12 8 6.0684 -1.6045 0.7684 13 7 6.2940 -1.8611 2.9610 14 6 7.3900 -2.8168 2.7836 15 6 7.7645 -3.4207 4.1387 16 6 8.3390 -2.4558 5.1437 17 1 7.6952 -1.9932 5.8771 18 6 9.6873 -2.1682 5.1306 19 7 10.4870 -2.8024 4.3012 20 14 10.3783 -0.8776 6.2909 21 1 10.7816 -1.5234 7.5659 22 1 11.5615 -0.2332 5.6664 23 1 9.3410 0.1498 6.5628 24 6 6.8909 -4.5584 4.6708 25 6 8.2994 -4.8541 4.1497 26 1 -0.5399 -0.9354 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6214 1.4026 -0.9314 31 1 4.3274 2.8536 0.3699 32 1 2.9467 3.4823 1.3008 33 1 3.9673 2.6268 3.3924 34 1 5.3480 1.9981 2.4617 35 1 5.0662 3.7526 2.5594 36 1 4.2717 -0.0193 0.1092 37 1 5.9735 -1.6507 3.8520 38 1 8.2549 -2.3039 2.3629 39 1 7.0739 -3.6108 2.1069 40 1 11.4446 -2.6533 4.3414 41 1 6.7315 -4.6090 5.7479 42 1 6.0495 -4.8770 4.0553 43 1 8.3842 -5.3672 3.1917 44 1 9.0670 -5.0992 4.8837 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342265393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:17 Heat of formation + Delta-G solvation = -59.314132 kcal Electronic energy + Delta-G solvation = -23898.773981 eV Core-core repulsion = 20430.308577 eV Total energy + Delta-G solvation = -3468.465404 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76686 -39.96278 -38.48044 -37.87800 -35.25237 -34.62585 -33.97072 -33.31290 -29.81444 -28.69423 -27.41314 -25.32794 -24.46939 -22.94014 -21.79873 -21.43142 -21.21004 -20.57217 -19.45453 -18.08408 -17.95101 -17.22300 -16.79161 -16.60266 -16.26321 -16.02097 -15.70041 -15.48088 -14.94327 -14.65116 -14.45986 -14.35905 -14.09849 -13.66564 -13.50664 -13.41231 -12.96695 -12.83706 -12.78157 -12.66935 -12.39858 -12.36395 -12.30127 -12.02545 -11.83426 -11.70653 -11.42462 -10.98753 -10.68735 -10.46220 -10.31237 -10.12116 -10.05312 -9.95798 -8.11426 -6.25096 0.42567 1.38982 1.39946 1.43566 1.45977 1.51873 2.21480 2.41029 2.75133 3.16151 3.44185 3.60516 3.73156 3.96048 4.11231 4.18955 4.27280 4.35270 4.50349 4.51747 4.61335 4.61414 4.67794 4.81433 4.90710 4.91274 5.00958 5.02502 5.04623 5.10728 5.18514 5.27381 5.34254 5.39368 5.46598 5.52009 5.67376 5.76317 5.78257 5.88075 6.07000 6.34998 6.49368 6.80620 6.84927 7.03821 7.44613 8.95125 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.003833 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.287350 B = 7303.155202 C = 8225.644133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.171 4.171 3 C -0.091 4.091 4 C 0.146 3.854 5 H 0.079 0.921 6 C -0.129 4.129 7 C -0.149 4.149 8 N -0.682 5.682 9 C 0.514 3.486 10 O -0.532 6.532 11 C 0.493 3.507 12 O -0.559 6.559 13 N -0.670 5.670 14 C 0.175 3.825 15 C -0.002 4.002 16 C -0.508 4.508 17 H 0.057 0.943 18 C 0.029 3.971 19 N -0.903 5.903 20 Si 0.945 3.055 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.271 1.271 24 C -0.181 4.181 25 C -0.145 4.145 26 H 0.097 0.903 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.027 0.973 35 H 0.056 0.944 36 H 0.416 0.584 37 H 0.414 0.586 38 H 0.039 0.961 39 H 0.054 0.946 40 H 0.260 0.740 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.515 8.708 -8.788 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.189 4.189 3 C -0.129 4.129 4 C 0.042 3.958 5 H 0.097 0.903 6 C -0.167 4.167 7 C -0.206 4.206 8 N -0.336 5.336 9 C 0.294 3.706 10 O -0.409 6.409 11 C 0.273 3.727 12 O -0.439 6.439 13 N -0.320 5.320 14 C 0.052 3.948 15 C -0.003 4.003 16 C -0.546 4.546 17 H 0.075 0.925 18 C -0.172 4.172 19 N -0.540 5.540 20 Si 0.771 3.229 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.195 1.195 24 C -0.218 4.218 25 C -0.184 4.184 26 H 0.116 0.884 27 H 0.130 0.870 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.254 0.746 37 H 0.251 0.749 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.274 8.808 -8.870 21.323 hybrid contribution 1.098 0.156 0.755 1.341 sum -16.176 8.964 -8.116 20.196 Atomic orbital electron populations 1.24027 0.95708 1.02730 1.00039 1.22981 0.96520 0.98545 1.00894 1.21059 0.97677 0.96588 0.97535 1.21324 0.87612 0.86532 1.00298 0.90253 1.21983 1.00078 0.96366 0.98282 1.21804 0.99763 1.00525 0.98539 1.45833 1.38711 1.39679 1.09333 1.19872 0.82292 0.82689 0.85716 1.90765 1.64365 1.60885 1.24878 1.20518 0.83644 0.83394 0.85102 1.90690 1.64374 1.64308 1.24483 1.45801 1.34460 1.41974 1.09753 1.20813 0.86652 0.90129 0.97239 1.19062 0.99886 0.88402 0.92914 1.20644 0.93243 1.25484 1.15201 0.92481 1.25626 0.97624 0.97391 0.96594 1.70085 1.03687 1.42752 1.37505 0.85753 0.77895 0.80015 0.79214 1.20057 1.21352 1.19515 1.23019 0.93305 1.05309 1.00206 1.22393 0.95445 0.99991 1.00525 0.88420 0.87020 0.88574 0.87435 0.88858 0.90734 0.88166 0.93193 0.95415 0.92486 0.74640 0.74931 0.94271 0.92773 0.93063 0.89922 0.89251 0.90663 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 14.32 67.78 0.97 -1.47 16 2 C -0.17 -2.55 9.25 25.65 0.24 -2.31 16 3 C -0.09 -1.08 5.20 29.85 0.16 -0.93 16 4 C 0.15 2.61 2.24 44.99 0.10 2.71 16 5 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16 6 C -0.13 -2.15 5.61 30.59 0.17 -1.98 16 7 C -0.15 -3.58 8.51 71.98 0.61 -2.97 16 8 N -0.68 -15.79 4.72 -443.86 -2.09 -17.88 16 9 C 0.51 16.18 6.46 87.27 0.56 16.74 16 10 O -0.53 -18.64 13.64 -3.27 -0.04 -18.68 16 11 C 0.49 18.35 7.88 87.27 0.69 19.03 16 12 O -0.56 -22.46 16.47 -3.25 -0.05 -22.51 16 13 N -0.67 -26.95 5.46 -464.41 -2.54 -29.49 16 14 C 0.18 7.87 5.53 86.38 0.48 8.35 16 15 C 0.00 -0.09 1.47 -52.93 -0.08 -0.17 16 16 C -0.51 -26.55 8.59 25.60 0.22 -26.33 16 17 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 18 C 0.03 1.54 5.43 84.65 0.46 2.00 16 19 N -0.90 -50.53 12.65 21.45 0.27 -50.26 16 20 Si 0.94 43.04 29.54 68.60 2.03 45.07 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C -0.18 -7.33 9.96 30.61 0.30 -7.03 16 25 C -0.15 -6.58 9.14 30.62 0.28 -6.30 16 26 H 0.10 1.23 8.06 -2.91 -0.02 1.20 16 27 H 0.11 1.08 7.84 -2.91 -0.02 1.06 16 28 H 0.10 1.69 8.03 -2.91 -0.02 1.66 16 29 H 0.11 0.85 7.79 -2.39 -0.02 0.83 16 30 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.29 7.85 -2.39 -0.02 1.28 16 34 H 0.03 0.82 5.64 -2.39 -0.01 0.81 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.42 8.72 8.08 -92.71 -0.75 7.97 16 37 H 0.41 16.53 7.84 -92.71 -0.73 15.80 16 38 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.05 2.32 8.05 -2.39 -0.02 2.31 16 40 H 0.26 14.02 8.32 -92.70 -0.77 13.25 16 41 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 43 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -61.99 369.58 2.25 -59.74 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: -0.48 Total: 34.67 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 5.16 Total: -0.65 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -4.36 Total: -97.63 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -0.10 Total: -41.20 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -61.99 2.25 -59.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342265393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.427 kcal (2) G-P(sol) polarization free energy of solvation -61.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds