Wall clock time and date at job start Tue Mar 31 2020 07:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46962 * 2 1 4 4 H 1.08993 * 109.87227 * 53.32556 * 3 2 1 5 5 C 1.54422 * 109.88330 * 292.15344 * 3 2 1 6 6 C 1.55151 * 102.89740 * 218.39375 * 5 3 2 7 7 C 1.54918 * 101.61602 * 35.50071 * 6 5 3 8 8 N 1.47026 * 109.87806 * 174.33380 * 3 2 1 9 9 C 1.34777 * 125.65381 * 298.32489 * 8 3 2 10 10 O 1.21352 * 119.99240 * 355.25480 * 9 8 3 11 11 C 1.49447 * 120.00135 * 175.25506 * 9 8 3 12 12 O 1.21346 * 119.99762 * 4.27383 * 11 9 8 13 13 N 1.34775 * 119.99720 * 184.27064 * 11 9 8 14 14 C 1.46498 * 119.99891 * 184.97744 * 13 11 9 15 15 C 1.52999 * 109.47385 * 175.27708 * 14 13 11 16 16 C 1.50700 * 115.54564 * 39.60750 * 15 14 13 17 17 H 1.07998 * 120.00295 * 270.85249 * 16 15 14 18 18 C 1.37885 * 120.00111 * 90.85254 * 16 15 14 19 19 N 1.31506 * 119.99922 * 181.70359 * 18 16 15 20 20 Si 1.86797 * 119.99768 * 1.70826 * 18 16 15 21 21 H 1.48493 * 109.47444 * 93.05095 * 20 18 16 22 22 H 1.48508 * 109.46769 * 213.05078 * 20 18 16 23 23 H 1.48501 * 109.47153 * 333.04731 * 20 18 16 24 24 C 1.53001 * 117.50411 * 253.89891 * 15 14 13 25 25 C 1.52997 * 117.50316 * 185.27435 * 15 14 13 26 26 H 1.08997 * 109.46825 * 305.16089 * 1 2 3 27 27 H 1.09000 * 109.46842 * 65.16004 * 1 2 3 28 28 H 1.09004 * 109.46821 * 185.15552 * 1 2 3 29 29 H 1.09010 * 109.47059 * 240.00495 * 2 1 3 30 30 H 1.08993 * 109.46984 * 120.00560 * 2 1 3 31 31 H 1.09001 * 110.76280 * 100.03186 * 5 3 2 32 32 H 1.09006 * 110.72454 * 336.73534 * 5 3 2 33 33 H 1.08996 * 111.00836 * 277.40662 * 6 5 3 34 34 H 1.09007 * 111.00739 * 153.58930 * 6 5 3 35 35 H 1.08993 * 110.36435 * 81.80968 * 7 6 5 36 36 H 1.09000 * 110.36223 * 204.13403 * 7 6 5 37 37 H 0.97000 * 120.00004 * 4.97597 * 13 11 9 38 38 H 1.08995 * 109.47411 * 295.27997 * 14 13 11 39 39 H 1.09006 * 109.47356 * 55.28085 * 14 13 11 40 40 H 0.97005 * 120.00089 * 180.02562 * 19 18 16 41 41 H 1.08998 * 117.49411 * 0.02562 * 24 15 14 42 42 H 1.09005 * 117.49660 * 145.01804 * 24 15 14 43 43 H 1.08997 * 117.50243 * 214.98585 * 25 15 14 44 44 H 1.09008 * 117.49635 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5863 1.9959 0.8221 5 6 1.6988 2.1202 -1.3450 6 6 2.9573 2.9825 -1.6274 7 6 4.0852 2.0819 -1.0647 8 7 3.5039 1.4553 0.1365 9 6 4.1992 0.9745 1.1862 10 8 3.6121 0.5567 2.1626 11 6 5.6930 0.9559 1.1476 12 8 6.2817 1.4440 0.2055 13 7 6.3863 0.3969 2.1592 14 6 7.8491 0.4746 2.1755 15 6 8.3775 -0.1288 3.4784 16 6 7.6659 -1.3684 3.9560 17 1 6.8060 -1.2818 4.6036 18 6 8.1128 -2.6132 3.5663 19 7 7.4719 -3.6935 3.9557 20 14 9.6285 -2.7651 2.4852 21 1 10.8296 -2.9470 3.3393 22 1 9.4791 -3.9368 1.5851 23 1 9.7818 -1.5323 1.6716 24 6 8.9056 0.8369 4.5412 25 6 9.8811 -0.0310 3.7436 26 1 -0.3633 0.5918 0.8401 27 1 -0.3633 0.4317 -0.9326 28 1 -0.3633 -1.0236 0.0924 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.8141 2.7494 -1.2471 32 1 1.5583 1.3748 -2.1278 33 1 2.9100 3.9303 -1.0912 34 1 3.0861 3.1473 -2.6972 35 1 4.3618 1.3203 -1.7937 36 1 4.9531 2.6842 -0.7961 37 1 5.9167 -0.0568 2.8765 38 1 8.2520 -0.0806 1.3284 39 1 8.1584 1.5176 2.1065 40 1 7.7865 -4.5693 3.6818 41 1 8.8763 1.9022 4.3122 42 1 8.7383 0.5757 5.5862 43 1 10.3557 -0.8630 4.2639 44 1 10.4941 0.4630 2.9896 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343799939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:31 Heat of formation + Delta-G solvation = -67.356057 kcal Electronic energy + Delta-G solvation = -24373.096197 eV Core-core repulsion = 20904.282069 eV Total energy + Delta-G solvation = -3468.814128 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.90487 -40.18403 -38.79295 -38.64870 -35.23748 -34.41405 -34.26915 -32.57827 -29.05769 -28.71578 -27.58604 -25.92489 -23.96399 -23.39345 -22.91761 -21.66273 -21.26282 -20.33416 -18.82036 -18.25793 -18.06297 -17.34434 -16.96435 -16.74733 -16.13318 -15.84401 -15.58798 -15.29469 -14.84818 -14.77379 -14.56619 -14.38827 -14.19969 -14.01403 -13.94055 -13.41853 -13.11795 -13.02022 -12.74451 -12.69430 -12.62181 -12.16783 -12.14111 -12.02318 -11.96256 -11.59043 -11.52641 -11.45595 -11.04505 -10.72580 -10.60948 -10.36969 -10.02406 -9.80981 -8.32059 -6.41195 0.34808 1.27632 1.34140 1.38731 1.49695 2.12764 2.34813 2.52277 3.02063 3.14486 3.42178 3.60537 3.69129 3.85681 3.97425 4.16936 4.21457 4.31276 4.32945 4.36538 4.47040 4.52673 4.57053 4.72655 4.74742 4.85016 4.88515 4.93489 4.99119 5.03974 5.09869 5.13144 5.14706 5.16937 5.24158 5.34474 5.36931 5.45948 5.47088 5.66476 6.07368 6.25034 6.32144 6.68604 6.69527 6.96764 7.30363 8.82371 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.004132 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.638055 B = 6775.184342 C = 7332.830093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C 0.126 3.874 4 H 0.074 0.926 5 C -0.115 4.115 6 C -0.124 4.124 7 C 0.091 3.909 8 N -0.588 5.588 9 C 0.516 3.484 10 O -0.548 6.548 11 C 0.498 3.502 12 O -0.544 6.544 13 N -0.673 5.673 14 C 0.160 3.840 15 C -0.046 4.046 16 C -0.487 4.487 17 H 0.039 0.961 18 C 0.027 3.973 19 N -0.942 5.942 20 Si 0.936 3.064 21 H -0.268 1.268 22 H -0.305 1.305 23 H -0.232 1.232 24 C -0.159 4.159 25 C -0.185 4.185 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.414 0.586 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.265 0.735 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 14.313 -13.473 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.024 3.976 4 H 0.092 0.908 5 C -0.152 4.152 6 C -0.162 4.162 7 C -0.031 4.031 8 N -0.321 5.321 9 C 0.299 3.701 10 O -0.426 6.426 11 C 0.279 3.721 12 O -0.424 6.424 13 N -0.323 5.323 14 C 0.037 3.963 15 C -0.047 4.047 16 C -0.525 4.525 17 H 0.058 0.942 18 C -0.172 4.172 19 N -0.581 5.581 20 Si 0.761 3.239 21 H -0.193 1.193 22 H -0.233 1.233 23 H -0.155 1.155 24 C -0.196 4.196 25 C -0.223 4.223 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.131 0.869 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.252 0.748 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.293 14.235 -13.532 21.729 hybrid contribution 0.573 -1.328 0.580 1.559 sum -8.720 12.907 -12.952 20.258 Atomic orbital electron populations 1.21663 0.92606 1.02310 1.03069 1.21888 0.98368 0.95877 1.01437 1.22080 0.77878 0.97106 1.00528 0.90808 1.22786 0.99241 0.99433 0.93762 1.22864 0.92452 0.97658 1.03221 1.22788 0.98249 0.96768 0.85286 1.48531 1.08481 1.56839 1.18269 1.19891 0.88053 0.79236 0.82961 1.90752 1.71244 1.47540 1.33053 1.20158 0.88439 0.80219 0.83328 1.90635 1.71166 1.47283 1.33291 1.45945 1.08483 1.53215 1.24704 1.21078 0.78000 0.99723 0.97517 1.19494 0.94055 0.97089 0.94030 1.20287 1.13713 0.88911 1.29590 0.94241 1.25810 0.99641 0.95221 0.96495 1.70040 1.42036 0.98747 1.47234 0.85956 0.80037 0.78339 0.79536 1.19297 1.23261 1.15464 1.22986 1.03477 0.96228 0.96954 1.23001 0.92475 1.02769 1.04033 0.92556 0.90003 0.92529 0.91570 0.94538 0.87240 0.88968 0.90007 0.86938 0.91080 0.89738 0.74760 0.92888 0.90431 0.92578 0.87625 0.90067 0.90332 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.69 71.98 0.70 -1.62 16 2 C -0.14 -3.22 5.41 30.60 0.17 -3.05 16 3 C 0.13 2.76 2.87 45.38 0.13 2.89 16 4 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 5 C -0.11 -1.42 5.74 31.81 0.18 -1.24 16 6 C -0.12 -1.61 7.08 31.99 0.23 -1.38 16 7 C 0.09 2.03 5.97 86.86 0.52 2.55 16 8 N -0.59 -16.71 3.06 -789.41 -2.42 -19.13 16 9 C 0.52 19.07 7.64 87.27 0.67 19.74 16 10 O -0.55 -23.30 15.66 -3.25 -0.05 -23.35 16 11 C 0.50 19.49 7.85 87.27 0.68 20.17 16 12 O -0.54 -21.08 13.86 -3.23 -0.04 -21.12 16 13 N -0.67 -28.29 5.36 -464.42 -2.49 -30.78 16 14 C 0.16 6.47 5.67 86.38 0.49 6.96 16 15 C -0.05 -1.97 1.21 -52.93 -0.06 -2.04 16 16 C -0.49 -26.40 8.01 25.60 0.21 -26.20 16 17 H 0.04 2.41 8.02 -2.91 -0.02 2.38 16 18 C 0.03 1.53 5.47 84.66 0.46 1.99 16 19 N -0.94 -58.00 13.96 21.45 0.30 -57.71 16 20 Si 0.94 43.67 24.88 68.60 1.71 45.38 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 23 H -0.23 -9.81 5.54 99.48 0.55 -9.26 16 24 C -0.16 -5.85 9.88 30.59 0.30 -5.55 16 25 C -0.19 -7.02 7.21 30.59 0.22 -6.80 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 0.93 7.66 -2.39 -0.02 0.91 16 28 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.07 1.49 8.01 -2.38 -0.02 1.47 16 30 H 0.04 1.16 6.86 -2.39 -0.02 1.14 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.97 7.76 -2.38 -0.02 0.95 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 2.17 6.34 -2.39 -0.02 2.15 16 37 H 0.41 19.09 6.82 -92.71 -0.63 18.46 16 38 H 0.05 2.24 7.09 -2.39 -0.02 2.22 16 39 H 0.08 2.77 7.94 -2.38 -0.02 2.75 16 40 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 41 H 0.11 3.23 8.08 -2.39 -0.02 3.21 16 42 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 43 H 0.08 3.18 6.66 -2.39 -0.02 3.16 16 44 H 0.11 3.42 8.14 -2.38 -0.02 3.40 16 Total: -1.00 -68.97 349.07 2.09 -66.87 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.21 Total: 33.42 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 4.89 Total: 6.43 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -4.61 Total: -107.62 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -0.10 Total: -44.48 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.71 Total: 45.38 kcal Total: -68.97 2.09 -66.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343799939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.484 kcal (2) G-P(sol) polarization free energy of solvation -68.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds