Wall clock time and date at job start Tue Mar 31 2020 07:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47345 * 2 1 4 4 C 1.50704 * 109.47315 * 239.99836 * 2 1 3 5 5 H 1.07999 * 119.99704 * 237.00964 * 4 2 1 6 6 C 1.37877 * 119.99976 * 57.00547 * 4 2 1 7 7 N 1.31516 * 119.99529 * 5.54406 * 6 4 2 8 8 Si 1.86796 * 120.00175 * 185.54373 * 6 4 2 9 9 H 1.48501 * 109.46929 * 85.00188 * 8 6 4 10 10 H 1.48493 * 109.47118 * 204.99954 * 8 6 4 11 11 H 1.48498 * 109.47150 * 325.00504 * 8 6 4 12 12 C 1.53004 * 109.46950 * 120.00052 * 2 1 3 13 13 N 1.46502 * 109.47091 * 299.99504 * 12 2 1 14 14 C 1.34776 * 119.99753 * 180.27460 * 13 12 2 15 15 O 1.21342 * 120.00250 * 359.73139 * 14 13 12 16 16 C 1.49456 * 119.99502 * 179.72712 * 14 13 12 17 17 O 1.21342 * 120.00248 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99502 * 180.02562 * 16 14 13 19 19 C 1.46507 * 119.99881 * 180.02562 * 18 16 14 20 20 H 1.08999 * 109.63645 * 34.57670 * 19 18 16 21 21 C 1.53024 * 109.63908 * 273.94839 * 19 18 16 22 22 C 1.50068 * 110.14449 * 190.87925 * 21 19 18 23 23 C 1.29451 * 124.07646 * 17.12793 * 22 21 19 24 24 C 1.50065 * 124.07339 * 359.52951 * 23 22 21 25 25 C 1.53028 * 110.14724 * 17.13515 * 24 23 22 26 26 H 1.09006 * 109.47111 * 293.93505 * 1 2 3 27 27 H 1.08996 * 109.47252 * 53.93318 * 1 2 3 28 28 H 1.08997 * 109.47062 * 173.93663 * 1 2 3 29 29 H 1.09002 * 109.47525 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47175 * 299.99809 * 3 2 1 31 31 H 1.08999 * 109.47554 * 59.99984 * 3 2 1 32 32 H 0.96999 * 119.99933 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.46786 * 180.02562 * 12 2 1 34 34 H 1.08997 * 109.47417 * 60.00141 * 12 2 1 35 35 H 0.97003 * 119.99930 * 0.02562 * 13 12 2 36 36 H 0.96995 * 120.00454 * 0.02562 * 18 16 14 37 37 H 1.08998 * 109.35932 * 311.07995 * 21 19 18 38 38 H 1.08996 * 109.36296 * 70.67295 * 21 19 18 39 39 H 1.07998 * 117.96678 * 197.10791 * 22 21 19 40 40 H 1.07995 * 117.96146 * 179.50865 * 23 22 21 41 41 H 1.08994 * 109.36146 * 256.92712 * 24 23 22 42 42 H 1.09004 * 109.35472 * 137.34035 * 24 23 22 43 43 H 1.08997 * 109.64045 * 190.87374 * 25 24 23 44 44 H 1.08995 * 109.81768 * 70.35193 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6925 -1.5595 -1.1320 6 6 1.6491 -0.2765 -2.4818 7 7 0.9351 0.8208 -2.6071 8 14 2.1441 -1.2471 -3.9991 9 1 1.1618 -2.3362 -4.2322 10 1 2.1707 -0.3440 -5.1775 11 1 3.4931 -1.8330 -3.7937 12 6 2.0399 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4455 14 6 1.8818 -0.4879 3.6695 15 8 2.5794 -1.4744 3.7809 16 6 1.3887 0.2204 4.8898 17 8 0.6908 1.2067 4.7784 18 7 1.7193 -0.2366 6.1138 19 6 1.2355 0.4573 7.3100 20 1 0.2384 0.8563 7.1239 21 6 2.1923 1.5973 7.6657 22 6 1.8623 2.1444 9.0236 23 6 1.1359 1.5252 9.8981 24 6 0.5140 0.1783 9.6724 25 6 1.1873 -0.5217 8.4899 26 1 -0.3634 0.4169 0.9393 27 1 -0.3633 0.6050 -0.8307 28 1 -0.3633 -1.0219 -0.1085 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 0.6658 1.1263 -3.4874 33 1 3.1300 -0.7209 1.2495 34 1 1.6766 -1.7489 1.2493 35 1 0.9937 0.7579 2.3564 36 1 2.2775 -1.0248 6.2029 37 1 3.2160 1.2229 7.6661 38 1 2.1003 2.3909 6.9243 39 1 2.2556 3.1149 9.2878 40 1 0.9673 2.0079 10.8493 41 1 -0.5484 0.3015 9.4621 42 1 0.6346 -0.4300 10.5688 43 1 0.6118 -1.4042 8.2105 44 1 2.2004 -0.8165 8.7631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348705134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:06 Heat of formation + Delta-G solvation = -72.222180 kcal Electronic energy + Delta-G solvation = -23663.637432 eV Core-core repulsion = 20194.612294 eV Total energy + Delta-G solvation = -3469.025139 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.58200 -39.06549 -37.85336 -36.47719 -34.53628 -33.24626 -31.16316 -30.89235 -29.91367 -26.34030 -25.72883 -25.29433 -24.06463 -23.28706 -21.81558 -20.19917 -19.05988 -18.53155 -17.81318 -16.92665 -16.38098 -15.81489 -15.63735 -15.26016 -14.87706 -14.59537 -14.18082 -13.97535 -13.77091 -13.51930 -13.33737 -12.92821 -12.82337 -12.65899 -12.59319 -12.22061 -11.59920 -11.43676 -11.28601 -11.16443 -11.06876 -10.88323 -10.87594 -10.70936 -10.39710 -10.21265 -9.64684 -9.54193 -9.38075 -9.23357 -9.21226 -8.81057 -8.60051 -8.36555 -6.03422 -4.12995 1.65828 1.98816 2.56578 3.28535 3.35234 3.38181 3.47550 3.90260 4.35235 4.39158 4.41293 4.62203 4.80382 4.91161 4.99439 5.09424 5.20757 5.23633 5.28102 5.49089 5.55097 5.73031 5.79690 5.88516 6.11145 6.18601 6.23393 6.33600 6.46689 6.62770 6.63402 6.82555 6.84564 6.93528 6.99680 7.12543 7.33158 7.55156 7.67438 7.72753 7.97513 7.98474 8.12214 8.32032 8.41194 8.86935 9.52543 10.98665 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043226 B = 0.002719 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.595789 B =10296.606676 C =10533.379659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.495 3.505 15 O -0.536 6.536 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.703 5.703 19 C 0.144 3.856 20 H 0.095 0.905 21 C -0.106 4.106 22 C -0.145 4.145 23 C -0.163 4.163 24 C -0.086 4.086 25 C -0.129 4.129 26 H 0.009 0.991 27 H 0.083 0.917 28 H 0.030 0.970 29 H 0.027 0.973 30 H 0.087 0.913 31 H 0.008 0.992 32 H 0.261 0.739 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.412 0.588 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.109 0.545 22.047 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.006 3.994 13 N -0.332 5.332 14 C 0.274 3.726 15 O -0.414 6.414 16 C 0.290 3.710 17 O -0.394 6.394 18 N -0.356 5.356 19 C 0.039 3.961 20 H 0.113 0.887 21 C -0.144 4.144 22 C -0.163 4.163 23 C -0.181 4.181 24 C -0.124 4.124 25 C -0.167 4.167 26 H 0.028 0.972 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.248 0.752 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.210 0.679 21.846 21.858 hybrid contribution 0.300 -0.389 -0.792 0.932 sum 0.090 0.290 21.054 21.056 Atomic orbital electron populations 1.21834 0.97572 1.00266 0.99290 1.18378 0.92939 0.92849 0.90296 1.21877 0.98639 0.98251 1.00342 1.20933 1.29563 1.14439 0.89829 0.92347 1.24882 0.94946 0.94761 0.98833 1.69830 1.37655 1.21321 1.23372 0.86578 0.79007 0.79890 0.82335 1.20612 1.21324 1.19969 1.21935 0.98527 0.96064 0.82868 1.46237 1.50301 1.31480 1.05177 1.19982 0.82386 0.85251 0.84949 1.90720 1.37945 1.25976 1.86781 1.20506 0.80803 0.84654 0.85044 1.90750 1.36475 1.25412 1.86809 1.45828 1.53046 1.32110 1.04638 1.21099 0.98966 0.92549 0.83456 0.88728 1.20881 0.99740 0.98359 0.95395 1.21990 0.99589 0.99795 0.94960 1.22048 0.99686 0.97034 0.99341 1.20397 0.99868 0.94122 0.97984 1.21904 1.02185 0.98195 0.94376 0.97245 0.89844 0.95066 0.95353 0.89424 0.97330 0.92932 0.92017 0.91967 0.75179 0.75176 0.90284 0.90130 0.87614 0.87741 0.90486 0.90492 0.90604 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.03 37.16 0.30 -2.72 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -3.06 8.11 37.16 0.30 -2.75 16 4 C -0.51 -13.21 8.01 -34.44 -0.28 -13.49 16 5 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 7 N -0.88 -23.62 9.45 55.43 0.52 -23.09 16 8 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.13 2.68 4.50 -4.04 -0.02 2.66 16 13 N -0.68 -12.65 4.90 -60.73 -0.30 -12.95 16 14 C 0.49 8.66 7.89 -11.58 -0.09 8.57 16 15 O -0.54 -10.21 16.48 5.50 0.09 -10.12 16 16 C 0.51 7.75 7.87 -11.58 -0.09 7.66 16 17 O -0.52 -8.92 16.14 5.50 0.09 -8.84 16 18 N -0.70 -8.19 5.08 -54.02 -0.27 -8.46 16 19 C 0.14 1.42 2.51 -67.71 -0.17 1.25 16 20 H 0.09 1.08 7.56 -51.93 -0.39 0.69 16 21 C -0.11 -1.00 5.71 -28.18 -0.16 -1.16 16 22 C -0.14 -1.18 9.80 -35.90 -0.35 -1.53 16 23 C -0.16 -1.18 9.80 -35.90 -0.35 -1.53 16 24 C -0.09 -0.56 6.12 -28.18 -0.17 -0.73 16 25 C -0.13 -0.94 5.49 -26.52 -0.15 -1.08 16 26 H 0.01 0.18 6.71 -51.93 -0.35 -0.17 16 27 H 0.08 2.09 6.25 -51.93 -0.32 1.76 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 2.21 6.10 -51.93 -0.32 1.89 16 31 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 32 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.41 7.53 5.63 -40.82 -0.23 7.30 16 36 H 0.41 4.30 8.08 -40.82 -0.33 3.97 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.10 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 LS Contribution 353.16 15.07 5.32 5.32 Total: -1.00 -28.25 353.16 -7.88 -36.13 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.91 Total: 8.38 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.40 Total: -1.97 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.05 Total: -44.50 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.18 Total: -18.95 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.25 -7.88 -36.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348705134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.090 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds