Wall clock time and date at job start Tue Mar 31 2020 07:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46962 * 2 1 4 4 H 1.08993 * 109.87227 * 53.32556 * 3 2 1 5 5 C 1.54422 * 109.88330 * 292.15344 * 3 2 1 6 6 C 1.55151 * 102.89740 * 218.39375 * 5 3 2 7 7 C 1.54918 * 101.61602 * 35.50071 * 6 5 3 8 8 N 1.47026 * 109.87806 * 174.33380 * 3 2 1 9 9 C 1.34777 * 125.65381 * 298.32489 * 8 3 2 10 10 O 1.21352 * 119.99240 * 355.25480 * 9 8 3 11 11 C 1.49447 * 120.00135 * 175.25506 * 9 8 3 12 12 O 1.21346 * 119.99762 * 4.27383 * 11 9 8 13 13 N 1.34775 * 119.99720 * 184.27064 * 11 9 8 14 14 C 1.46498 * 119.99891 * 184.97744 * 13 11 9 15 15 C 1.52999 * 109.47385 * 175.27708 * 14 13 11 16 16 C 1.50700 * 115.54564 * 39.60750 * 15 14 13 17 17 H 1.07998 * 120.00295 * 270.85249 * 16 15 14 18 18 C 1.37885 * 120.00111 * 90.85254 * 16 15 14 19 19 N 1.31506 * 119.99922 * 181.70359 * 18 16 15 20 20 Si 1.86797 * 119.99768 * 1.70826 * 18 16 15 21 21 H 1.48493 * 109.47444 * 93.05095 * 20 18 16 22 22 H 1.48508 * 109.46769 * 213.05078 * 20 18 16 23 23 H 1.48501 * 109.47153 * 333.04731 * 20 18 16 24 24 C 1.53001 * 117.50411 * 253.89891 * 15 14 13 25 25 C 1.52997 * 117.50316 * 185.27435 * 15 14 13 26 26 H 1.08997 * 109.46825 * 305.16089 * 1 2 3 27 27 H 1.09000 * 109.46842 * 65.16004 * 1 2 3 28 28 H 1.09004 * 109.46821 * 185.15552 * 1 2 3 29 29 H 1.09010 * 109.47059 * 240.00495 * 2 1 3 30 30 H 1.08993 * 109.46984 * 120.00560 * 2 1 3 31 31 H 1.09001 * 110.76280 * 100.03186 * 5 3 2 32 32 H 1.09006 * 110.72454 * 336.73534 * 5 3 2 33 33 H 1.08996 * 111.00836 * 277.40662 * 6 5 3 34 34 H 1.09007 * 111.00739 * 153.58930 * 6 5 3 35 35 H 1.08993 * 110.36435 * 81.80968 * 7 6 5 36 36 H 1.09000 * 110.36223 * 204.13403 * 7 6 5 37 37 H 0.97000 * 120.00004 * 4.97597 * 13 11 9 38 38 H 1.08995 * 109.47411 * 295.27997 * 14 13 11 39 39 H 1.09006 * 109.47356 * 55.28085 * 14 13 11 40 40 H 0.97005 * 120.00089 * 180.02562 * 19 18 16 41 41 H 1.08998 * 117.49411 * 0.02562 * 24 15 14 42 42 H 1.09005 * 117.49660 * 145.01804 * 24 15 14 43 43 H 1.08997 * 117.50243 * 214.98585 * 25 15 14 44 44 H 1.09008 * 117.49635 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5863 1.9959 0.8221 5 6 1.6988 2.1202 -1.3450 6 6 2.9573 2.9825 -1.6274 7 6 4.0852 2.0819 -1.0647 8 7 3.5039 1.4553 0.1365 9 6 4.1992 0.9745 1.1862 10 8 3.6121 0.5567 2.1626 11 6 5.6930 0.9559 1.1476 12 8 6.2817 1.4440 0.2055 13 7 6.3863 0.3969 2.1592 14 6 7.8491 0.4746 2.1755 15 6 8.3775 -0.1288 3.4784 16 6 7.6659 -1.3684 3.9560 17 1 6.8060 -1.2818 4.6036 18 6 8.1128 -2.6132 3.5663 19 7 7.4719 -3.6935 3.9557 20 14 9.6285 -2.7651 2.4852 21 1 10.8296 -2.9470 3.3393 22 1 9.4791 -3.9368 1.5851 23 1 9.7818 -1.5323 1.6716 24 6 8.9056 0.8369 4.5412 25 6 9.8811 -0.0310 3.7436 26 1 -0.3633 0.5918 0.8401 27 1 -0.3633 0.4317 -0.9326 28 1 -0.3633 -1.0236 0.0924 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.8141 2.7494 -1.2471 32 1 1.5583 1.3748 -2.1278 33 1 2.9100 3.9303 -1.0912 34 1 3.0861 3.1473 -2.6972 35 1 4.3618 1.3203 -1.7937 36 1 4.9531 2.6842 -0.7961 37 1 5.9167 -0.0568 2.8765 38 1 8.2520 -0.0806 1.3284 39 1 8.1584 1.5176 2.1065 40 1 7.7865 -4.5693 3.6818 41 1 8.8763 1.9022 4.3122 42 1 8.7383 0.5757 5.5862 43 1 10.3557 -0.8630 4.2639 44 1 10.4941 0.4630 2.9896 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343799939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:32 Heat of formation + Delta-G solvation = -47.134334 kcal Electronic energy + Delta-G solvation = -24372.219317 eV Core-core repulsion = 20904.282069 eV Total energy + Delta-G solvation = -3467.937248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.58403 -38.82297 -37.42689 -37.05101 -33.80124 -33.33652 -32.18482 -31.57374 -28.02239 -27.28508 -25.64274 -24.66459 -22.89988 -21.98055 -21.77167 -20.55543 -19.60925 -18.91155 -17.38638 -16.87179 -16.33386 -16.05115 -15.31271 -15.19935 -14.80815 -14.57984 -14.28060 -13.82062 -13.77656 -13.47059 -13.15607 -13.02772 -12.84443 -12.50652 -12.42696 -12.28588 -12.18664 -11.72823 -11.54340 -11.34703 -11.20486 -10.96834 -10.88307 -10.83751 -10.54666 -10.49700 -10.24897 -9.62861 -9.25449 -9.07132 -8.79738 -8.67607 -8.60268 -8.31951 -6.19764 -4.26292 1.82645 2.58991 3.24600 3.35750 3.39688 3.61134 3.85191 4.35654 4.41302 4.43254 4.65919 4.78063 4.95233 5.01012 5.06572 5.14539 5.15944 5.26454 5.36727 5.53683 5.56310 5.64016 5.69807 5.81737 5.86444 5.93007 5.93775 6.00918 6.03184 6.07449 6.16187 6.16822 6.38918 6.40044 6.41589 6.65738 6.80299 6.99455 7.04499 7.34121 7.62580 7.79458 8.20285 8.36531 8.55247 8.81319 9.42423 10.90841 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.004132 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.638055 B = 6775.184342 C = 7332.830093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.136 3.864 4 H 0.078 0.922 5 C -0.126 4.126 6 C -0.137 4.137 7 C 0.101 3.899 8 N -0.595 5.595 9 C 0.522 3.478 10 O -0.513 6.513 11 C 0.498 3.502 12 O -0.542 6.542 13 N -0.661 5.661 14 C 0.153 3.847 15 C -0.017 4.017 16 C -0.499 4.499 17 H 0.082 0.918 18 C 0.083 3.917 19 N -0.889 5.889 20 Si 0.881 3.119 21 H -0.279 1.279 22 H -0.295 1.295 23 H -0.256 1.256 24 C -0.178 4.178 25 C -0.193 4.193 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.423 0.577 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.266 0.734 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.601 11.700 -10.939 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C 0.033 3.967 4 H 0.097 0.903 5 C -0.164 4.164 6 C -0.175 4.175 7 C -0.022 4.022 8 N -0.330 5.330 9 C 0.306 3.694 10 O -0.388 6.388 11 C 0.278 3.722 12 O -0.422 6.422 13 N -0.313 5.313 14 C 0.030 3.970 15 C -0.018 4.018 16 C -0.536 4.536 17 H 0.100 0.900 18 C -0.121 4.121 19 N -0.525 5.525 20 Si 0.709 3.291 21 H -0.205 1.205 22 H -0.222 1.222 23 H -0.180 1.180 24 C -0.215 4.215 25 C -0.231 4.231 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.263 0.737 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.441 11.564 -10.952 18.515 hybrid contribution 0.708 -0.568 -0.231 0.936 sum -8.733 10.996 -11.183 17.951 Atomic orbital electron populations 1.21696 0.95004 1.01995 1.01616 1.21921 0.96281 0.96060 1.03452 1.21744 0.79856 0.96914 0.98144 0.90349 1.22751 0.98382 0.99168 0.96141 1.22867 0.94490 0.98472 1.01712 1.22572 0.97014 0.96304 0.86266 1.48331 1.06965 1.58855 1.18887 1.20085 0.88568 0.78606 0.82187 1.90770 1.71006 1.45503 1.31504 1.19894 0.87666 0.80817 0.83846 1.90648 1.70776 1.47308 1.33458 1.45878 1.08281 1.52669 1.24453 1.21150 0.78090 0.98795 0.99000 1.19593 0.92551 0.97490 0.92175 1.20177 1.15085 0.86953 1.31347 0.90027 1.25004 0.96649 0.95547 0.94922 1.69891 1.39737 0.98140 1.44693 0.86839 0.83313 0.77915 0.81006 1.20488 1.22203 1.18030 1.22945 1.05566 0.94967 0.98069 1.22927 0.93734 1.02826 1.03594 0.92552 0.92752 0.92439 0.91735 0.90336 0.90029 0.90295 0.90640 0.89769 0.91160 0.88236 0.73665 0.91802 0.92738 0.92379 0.90812 0.89297 0.89191 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.69 37.16 0.36 -0.97 16 2 C -0.14 -1.64 5.41 -26.73 -0.14 -1.79 16 3 C 0.14 1.58 2.87 -66.90 -0.19 1.39 16 4 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.13 -1.02 5.74 -24.85 -0.14 -1.17 16 6 C -0.14 -1.14 7.08 -24.58 -0.17 -1.32 16 7 C 0.10 1.21 5.97 -2.52 -0.02 1.20 16 8 N -0.60 -8.56 3.06 -163.45 -0.50 -9.06 16 9 C 0.52 9.38 7.64 -11.59 -0.09 9.29 16 10 O -0.51 -10.33 15.66 5.50 0.09 -10.24 16 11 C 0.50 9.63 7.85 -11.59 -0.09 9.54 16 12 O -0.54 -10.66 13.86 5.50 0.08 -10.59 16 13 N -0.66 -13.66 5.36 -60.73 -0.33 -13.98 16 14 C 0.15 3.19 5.67 -4.04 -0.02 3.16 16 15 C -0.02 -0.37 1.21 -155.66 -0.19 -0.56 16 16 C -0.50 -13.09 8.01 -34.44 -0.28 -13.36 16 17 H 0.08 2.34 8.02 -52.49 -0.42 1.92 16 18 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 19 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 20 Si 0.88 21.18 24.88 -169.99 -4.23 16.95 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.26 -5.84 5.54 56.52 0.31 -5.52 16 24 C -0.18 -3.47 9.88 -26.73 -0.26 -3.73 16 25 C -0.19 -3.93 7.21 -26.73 -0.19 -4.12 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.74 8.01 -51.92 -0.42 0.33 16 30 H 0.08 1.18 6.86 -51.93 -0.36 0.82 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.59 7.76 -51.93 -0.40 0.18 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.34 6.34 -51.93 -0.33 1.01 16 37 H 0.42 9.26 6.82 -40.82 -0.28 8.98 16 38 H 0.06 1.40 7.09 -51.93 -0.37 1.03 16 39 H 0.05 1.04 7.94 -51.93 -0.41 0.63 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 42 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 43 H 0.09 1.92 6.66 -51.93 -0.35 1.58 16 44 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -30.05 349.07 -7.56 -37.62 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -7.18 Total: 9.71 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.53 Total: -0.26 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.05 Total: -48.45 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.16 Total: -20.83 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.23 Total: 16.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.05 -7.56 -37.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343799939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.518 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds