Wall clock time and date at job start Tue Mar 31 2020 07:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00581 * 2 1 4 4 C 1.53002 * 109.46949 * 95.00115 * 3 2 1 5 5 C 1.50705 * 119.99570 * 180.02562 * 2 1 3 6 6 N 1.46501 * 109.47139 * 95.00321 * 5 2 1 7 7 C 1.34774 * 120.00243 * 180.02562 * 6 5 2 8 8 O 1.21357 * 119.99737 * 359.97438 * 7 6 5 9 9 C 1.49450 * 120.00173 * 179.97438 * 7 6 5 10 10 O 1.21345 * 120.00237 * 353.32917 * 9 7 6 11 11 N 1.34779 * 119.99959 * 173.33642 * 9 7 6 12 12 C 1.46926 * 120.62965 * 173.06654 * 11 9 7 13 13 C 1.53192 * 108.89029 * 233.55576 * 12 11 9 14 14 C 1.53071 * 109.29669 * 305.57921 * 13 12 11 15 15 C 1.50702 * 109.44365 * 181.24072 * 14 13 12 16 16 H 1.08007 * 119.99829 * 239.79782 * 15 14 13 17 17 C 1.37879 * 120.00166 * 59.78883 * 15 14 13 18 18 N 1.31515 * 119.99785 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99970 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46998 * 359.97438 * 19 17 15 21 21 H 1.48489 * 109.46978 * 120.00571 * 19 17 15 22 22 H 1.48503 * 109.46712 * 240.00375 * 19 17 15 23 23 C 1.53039 * 109.66157 * 61.15585 * 14 13 12 24 24 C 1.46927 * 120.62872 * 353.08530 * 11 9 7 25 25 H 1.07998 * 119.99679 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.00365 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47471 * 215.00210 * 3 2 1 28 28 H 1.09000 * 109.46887 * 335.00073 * 3 2 1 29 29 H 1.09003 * 109.46894 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47111 * 300.00315 * 4 3 2 31 31 H 1.09000 * 109.47361 * 60.00247 * 4 3 2 32 32 H 1.08993 * 109.47257 * 334.99751 * 5 2 1 33 33 H 1.09003 * 109.47281 * 214.99400 * 5 2 1 34 34 H 0.96998 * 119.99852 * 359.97438 * 6 5 2 35 35 H 1.08995 * 109.58498 * 353.41300 * 12 11 9 36 36 H 1.09003 * 109.58798 * 113.70109 * 12 11 9 37 37 H 1.08998 * 109.49941 * 65.39130 * 13 12 11 38 38 H 1.09008 * 109.49729 * 185.48788 * 13 12 11 39 39 H 1.09009 * 109.34867 * 301.12720 * 14 13 12 40 40 H 0.97002 * 119.99706 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.49875 * 178.74934 * 23 14 13 42 42 H 1.09001 * 109.52161 * 58.66408 * 23 14 13 43 43 H 1.08997 * 109.58946 * 246.15605 * 24 11 9 44 44 H 1.08998 * 109.59100 * 6.44429 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.4275 1.6838 1.4370 5 6 2.0634 -1.3052 -0.0006 6 7 2.4119 -1.6673 -1.3767 7 6 3.0924 -2.8043 -1.6227 8 8 3.4170 -3.5279 -0.7041 9 6 3.4474 -3.1739 -3.0265 10 8 3.0207 -2.5171 -3.9533 11 7 4.2414 -4.2370 -3.2632 12 6 4.4768 -4.7045 -4.6361 13 6 4.1412 -6.1971 -4.7161 14 6 4.9349 -6.9521 -3.6470 15 6 4.6303 -8.4249 -3.7427 16 1 4.2014 -8.9437 -2.8980 17 6 4.8989 -9.1101 -4.9086 18 7 5.4214 -8.4785 -5.9371 19 14 4.5206 -10.9356 -5.0275 20 1 3.9423 -11.4059 -3.7431 21 1 3.5472 -11.1690 -6.1242 22 1 5.7725 -11.6831 -5.3093 23 6 4.5449 -6.4400 -2.2586 24 6 4.8876 -4.9506 -2.1533 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9352 0.0004 27 1 2.9743 1.1988 -0.5895 28 1 1.4387 2.0854 -0.4343 29 1 2.9730 2.6275 1.4370 30 1 1.5169 1.7900 2.0265 31 1 3.0524 0.9034 1.8713 32 1 1.4385 -2.0857 0.4334 33 1 2.9742 -1.1993 0.5888 34 1 2.1521 -1.0891 -2.1109 35 1 3.8405 -4.1494 -5.3253 36 1 5.5231 -4.5507 -4.9002 37 1 3.0745 -6.3399 -4.5432 38 1 4.4042 -6.5767 -5.7036 39 1 6.0010 -6.7907 -3.8074 40 1 5.6107 -8.9607 -6.7572 41 1 5.0951 -6.9946 -1.4985 42 1 3.4744 -6.5786 -2.1067 43 1 5.9679 -4.8191 -2.2140 44 1 4.5242 -4.5561 -1.2044 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345398405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:11 Heat of formation + Delta-G solvation = -49.759604 kcal Electronic energy + Delta-G solvation = -23819.099778 eV Core-core repulsion = 20351.048690 eV Total energy + Delta-G solvation = -3468.051088 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.70328 -38.66003 -37.29237 -36.90251 -34.23876 -33.34009 -31.06074 -30.83172 -30.17728 -27.47148 -26.23070 -24.12330 -23.85405 -22.58387 -21.82005 -20.41803 -19.27846 -18.49474 -17.28950 -16.82970 -16.32949 -15.96774 -15.64076 -15.34987 -15.09035 -14.53134 -14.45574 -14.21559 -13.63734 -13.52347 -13.22136 -13.05282 -12.78984 -12.71986 -12.58239 -12.26000 -12.15145 -11.83921 -11.27699 -11.19250 -11.14429 -10.97599 -10.88633 -10.57583 -10.32384 -10.06503 -9.77575 -9.54208 -9.46516 -9.37406 -8.92433 -8.55344 -8.33687 -8.07487 -5.99906 -4.05993 1.58596 1.60289 2.69962 3.29337 3.37642 3.41130 3.41970 3.83263 4.28979 4.39710 4.43563 4.53976 4.84224 5.00181 5.13386 5.23788 5.29636 5.38774 5.44932 5.57463 5.62533 5.69583 5.84644 5.90560 5.94716 6.04813 6.15403 6.19405 6.35303 6.38819 6.39605 6.62284 6.72894 6.83539 7.03123 7.07330 7.19527 7.34091 7.69813 7.76138 7.89723 7.96184 8.08835 8.25557 8.44075 8.97884 9.58954 11.05610 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035787 B = 0.002914 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.215607 B = 9605.570438 C = 9815.878101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.147 4.147 3 C -0.091 4.091 4 C -0.147 4.147 5 C 0.153 3.847 6 N -0.699 5.699 7 C 0.511 3.489 8 O -0.506 6.506 9 C 0.499 3.501 10 O -0.542 6.542 11 N -0.560 5.560 12 C 0.105 3.895 13 C -0.122 4.122 14 C 0.045 3.955 15 C -0.510 4.510 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.117 4.117 24 C 0.047 3.953 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.413 0.587 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.038 0.962 38 H 0.106 0.894 39 H 0.027 0.973 40 H 0.260 0.740 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 18.668 11.253 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.128 4.128 4 C -0.205 4.205 5 C 0.030 3.970 6 N -0.353 5.353 7 C 0.293 3.707 8 O -0.383 6.383 9 C 0.280 3.720 10 O -0.421 6.421 11 N -0.291 5.291 12 C -0.016 4.016 13 C -0.160 4.160 14 C 0.026 3.974 15 C -0.548 4.548 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.155 4.155 24 C -0.073 4.073 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.249 0.751 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.124 0.876 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.155 18.427 11.248 22.449 hybrid contribution -0.290 -0.890 -0.571 1.096 sum -6.445 17.537 10.677 21.519 Atomic orbital electron populations 1.23932 0.95117 1.02523 0.98081 1.21774 0.95445 0.95114 1.02380 1.20625 1.00256 0.93955 0.97965 1.21738 1.01595 1.01385 0.95753 1.20396 0.99776 0.93801 0.82996 1.45854 1.56249 1.23369 1.09805 1.20538 0.78562 0.81393 0.90179 1.90367 1.52063 1.49385 1.46438 1.19809 0.81111 0.82415 0.88639 1.90704 1.54652 1.51812 1.44927 1.48215 1.43666 1.27164 1.10028 1.22085 1.00929 0.98229 0.80399 1.22041 0.99233 0.89527 1.05234 1.18701 0.95609 0.94343 0.88747 1.21252 1.41180 0.93620 0.98738 0.92624 1.24980 0.95075 0.98169 0.95879 1.69849 1.44002 1.35674 1.03597 0.86556 0.77951 0.85614 0.78006 1.19832 1.21085 1.21072 1.21912 1.00662 0.92312 1.00645 1.23307 0.97022 0.94924 0.92095 0.87816 0.87927 0.90998 0.91079 0.92417 0.92587 0.92407 0.90383 0.90337 0.75082 0.90486 0.91661 0.94294 0.87556 0.95499 0.93043 0.92101 0.93057 0.92466 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 13.88 29.02 0.40 -0.66 16 2 C -0.15 -1.09 4.67 -101.06 -0.47 -1.56 16 3 C -0.09 -0.58 6.10 -27.88 -0.17 -0.75 16 4 C -0.15 -0.86 9.89 37.16 0.37 -0.50 16 5 C 0.15 1.44 5.84 -5.19 -0.03 1.41 16 6 N -0.70 -8.12 5.54 -61.91 -0.34 -8.47 16 7 C 0.51 7.76 7.78 -11.59 -0.09 7.67 16 8 O -0.51 -8.41 13.10 5.49 0.07 -8.34 16 9 C 0.50 8.87 7.74 -11.58 -0.09 8.78 16 10 O -0.54 -10.31 15.94 5.50 0.09 -10.22 16 11 N -0.56 -10.63 2.97 -173.27 -0.52 -11.15 16 12 C 0.10 2.11 6.41 -3.71 -0.02 2.09 16 13 C -0.12 -2.86 5.16 -26.60 -0.14 -3.00 16 14 C 0.04 1.09 2.06 -91.71 -0.19 0.90 16 15 C -0.51 -13.89 8.56 -34.44 -0.29 -14.19 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -25.07 11.30 55.43 0.63 -24.44 16 19 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C -0.12 -2.47 5.30 -26.61 -0.14 -2.61 16 24 C 0.05 0.87 6.27 -3.71 -0.02 0.85 16 25 H 0.10 0.56 7.99 -52.49 -0.42 0.14 16 26 H 0.10 0.69 7.99 -52.49 -0.42 0.27 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.40 7.99 -51.93 -0.41 -0.01 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.76 7.99 -51.93 -0.41 0.35 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.41 4.46 7.95 -40.82 -0.32 4.13 16 35 H 0.08 1.53 7.05 -51.93 -0.37 1.16 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.11 2.75 6.03 -51.92 -0.31 2.44 16 39 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.14 2.51 3.78 -56.75 -0.21 2.30 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -29.69 357.08 -7.78 -37.46 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.08 Total: 3.57 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.99 Total: -0.02 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.23 Total: -44.06 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.16 Total: -18.56 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.69 -7.78 -37.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345398405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.297 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds