Wall clock time and date at job start Tue Mar 31 2020 07:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50709 * 119.99740 * 2 1 4 4 C 1.31001 * 120.00404 * 180.02562 * 2 1 3 5 5 C 1.50704 * 119.99439 * 354.57172 * 4 2 1 6 6 C 1.52999 * 109.46958 * 119.05121 * 5 4 2 7 7 N 1.46494 * 109.47067 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99996 * 179.97438 * 7 6 5 9 9 O 1.21347 * 119.99835 * 0.02562 * 8 7 6 10 10 C 1.49452 * 119.99929 * 179.97438 * 8 7 6 11 11 O 1.21352 * 119.99930 * 354.91411 * 10 8 7 12 12 N 1.34776 * 120.00021 * 175.19129 * 10 8 7 13 13 C 1.46496 * 120.00314 * 184.67385 * 12 10 8 14 14 C 1.52999 * 109.47282 * 184.82413 * 13 12 10 15 15 C 1.50700 * 115.55047 * 303.63118 * 14 13 12 16 16 H 1.08000 * 120.00195 * 144.30930 * 15 14 13 17 17 C 1.37879 * 120.00119 * 324.31483 * 15 14 13 18 18 N 1.31514 * 119.99921 * 3.31518 * 17 15 14 19 19 Si 1.86796 * 120.00100 * 183.31821 * 17 15 14 20 20 H 1.48498 * 109.47466 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47415 * 119.99728 * 19 17 15 22 22 H 1.48502 * 109.47349 * 239.99524 * 19 17 15 23 23 C 1.53003 * 117.49788 * 157.96663 * 14 13 12 24 24 C 1.52997 * 117.50070 * 89.30674 * 14 13 12 25 25 H 1.09003 * 109.46752 * 244.82018 * 1 2 3 26 26 H 1.09001 * 109.46937 * 4.81773 * 1 2 3 27 27 H 1.08996 * 109.47173 * 124.81892 * 1 2 3 28 28 H 1.09001 * 109.47020 * 269.99654 * 3 2 1 29 29 H 1.08992 * 109.46972 * 30.00351 * 3 2 1 30 30 H 1.08999 * 109.46803 * 149.99838 * 3 2 1 31 31 H 1.07994 * 120.00403 * 174.57521 * 4 2 1 32 32 H 1.08996 * 109.47310 * 359.04608 * 5 4 2 33 33 H 1.09000 * 109.47101 * 239.04931 * 5 4 2 34 34 H 1.09002 * 109.46863 * 59.99713 * 6 5 4 35 35 H 1.09000 * 109.47060 * 299.99836 * 6 5 4 36 36 H 0.97005 * 120.00211 * 359.97438 * 7 6 5 37 37 H 0.97001 * 119.99843 * 4.67430 * 12 10 8 38 38 H 1.09000 * 109.47243 * 304.82603 * 13 12 10 39 39 H 1.09002 * 109.47095 * 64.82023 * 13 12 10 40 40 H 0.97002 * 120.00393 * 185.00735 * 18 17 15 41 41 H 1.08997 * 117.50207 * 0.02562 * 23 14 13 42 42 H 1.09002 * 117.49754 * 145.01840 * 23 14 13 43 43 H 1.09007 * 117.49690 * 214.97983 * 24 14 13 44 44 H 1.09002 * 117.49553 * 359.97246 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1345 -0.0005 5 6 1.4136 -2.4367 0.1224 6 6 1.6623 -3.2875 -1.1247 7 7 0.9352 -4.5536 -1.0050 8 6 1.0063 -5.4676 -1.9930 9 8 1.6731 -5.2418 -2.9815 10 6 0.2650 -6.7595 -1.8706 11 8 -0.3254 -7.0254 -0.8443 12 7 0.2569 -7.6317 -2.8980 13 6 -0.5523 -8.8503 -2.8181 14 6 -0.2919 -9.7173 -4.0515 15 6 -0.5370 -9.0487 -5.3796 16 1 0.0959 -9.2773 -6.2243 17 6 -1.5693 -8.1449 -5.5163 18 7 -2.2990 -7.8172 -4.4724 19 14 -1.9315 -7.3861 -7.1843 20 1 -0.9735 -7.9157 -8.1877 21 1 -3.3173 -7.7284 -7.5935 22 1 -1.7914 -5.9102 -7.0977 23 6 -0.6056 -11.2110 -3.9440 24 6 0.8487 -10.7340 -3.9723 25 1 -0.3633 -0.4372 0.9301 26 1 -0.3633 1.0241 -0.0863 27 1 -0.3633 -0.5868 -0.8436 28 1 2.4422 1.6198 -1.0277 29 1 1.6714 2.0647 0.5139 30 1 3.2129 1.1749 0.5139 31 1 3.2384 -1.1365 -0.0889 32 1 0.3467 -2.2350 0.2179 33 1 1.7620 -2.9742 1.0043 34 1 2.7292 -3.4891 -1.2201 35 1 1.3138 -2.7500 -2.0066 36 1 0.4025 -4.7342 -0.2147 37 1 0.7868 -7.4526 -3.6905 38 1 -0.2840 -9.4063 -1.9198 39 1 -1.6084 -8.5832 -2.7781 40 1 -3.0696 -7.2383 -4.5816 41 1 -0.9979 -11.5759 -2.9948 42 1 -0.9889 -11.7100 -4.8341 43 1 1.4215 -10.9195 -4.8809 44 1 1.4138 -10.7849 -3.0416 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342934310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:49 Heat of formation + Delta-G solvation = -62.594842 kcal Electronic energy + Delta-G solvation = -23264.192617 eV Core-core repulsion = 19795.584951 eV Total energy + Delta-G solvation = -3468.607666 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.54071 -39.66883 -38.43494 -38.16102 -36.12866 -34.74858 -34.14425 -32.05864 -28.73733 -28.56122 -27.63775 -27.10937 -24.59118 -23.05254 -22.88717 -21.26750 -21.15036 -19.56990 -18.74222 -18.09457 -17.73987 -17.13207 -16.73496 -16.48378 -16.25921 -16.08139 -15.54735 -15.13755 -14.92491 -14.90565 -14.68100 -14.30581 -14.23877 -13.62593 -13.34041 -13.26768 -13.02607 -12.96170 -12.78524 -12.68711 -12.60313 -12.55629 -12.29694 -12.17892 -12.05069 -11.71445 -11.53617 -10.92859 -10.74105 -10.57250 -10.31286 -10.17252 -9.82919 -9.59323 -7.98811 -6.22152 0.47810 1.18664 1.39908 1.45697 1.53816 1.55154 2.29158 2.40686 2.80765 3.08103 3.57457 3.70713 3.86441 4.05007 4.07915 4.15600 4.23819 4.43790 4.51096 4.55476 4.70376 4.72306 4.74443 4.76704 4.83553 4.93530 4.96616 5.01954 5.04964 5.09210 5.13988 5.19927 5.26368 5.27776 5.49384 5.58493 5.61822 5.78139 5.96158 6.00616 6.08179 6.34806 6.57023 6.79812 6.88656 7.15480 7.43159 8.88732 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018795 B = 0.003216 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.438876 B = 8704.679414 C = 9544.858725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.130 4.130 3 C -0.119 4.119 4 C -0.176 4.176 5 C -0.096 4.096 6 C 0.123 3.877 7 N -0.690 5.690 8 C 0.510 3.490 9 O -0.548 6.548 10 C 0.491 3.509 11 O -0.565 6.565 12 N -0.649 5.649 13 C 0.168 3.832 14 C 0.001 3.999 15 C -0.503 4.503 16 H 0.056 0.944 17 C 0.035 3.965 18 N -0.893 5.893 19 Si 0.948 3.052 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.288 1.288 23 C -0.190 4.190 24 C -0.190 4.190 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.419 0.581 37 H 0.408 0.592 38 H 0.034 0.966 39 H 0.095 0.905 40 H 0.259 0.741 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.699 13.863 10.115 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.130 4.130 3 C -0.175 4.175 4 C -0.194 4.194 5 C -0.133 4.133 6 C 0.000 4.000 7 N -0.343 5.343 8 C 0.291 3.709 9 O -0.425 6.425 10 C 0.272 3.728 11 O -0.446 6.446 12 N -0.296 5.296 13 C 0.045 3.955 14 C 0.000 4.000 15 C -0.540 4.540 16 H 0.075 0.925 17 C -0.167 4.167 18 N -0.531 5.531 19 Si 0.775 3.225 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.215 1.215 23 C -0.228 4.228 24 C -0.227 4.227 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.257 0.743 37 H 0.244 0.756 38 H 0.052 0.948 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.624 14.007 10.162 18.530 hybrid contribution -0.419 0.117 -1.064 1.150 sum 6.204 14.125 9.098 17.910 Atomic orbital electron populations 1.20931 0.92149 1.02894 1.02201 1.21923 0.96283 0.95669 0.99160 1.20893 0.99903 0.94306 1.02441 1.22465 0.99938 0.92775 1.04236 1.20883 1.01752 0.94112 0.96559 1.21518 0.96711 0.82124 0.99607 1.45751 1.50148 1.17213 1.21182 1.20199 0.81666 0.85390 0.83634 1.90724 1.41738 1.79096 1.30989 1.20187 0.82575 0.85574 0.84509 1.90648 1.46688 1.77714 1.29578 1.45588 1.44711 1.21119 1.18155 1.21107 0.97214 0.82879 0.94310 1.19286 0.98714 0.87764 0.94238 1.20768 1.15026 1.23321 0.94902 0.92546 1.25559 0.96140 0.95753 0.99200 1.69947 1.17514 1.36395 1.29210 0.85650 0.78039 0.77824 0.80997 1.19286 1.20621 1.21479 1.22964 0.98378 1.00410 1.01077 1.22963 0.90950 1.07403 1.01392 0.90826 0.91228 0.92129 0.91294 0.90971 0.91307 0.86412 0.89878 0.89033 0.90947 0.92073 0.74336 0.75616 0.94826 0.88761 0.93108 0.90010 0.90227 0.89938 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.53 71.24 0.61 -1.13 16 2 C -0.13 -1.92 6.05 -16.49 -0.10 -2.02 16 3 C -0.12 -1.37 9.96 71.24 0.71 -0.66 16 4 C -0.18 -2.71 9.10 25.65 0.23 -2.48 16 5 C -0.10 -1.55 5.57 29.85 0.17 -1.38 16 6 C 0.12 2.77 5.66 86.38 0.49 3.26 16 7 N -0.69 -19.26 5.55 -464.42 -2.58 -21.84 16 8 C 0.51 19.00 7.89 87.27 0.69 19.69 16 9 O -0.55 -22.84 16.49 -3.24 -0.05 -22.89 16 10 C 0.49 20.85 7.88 87.27 0.69 21.53 16 11 O -0.56 -25.12 16.47 -3.25 -0.05 -25.18 16 12 N -0.65 -29.36 5.32 -464.41 -2.47 -31.83 16 13 C 0.17 7.94 4.63 86.38 0.40 8.34 16 14 C 0.00 0.03 2.03 -52.93 -0.11 -0.08 16 15 C -0.50 -25.78 8.39 25.60 0.21 -25.57 16 16 H 0.06 2.91 7.82 -2.91 -0.02 2.88 16 17 C 0.03 1.79 5.37 84.66 0.45 2.24 16 18 N -0.89 -47.81 10.23 21.45 0.22 -47.59 16 19 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 23 C -0.19 -7.94 9.96 30.62 0.30 -7.64 16 24 C -0.19 -7.63 9.93 30.62 0.30 -7.32 16 25 H 0.07 0.93 7.74 -2.39 -0.02 0.91 16 26 H 0.07 0.83 7.98 -2.39 -0.02 0.81 16 27 H 0.06 0.95 7.77 -2.39 -0.02 0.94 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 30 H 0.07 0.71 8.06 -2.39 -0.02 0.69 16 31 H 0.12 1.66 8.05 -2.91 -0.02 1.64 16 32 H 0.08 1.30 5.81 -2.39 -0.01 1.28 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.42 10.42 7.96 -92.70 -0.74 9.68 16 37 H 0.41 18.93 7.49 -92.71 -0.69 18.24 16 38 H 0.03 1.53 8.06 -2.39 -0.02 1.51 16 39 H 0.09 5.06 5.78 -2.39 -0.01 5.04 16 40 H 0.26 13.53 8.32 -92.71 -0.77 12.76 16 41 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 42 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 44 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -59.90 369.93 1.72 -58.18 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -0.43 Total: 40.05 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 5.05 Total: 6.79 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -4.83 Total: -101.27 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -0.11 Total: -48.07 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -59.90 1.72 -58.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342934310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.412 kcal (2) G-P(sol) polarization free energy of solvation -59.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds