Wall clock time and date at job start Tue Mar 31 2020 07:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00581 * 2 1 4 4 C 1.53002 * 109.46949 * 95.00115 * 3 2 1 5 5 C 1.50705 * 119.99570 * 180.02562 * 2 1 3 6 6 N 1.46501 * 109.47139 * 95.00321 * 5 2 1 7 7 C 1.34774 * 120.00243 * 180.02562 * 6 5 2 8 8 O 1.21357 * 119.99737 * 359.97438 * 7 6 5 9 9 C 1.49450 * 120.00173 * 179.97438 * 7 6 5 10 10 O 1.21345 * 120.00237 * 353.32917 * 9 7 6 11 11 N 1.34779 * 119.99959 * 173.33642 * 9 7 6 12 12 C 1.46926 * 120.62965 * 173.06654 * 11 9 7 13 13 C 1.53192 * 108.89029 * 233.55576 * 12 11 9 14 14 C 1.53071 * 109.29669 * 305.57921 * 13 12 11 15 15 C 1.50702 * 109.44365 * 181.24072 * 14 13 12 16 16 H 1.08007 * 119.99829 * 239.79782 * 15 14 13 17 17 C 1.37879 * 120.00166 * 59.78883 * 15 14 13 18 18 N 1.31515 * 119.99785 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99970 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46998 * 359.97438 * 19 17 15 21 21 H 1.48489 * 109.46978 * 120.00571 * 19 17 15 22 22 H 1.48503 * 109.46712 * 240.00375 * 19 17 15 23 23 C 1.53039 * 109.66157 * 61.15585 * 14 13 12 24 24 C 1.46927 * 120.62872 * 353.08530 * 11 9 7 25 25 H 1.07998 * 119.99679 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.00365 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47471 * 215.00210 * 3 2 1 28 28 H 1.09000 * 109.46887 * 335.00073 * 3 2 1 29 29 H 1.09003 * 109.46894 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47111 * 300.00315 * 4 3 2 31 31 H 1.09000 * 109.47361 * 60.00247 * 4 3 2 32 32 H 1.08993 * 109.47257 * 334.99751 * 5 2 1 33 33 H 1.09003 * 109.47281 * 214.99400 * 5 2 1 34 34 H 0.96998 * 119.99852 * 359.97438 * 6 5 2 35 35 H 1.08995 * 109.58498 * 353.41300 * 12 11 9 36 36 H 1.09003 * 109.58798 * 113.70109 * 12 11 9 37 37 H 1.08998 * 109.49941 * 65.39130 * 13 12 11 38 38 H 1.09008 * 109.49729 * 185.48788 * 13 12 11 39 39 H 1.09009 * 109.34867 * 301.12720 * 14 13 12 40 40 H 0.97002 * 119.99706 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.49875 * 178.74934 * 23 14 13 42 42 H 1.09001 * 109.52161 * 58.66408 * 23 14 13 43 43 H 1.08997 * 109.58946 * 246.15605 * 24 11 9 44 44 H 1.08998 * 109.59100 * 6.44429 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.4275 1.6838 1.4370 5 6 2.0634 -1.3052 -0.0006 6 7 2.4119 -1.6673 -1.3767 7 6 3.0924 -2.8043 -1.6227 8 8 3.4170 -3.5279 -0.7041 9 6 3.4474 -3.1739 -3.0265 10 8 3.0207 -2.5171 -3.9533 11 7 4.2414 -4.2370 -3.2632 12 6 4.4768 -4.7045 -4.6361 13 6 4.1412 -6.1971 -4.7161 14 6 4.9349 -6.9521 -3.6470 15 6 4.6303 -8.4249 -3.7427 16 1 4.2014 -8.9437 -2.8980 17 6 4.8989 -9.1101 -4.9086 18 7 5.4214 -8.4785 -5.9371 19 14 4.5206 -10.9356 -5.0275 20 1 3.9423 -11.4059 -3.7431 21 1 3.5472 -11.1690 -6.1242 22 1 5.7725 -11.6831 -5.3093 23 6 4.5449 -6.4400 -2.2586 24 6 4.8876 -4.9506 -2.1533 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9352 0.0004 27 1 2.9743 1.1988 -0.5895 28 1 1.4387 2.0854 -0.4343 29 1 2.9730 2.6275 1.4370 30 1 1.5169 1.7900 2.0265 31 1 3.0524 0.9034 1.8713 32 1 1.4385 -2.0857 0.4334 33 1 2.9742 -1.1993 0.5888 34 1 2.1521 -1.0891 -2.1109 35 1 3.8405 -4.1494 -5.3253 36 1 5.5231 -4.5507 -4.9002 37 1 3.0745 -6.3399 -4.5432 38 1 4.4042 -6.5767 -5.7036 39 1 6.0010 -6.7907 -3.8074 40 1 5.6107 -8.9607 -6.7572 41 1 5.0951 -6.9946 -1.4985 42 1 3.4744 -6.5786 -2.1067 43 1 5.9679 -4.8191 -2.2140 44 1 4.5242 -4.5561 -1.2044 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345398405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:10 Heat of formation + Delta-G solvation = -67.803230 kcal Electronic energy + Delta-G solvation = -23819.882208 eV Core-core repulsion = 20351.048690 eV Total energy + Delta-G solvation = -3468.833519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.03044 -39.96387 -38.62299 -37.98069 -35.57045 -34.80652 -32.93931 -31.86866 -31.38506 -28.67075 -27.78856 -25.57954 -24.42490 -24.25012 -23.37275 -21.74806 -20.69127 -19.57496 -18.52538 -18.47519 -17.98562 -17.12793 -16.83403 -16.49478 -16.32909 -16.07029 -15.51138 -15.37671 -15.01312 -14.79614 -14.59640 -14.50127 -14.02514 -13.90897 -13.74356 -13.45176 -13.22967 -13.08843 -12.85034 -12.76925 -12.54456 -12.36342 -12.12877 -11.94186 -11.74660 -11.67712 -11.45863 -11.24860 -10.86958 -10.47131 -10.39437 -10.29901 -9.93435 -9.69567 -8.08743 -6.22531 0.28211 0.89353 1.39686 1.42249 1.52968 1.56287 2.07769 2.43304 2.56904 3.17406 3.27702 3.67935 3.85278 4.12979 4.30184 4.34038 4.35438 4.43687 4.49365 4.52275 4.59111 4.62540 4.71655 4.77902 4.81863 4.94963 4.96062 5.11398 5.11939 5.16877 5.19488 5.34918 5.39816 5.42331 5.44466 5.61441 5.63382 5.83576 5.95781 5.98808 6.08716 6.30008 6.37681 6.67223 6.87695 6.89264 7.45391 8.95016 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035787 B = 0.002914 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.215607 B = 9605.570438 C = 9815.878101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.155 4.155 3 C -0.089 4.089 4 C -0.147 4.147 5 C 0.151 3.849 6 N -0.680 5.680 7 C 0.516 3.484 8 O -0.521 6.521 9 C 0.498 3.502 10 O -0.554 6.554 11 N -0.569 5.569 12 C 0.116 3.884 13 C -0.111 4.111 14 C 0.042 3.958 15 C -0.532 4.532 16 H 0.050 0.950 17 C 0.013 3.987 18 N -0.915 5.915 19 Si 0.952 3.048 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.280 1.280 23 C -0.109 4.109 24 C 0.057 3.943 25 H 0.120 0.880 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.419 0.581 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.080 0.920 39 H 0.004 0.996 40 H 0.261 0.739 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.066 0.934 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 19.873 12.392 24.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.156 4.156 3 C -0.126 4.126 4 C -0.204 4.204 5 C 0.030 3.970 6 N -0.332 5.332 7 C 0.297 3.703 8 O -0.400 6.400 9 C 0.281 3.719 10 O -0.434 6.434 11 N -0.300 5.300 12 C -0.006 4.006 13 C -0.150 4.150 14 C 0.024 3.976 15 C -0.570 4.570 16 H 0.068 0.932 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.778 3.222 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.205 1.205 23 C -0.147 4.147 24 C -0.064 4.064 25 H 0.139 0.861 26 H 0.120 0.880 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.256 0.744 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.098 0.902 39 H 0.022 0.978 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.041 19.674 12.402 24.299 hybrid contribution -0.087 -1.202 -0.918 1.515 sum -7.128 18.472 11.484 22.889 Atomic orbital electron populations 1.24113 0.94892 1.03351 0.96290 1.21690 0.95608 0.94457 1.03828 1.20627 1.00060 0.93701 0.98242 1.21737 1.01754 1.01472 0.95441 1.20559 1.00201 0.94926 0.81337 1.45854 1.54308 1.21800 1.11219 1.19992 0.79370 0.82391 0.88547 1.90334 1.53336 1.50197 1.46139 1.20278 0.80074 0.81660 0.89909 1.90692 1.54742 1.52104 1.45832 1.48204 1.44494 1.27921 1.09373 1.21796 1.01240 0.95888 0.81698 1.21793 0.97969 0.91829 1.03411 1.18672 0.94252 0.93601 0.91125 1.21588 1.41394 0.95237 0.98768 0.93174 1.25711 0.94982 1.02218 0.95621 1.69970 1.44486 1.37097 1.03919 0.85594 0.77824 0.80768 0.77997 1.19406 1.20751 1.20546 1.21778 0.99988 0.94369 0.98583 1.23297 0.97636 0.92883 0.92562 0.86140 0.88006 0.91622 0.90033 0.91807 0.92196 0.93030 0.90472 0.90090 0.74401 0.90101 0.91196 0.95677 0.90199 0.97833 0.92951 0.91477 0.94007 0.91551 0.82734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 13.88 67.78 0.94 -0.65 16 2 C -0.16 -1.95 4.67 -16.48 -0.08 -2.02 16 3 C -0.09 -0.95 6.10 29.85 0.18 -0.77 16 4 C -0.15 -1.43 9.89 71.98 0.71 -0.72 16 5 C 0.15 2.56 5.84 85.63 0.50 3.06 16 6 N -0.68 -14.53 5.54 -468.13 -2.59 -17.12 16 7 C 0.52 14.87 7.78 87.27 0.68 15.55 16 8 O -0.52 -16.52 13.10 -3.27 -0.04 -16.56 16 9 C 0.50 17.16 7.74 87.27 0.68 17.84 16 10 O -0.55 -20.44 15.94 -3.23 -0.05 -20.49 16 11 N -0.57 -21.25 2.97 -820.48 -2.44 -23.69 16 12 C 0.12 4.68 6.41 86.36 0.55 5.24 16 13 C -0.11 -5.36 5.16 30.68 0.16 -5.20 16 14 C 0.04 2.11 2.06 -11.50 -0.02 2.08 16 15 C -0.53 -29.46 8.56 25.60 0.22 -29.24 16 16 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 17 C 0.01 0.73 5.30 84.66 0.45 1.18 16 18 N -0.91 -52.31 11.30 21.45 0.24 -52.07 16 19 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 C -0.11 -4.60 5.30 30.67 0.16 -4.44 16 24 C 0.06 2.04 6.27 86.37 0.54 2.58 16 25 H 0.12 0.91 7.99 -2.91 -0.02 0.89 16 26 H 0.10 1.12 7.99 -2.91 -0.02 1.10 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 0.71 7.99 -2.39 -0.02 0.69 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 1.36 7.99 -2.39 -0.02 1.34 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.42 8.20 7.95 -92.71 -0.74 7.46 16 35 H 0.08 3.20 7.05 -2.39 -0.02 3.19 16 36 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 4.27 6.03 -2.38 -0.01 4.26 16 39 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 40 H 0.26 14.20 8.31 -92.71 -0.77 13.42 16 41 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.16 5.30 3.78 -78.70 -0.30 5.01 16 Total: -1.00 -63.06 357.08 2.78 -60.28 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.04 Total: 19.29 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 5.67 Total: 4.49 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -4.79 Total: -92.88 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -0.09 Total: -37.05 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -63.06 2.78 -60.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345398405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.521 kcal (2) G-P(sol) polarization free energy of solvation -63.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds