Wall clock time and date at job start Tue Mar 31 2020 07:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47345 * 2 1 4 4 C 1.50704 * 109.47315 * 239.99836 * 2 1 3 5 5 H 1.07999 * 119.99704 * 237.00964 * 4 2 1 6 6 C 1.37877 * 119.99976 * 57.00547 * 4 2 1 7 7 N 1.31516 * 119.99529 * 5.54406 * 6 4 2 8 8 Si 1.86796 * 120.00175 * 185.54373 * 6 4 2 9 9 H 1.48501 * 109.46929 * 85.00188 * 8 6 4 10 10 H 1.48493 * 109.47118 * 204.99954 * 8 6 4 11 11 H 1.48498 * 109.47150 * 325.00504 * 8 6 4 12 12 C 1.53004 * 109.46950 * 120.00052 * 2 1 3 13 13 N 1.46502 * 109.47091 * 299.99504 * 12 2 1 14 14 C 1.34776 * 119.99753 * 180.27460 * 13 12 2 15 15 O 1.21342 * 120.00250 * 359.73139 * 14 13 12 16 16 C 1.49456 * 119.99502 * 179.72712 * 14 13 12 17 17 O 1.21342 * 120.00248 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99502 * 180.02562 * 16 14 13 19 19 C 1.46507 * 119.99881 * 180.02562 * 18 16 14 20 20 H 1.08999 * 109.63645 * 34.57670 * 19 18 16 21 21 C 1.53024 * 109.63908 * 273.94839 * 19 18 16 22 22 C 1.50068 * 110.14449 * 190.87925 * 21 19 18 23 23 C 1.29451 * 124.07646 * 17.12793 * 22 21 19 24 24 C 1.50065 * 124.07339 * 359.52951 * 23 22 21 25 25 C 1.53028 * 110.14724 * 17.13515 * 24 23 22 26 26 H 1.09006 * 109.47111 * 293.93505 * 1 2 3 27 27 H 1.08996 * 109.47252 * 53.93318 * 1 2 3 28 28 H 1.08997 * 109.47062 * 173.93663 * 1 2 3 29 29 H 1.09002 * 109.47525 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47175 * 299.99809 * 3 2 1 31 31 H 1.08999 * 109.47554 * 59.99984 * 3 2 1 32 32 H 0.96999 * 119.99933 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.46786 * 180.02562 * 12 2 1 34 34 H 1.08997 * 109.47417 * 60.00141 * 12 2 1 35 35 H 0.97003 * 119.99930 * 0.02562 * 13 12 2 36 36 H 0.96995 * 120.00454 * 0.02562 * 18 16 14 37 37 H 1.08998 * 109.35932 * 311.07995 * 21 19 18 38 38 H 1.08996 * 109.36296 * 70.67295 * 21 19 18 39 39 H 1.07998 * 117.96678 * 197.10791 * 22 21 19 40 40 H 1.07995 * 117.96146 * 179.50865 * 23 22 21 41 41 H 1.08994 * 109.36146 * 256.92712 * 24 23 22 42 42 H 1.09004 * 109.35472 * 137.34035 * 24 23 22 43 43 H 1.08997 * 109.64045 * 190.87374 * 25 24 23 44 44 H 1.08995 * 109.81768 * 70.35193 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6925 -1.5595 -1.1320 6 6 1.6491 -0.2765 -2.4818 7 7 0.9351 0.8208 -2.6071 8 14 2.1441 -1.2471 -3.9991 9 1 1.1618 -2.3362 -4.2322 10 1 2.1707 -0.3440 -5.1775 11 1 3.4931 -1.8330 -3.7937 12 6 2.0399 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4455 14 6 1.8818 -0.4879 3.6695 15 8 2.5794 -1.4744 3.7809 16 6 1.3887 0.2204 4.8898 17 8 0.6908 1.2067 4.7784 18 7 1.7193 -0.2366 6.1138 19 6 1.2355 0.4573 7.3100 20 1 0.2384 0.8563 7.1239 21 6 2.1923 1.5973 7.6657 22 6 1.8623 2.1444 9.0236 23 6 1.1359 1.5252 9.8981 24 6 0.5140 0.1783 9.6724 25 6 1.1873 -0.5217 8.4899 26 1 -0.3634 0.4169 0.9393 27 1 -0.3633 0.6050 -0.8307 28 1 -0.3633 -1.0219 -0.1085 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 0.6658 1.1263 -3.4874 33 1 3.1300 -0.7209 1.2495 34 1 1.6766 -1.7489 1.2493 35 1 0.9937 0.7579 2.3564 36 1 2.2775 -1.0248 6.2029 37 1 3.2160 1.2229 7.6661 38 1 2.1003 2.3909 6.9243 39 1 2.2556 3.1149 9.2878 40 1 0.9673 2.0079 10.8493 41 1 -0.5484 0.3015 9.4621 42 1 0.6346 -0.4300 10.5688 43 1 0.6118 -1.4042 8.2105 44 1 2.2004 -0.8165 8.7631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348705134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:06 Heat of formation + Delta-G solvation = -89.432495 kcal Electronic energy + Delta-G solvation = -23664.383728 eV Core-core repulsion = 20194.612294 eV Total energy + Delta-G solvation = -3469.771434 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82028 -40.19430 -38.91781 -38.19819 -35.64202 -34.83877 -32.75338 -31.76110 -30.74703 -27.91274 -27.59995 -27.20862 -25.26306 -24.06560 -22.75466 -21.47116 -20.72024 -19.85238 -18.65441 -18.02910 -17.80605 -17.25917 -16.96401 -16.63396 -16.37167 -15.93023 -15.49686 -15.11209 -14.77181 -14.58136 -14.45167 -14.40668 -14.07832 -14.03830 -13.41063 -13.26122 -13.23764 -13.11576 -12.82550 -12.70220 -12.59787 -12.27387 -12.13832 -12.03024 -11.76246 -11.52988 -11.51022 -11.30296 -10.76988 -10.62279 -10.40960 -10.30845 -10.12371 -9.87264 -8.02494 -6.17811 0.34029 1.33875 1.40802 1.44846 1.47575 1.55025 2.14048 2.45330 2.69812 3.21857 3.43913 3.69520 3.77052 3.98694 4.22858 4.33943 4.39055 4.42994 4.46796 4.61024 4.65586 4.67318 4.83548 4.92248 4.94673 5.02735 5.04701 5.05795 5.15800 5.17933 5.20815 5.21877 5.34084 5.47475 5.64009 5.67978 5.74107 5.95123 6.04984 6.09190 6.17895 6.38958 6.41015 6.74341 6.86477 6.96242 7.49875 8.97482 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043226 B = 0.002719 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.595789 B =10296.606676 C =10533.379659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.124 4.124 4 C -0.528 4.528 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.143 3.857 13 N -0.682 5.682 14 C 0.497 3.503 15 O -0.550 6.550 16 C 0.515 3.485 17 O -0.542 6.542 18 N -0.684 5.684 19 C 0.140 3.860 20 H 0.080 0.920 21 C -0.102 4.102 22 C -0.163 4.163 23 C -0.155 4.155 24 C -0.088 4.088 25 C -0.123 4.123 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.063 0.937 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.413 0.587 36 H 0.420 0.580 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 -0.053 24.018 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.182 4.182 4 C -0.566 4.566 5 H 0.070 0.930 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.020 3.980 13 N -0.334 5.334 14 C 0.278 3.722 15 O -0.429 6.429 16 C 0.295 3.705 17 O -0.419 6.419 18 N -0.336 5.336 19 C 0.037 3.963 20 H 0.098 0.902 21 C -0.140 4.140 22 C -0.182 4.182 23 C -0.173 4.173 24 C -0.125 4.125 25 C -0.161 4.161 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.258 0.742 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.167 0.066 23.860 23.860 hybrid contribution 0.293 -0.213 -1.319 1.368 sum 0.126 -0.147 22.541 22.542 Atomic orbital electron populations 1.21686 0.97318 0.99507 0.99473 1.18375 0.93118 0.92959 0.90549 1.21726 0.98235 0.98061 1.00142 1.21232 1.29648 1.14537 0.91201 0.92997 1.25502 0.95146 0.95534 1.01123 1.69949 1.38197 1.22102 1.23707 0.85726 0.78632 0.78682 0.79482 1.20395 1.21171 1.19794 1.21546 0.97911 0.95550 0.82982 1.46090 1.50664 1.31554 1.05066 1.20352 0.81675 0.84912 0.85275 1.90709 1.38491 1.26652 1.87082 1.20039 0.80922 0.84319 0.85236 1.90750 1.37791 1.26332 1.87005 1.45829 1.51882 1.31862 1.04054 1.21285 0.98171 0.93451 0.83411 0.90214 1.20804 0.99863 0.97512 0.95855 1.21989 1.01131 1.00561 0.94493 1.22292 0.98274 0.97184 0.99576 1.20477 0.99797 0.93926 0.98319 1.21907 1.03146 0.97684 0.93341 0.95061 0.92084 0.95684 0.95774 0.91793 0.95254 0.93056 0.92736 0.92606 0.74928 0.74231 0.89913 0.92286 0.86968 0.86169 0.90181 0.88431 0.89903 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.03 71.98 0.58 -4.99 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 3 C -0.12 -5.67 8.11 71.98 0.58 -5.09 16 4 C -0.53 -27.51 8.01 25.60 0.20 -27.31 16 5 H 0.05 2.71 7.75 -2.91 -0.02 2.69 16 6 C 0.03 1.41 5.13 84.65 0.43 1.85 16 7 N -0.90 -48.53 9.45 21.45 0.20 -48.33 16 8 Si 0.95 42.31 29.54 68.60 2.03 44.33 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 C 0.14 5.95 4.50 86.38 0.39 6.33 16 13 N -0.68 -24.90 4.90 -464.40 -2.27 -27.18 16 14 C 0.50 16.99 7.89 87.27 0.69 17.68 16 15 O -0.55 -20.43 16.48 -3.22 -0.05 -20.49 16 16 C 0.51 15.21 7.87 87.27 0.69 15.90 16 17 O -0.54 -18.30 16.14 -3.22 -0.05 -18.36 16 18 N -0.68 -15.01 5.08 -443.20 -2.25 -17.26 16 19 C 0.14 2.58 2.51 45.13 0.11 2.69 16 20 H 0.08 1.75 7.56 -2.39 -0.02 1.73 16 21 C -0.10 -1.85 5.71 29.66 0.17 -1.68 16 22 C -0.16 -2.41 9.80 27.03 0.27 -2.14 16 23 C -0.16 -1.86 9.80 27.03 0.26 -1.59 16 24 C -0.09 -0.88 6.12 29.66 0.18 -0.70 16 25 C -0.12 -1.48 5.49 30.73 0.17 -1.31 16 26 H 0.03 1.24 6.71 -2.38 -0.02 1.23 16 27 H 0.06 3.07 6.25 -2.39 -0.01 3.05 16 28 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 3.25 6.10 -2.39 -0.01 3.24 16 31 H 0.03 1.18 6.86 -2.39 -0.02 1.16 16 32 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 33 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.41 14.79 5.63 -92.71 -0.52 14.27 16 36 H 0.42 8.01 8.08 -92.71 -0.75 7.26 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.11 1.48 8.06 -2.91 -0.02 1.45 16 40 H 0.12 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 0.87 8.13 -2.39 -0.02 0.85 16 Total: -1.00 -59.60 353.16 2.03 -57.56 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.26 Total: 27.76 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 4.70 Total: 1.96 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -4.32 Total: -92.77 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.11 Total: -38.84 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -59.60 2.03 -57.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348705134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.868 kcal (2) G-P(sol) polarization free energy of solvation -59.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds