Wall clock time and date at job start Tue Mar 31 2020 07:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50709 * 119.99740 * 2 1 4 4 C 1.31001 * 120.00404 * 180.02562 * 2 1 3 5 5 C 1.50704 * 119.99439 * 354.57172 * 4 2 1 6 6 C 1.52999 * 109.46958 * 119.05121 * 5 4 2 7 7 N 1.46494 * 109.47067 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99996 * 179.97438 * 7 6 5 9 9 O 1.21347 * 119.99835 * 0.02562 * 8 7 6 10 10 C 1.49452 * 119.99929 * 179.97438 * 8 7 6 11 11 O 1.21352 * 119.99930 * 354.91411 * 10 8 7 12 12 N 1.34776 * 120.00021 * 175.19129 * 10 8 7 13 13 C 1.46496 * 120.00314 * 184.67385 * 12 10 8 14 14 C 1.52999 * 109.47282 * 184.82413 * 13 12 10 15 15 C 1.50700 * 115.55047 * 303.63118 * 14 13 12 16 16 H 1.08000 * 120.00195 * 144.30930 * 15 14 13 17 17 C 1.37879 * 120.00119 * 324.31483 * 15 14 13 18 18 N 1.31514 * 119.99921 * 3.31518 * 17 15 14 19 19 Si 1.86796 * 120.00100 * 183.31821 * 17 15 14 20 20 H 1.48498 * 109.47466 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47415 * 119.99728 * 19 17 15 22 22 H 1.48502 * 109.47349 * 239.99524 * 19 17 15 23 23 C 1.53003 * 117.49788 * 157.96663 * 14 13 12 24 24 C 1.52997 * 117.50070 * 89.30674 * 14 13 12 25 25 H 1.09003 * 109.46752 * 244.82018 * 1 2 3 26 26 H 1.09001 * 109.46937 * 4.81773 * 1 2 3 27 27 H 1.08996 * 109.47173 * 124.81892 * 1 2 3 28 28 H 1.09001 * 109.47020 * 269.99654 * 3 2 1 29 29 H 1.08992 * 109.46972 * 30.00351 * 3 2 1 30 30 H 1.08999 * 109.46803 * 149.99838 * 3 2 1 31 31 H 1.07994 * 120.00403 * 174.57521 * 4 2 1 32 32 H 1.08996 * 109.47310 * 359.04608 * 5 4 2 33 33 H 1.09000 * 109.47101 * 239.04931 * 5 4 2 34 34 H 1.09002 * 109.46863 * 59.99713 * 6 5 4 35 35 H 1.09000 * 109.47060 * 299.99836 * 6 5 4 36 36 H 0.97005 * 120.00211 * 359.97438 * 7 6 5 37 37 H 0.97001 * 119.99843 * 4.67430 * 12 10 8 38 38 H 1.09000 * 109.47243 * 304.82603 * 13 12 10 39 39 H 1.09002 * 109.47095 * 64.82023 * 13 12 10 40 40 H 0.97002 * 120.00393 * 185.00735 * 18 17 15 41 41 H 1.08997 * 117.50207 * 0.02562 * 23 14 13 42 42 H 1.09002 * 117.49754 * 145.01840 * 23 14 13 43 43 H 1.09007 * 117.49690 * 214.97983 * 24 14 13 44 44 H 1.09002 * 117.49553 * 359.97246 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1345 -0.0005 5 6 1.4136 -2.4367 0.1224 6 6 1.6623 -3.2875 -1.1247 7 7 0.9352 -4.5536 -1.0050 8 6 1.0063 -5.4676 -1.9930 9 8 1.6731 -5.2418 -2.9815 10 6 0.2650 -6.7595 -1.8706 11 8 -0.3254 -7.0254 -0.8443 12 7 0.2569 -7.6317 -2.8980 13 6 -0.5523 -8.8503 -2.8181 14 6 -0.2919 -9.7173 -4.0515 15 6 -0.5370 -9.0487 -5.3796 16 1 0.0959 -9.2773 -6.2243 17 6 -1.5693 -8.1449 -5.5163 18 7 -2.2990 -7.8172 -4.4724 19 14 -1.9315 -7.3861 -7.1843 20 1 -0.9735 -7.9157 -8.1877 21 1 -3.3173 -7.7284 -7.5935 22 1 -1.7914 -5.9102 -7.0977 23 6 -0.6056 -11.2110 -3.9440 24 6 0.8487 -10.7340 -3.9723 25 1 -0.3633 -0.4372 0.9301 26 1 -0.3633 1.0241 -0.0863 27 1 -0.3633 -0.5868 -0.8436 28 1 2.4422 1.6198 -1.0277 29 1 1.6714 2.0647 0.5139 30 1 3.2129 1.1749 0.5139 31 1 3.2384 -1.1365 -0.0889 32 1 0.3467 -2.2350 0.2179 33 1 1.7620 -2.9742 1.0043 34 1 2.7292 -3.4891 -1.2201 35 1 1.3138 -2.7500 -2.0066 36 1 0.4025 -4.7342 -0.2147 37 1 0.7868 -7.4526 -3.6905 38 1 -0.2840 -9.4063 -1.9198 39 1 -1.6084 -8.5832 -2.7781 40 1 -3.0696 -7.2383 -4.5816 41 1 -0.9979 -11.5759 -2.9948 42 1 -0.9889 -11.7100 -4.8341 43 1 1.4215 -10.9195 -4.8809 44 1 1.4138 -10.7849 -3.0416 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342934310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:49 Heat of formation + Delta-G solvation = -45.248342 kcal Electronic energy + Delta-G solvation = -23263.440417 eV Core-core repulsion = 19795.584951 eV Total energy + Delta-G solvation = -3467.855465 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98816 -38.11269 -37.32948 -36.65550 -34.94679 -33.05062 -32.20433 -31.12528 -28.09708 -27.14263 -26.16655 -25.48199 -23.32304 -21.89934 -21.24617 -19.72316 -19.35274 -18.16249 -17.81268 -16.38014 -16.16408 -15.94512 -15.22188 -15.08555 -14.75437 -14.52853 -14.23996 -14.14065 -14.01612 -13.61207 -13.22760 -12.88584 -12.71450 -12.57363 -12.18984 -12.14394 -11.92751 -11.81411 -11.46792 -11.41997 -11.12544 -11.08288 -10.97326 -10.74402 -10.51656 -10.28296 -9.72880 -9.09783 -9.04919 -8.98071 -8.90435 -8.83277 -8.32707 -8.01468 -6.04318 -4.22623 1.87062 2.06734 2.95269 3.23167 3.32985 3.35844 3.90834 4.26874 4.31956 4.56155 4.68150 4.84302 4.92219 4.96241 5.09212 5.25070 5.26377 5.31085 5.46631 5.48675 5.50836 5.51087 5.63895 5.74121 5.84788 5.92165 5.98026 6.26801 6.38520 6.44852 6.49434 6.59005 6.64930 6.65520 6.84515 7.02215 7.22674 7.30579 7.48467 7.54590 7.92406 8.10898 8.27151 8.44641 8.78764 8.88671 9.41770 10.85984 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018795 B = 0.003216 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.438876 B = 8704.679414 C = 9544.858725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.163 4.163 5 C -0.106 4.106 6 C 0.124 3.876 7 N -0.711 5.711 8 C 0.508 3.492 9 O -0.523 6.523 10 C 0.494 3.506 11 O -0.551 6.551 12 N -0.644 5.644 13 C 0.157 3.843 14 C 0.032 3.968 15 C -0.493 4.493 16 H 0.063 0.937 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.195 4.195 24 C -0.211 4.211 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.411 0.589 37 H 0.412 0.588 38 H 0.029 0.971 39 H 0.124 0.876 40 H 0.262 0.738 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.043 13.085 9.511 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.129 4.129 3 C -0.174 4.174 4 C -0.182 4.182 5 C -0.143 4.143 6 C 0.000 4.000 7 N -0.365 5.365 8 C 0.290 3.710 9 O -0.398 6.398 10 C 0.274 3.726 11 O -0.432 6.432 12 N -0.291 5.291 13 C 0.035 3.965 14 C 0.031 3.969 15 C -0.530 4.530 16 H 0.082 0.918 17 C -0.131 4.131 18 N -0.511 5.511 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.234 4.234 24 C -0.248 4.248 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.247 0.753 37 H 0.248 0.752 38 H 0.048 0.952 39 H 0.141 0.859 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.968 13.217 9.525 17.350 hybrid contribution -0.223 0.333 -0.933 1.015 sum 5.746 13.549 8.593 17.042 Atomic orbital electron populations 1.20893 0.92301 1.02365 1.02309 1.21673 0.95920 0.95068 1.00192 1.20852 0.99616 0.94860 1.02095 1.22429 0.99569 0.93018 1.03192 1.20948 1.01293 0.94293 0.97795 1.21322 0.97058 0.83329 0.98271 1.45757 1.51101 1.17367 1.22293 1.20635 0.81800 0.85632 0.82977 1.90733 1.40447 1.78746 1.29826 1.19733 0.82871 0.84921 0.85120 1.90668 1.46094 1.77225 1.29213 1.45600 1.44684 1.20918 1.17906 1.21390 0.98680 0.82390 0.94081 1.19230 0.95810 0.86799 0.95036 1.20596 1.15191 1.23066 0.94184 0.91831 1.25004 0.96040 0.95213 0.96835 1.69799 1.17300 1.35878 1.28140 0.86451 0.78240 0.79071 0.83826 1.19633 1.20865 1.20857 1.22945 0.97731 1.02294 1.00417 1.22962 0.91337 1.10141 1.00373 0.91395 0.92136 0.91230 0.91488 0.91865 0.91909 0.87011 0.90262 0.90199 0.91195 0.91201 0.75328 0.75226 0.95232 0.85911 0.92698 0.91359 0.90077 0.90458 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 8.53 36.01 0.31 -0.64 16 2 C -0.13 -1.06 6.05 -101.06 -0.61 -1.67 16 3 C -0.12 -0.79 9.96 36.01 0.36 -0.43 16 4 C -0.16 -1.40 9.10 -36.02 -0.33 -1.73 16 5 C -0.11 -0.95 5.57 -27.88 -0.16 -1.11 16 6 C 0.12 1.47 5.66 -4.05 -0.02 1.45 16 7 N -0.71 -10.29 5.55 -60.73 -0.34 -10.63 16 8 C 0.51 9.55 7.89 -11.58 -0.09 9.45 16 9 O -0.52 -10.92 16.49 5.50 0.09 -10.82 16 10 C 0.49 10.49 7.88 -11.58 -0.09 10.39 16 11 O -0.55 -12.32 16.47 5.49 0.09 -12.23 16 12 N -0.64 -14.47 5.32 -60.73 -0.32 -14.80 16 13 C 0.16 3.70 4.63 -4.04 -0.02 3.68 16 14 C 0.03 0.76 2.03 -155.66 -0.32 0.44 16 15 C -0.49 -12.66 8.39 -34.44 -0.29 -12.95 16 16 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 17 C 0.07 1.88 5.37 -17.82 -0.10 1.78 16 18 N -0.87 -23.15 10.23 55.43 0.57 -22.58 16 19 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.20 -4.21 9.96 -26.69 -0.27 -4.48 16 24 C -0.21 -4.41 9.93 -26.69 -0.27 -4.68 16 25 H 0.07 0.49 7.74 -51.93 -0.40 0.09 16 26 H 0.06 0.41 7.98 -51.93 -0.41 0.00 16 27 H 0.07 0.59 7.77 -51.93 -0.40 0.18 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.06 -51.93 -0.42 -0.03 16 31 H 0.11 0.89 8.05 -52.49 -0.42 0.46 16 32 H 0.08 0.69 5.81 -51.93 -0.30 0.39 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.41 5.38 7.96 -40.82 -0.32 5.06 16 37 H 0.41 9.44 7.49 -40.82 -0.31 9.13 16 38 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 39 H 0.12 3.24 5.78 -51.93 -0.30 2.94 16 40 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 43 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -28.58 369.93 -8.30 -36.89 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -7.06 Total: 13.56 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.88 Total: -0.48 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.09 Total: -48.01 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.18 Total: -23.05 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.58 -8.30 -36.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342934310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.361 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds