Wall clock time and date at job start Tue Mar 31 2020 07:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47124 * 2 1 4 4 C 1.50697 * 109.47185 * 240.00044 * 2 1 3 5 5 H 1.07998 * 119.99950 * 240.00072 * 4 2 1 6 6 C 1.37877 * 120.00246 * 59.99921 * 4 2 1 7 7 N 1.31519 * 119.99690 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00236 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46877 * 59.99916 * 8 6 4 10 10 H 1.48503 * 109.47212 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47053 * 300.00114 * 8 6 4 12 12 C 1.52995 * 109.47288 * 119.99824 * 2 1 3 13 13 N 1.46503 * 109.47172 * 300.00207 * 12 2 1 14 14 C 1.34779 * 120.00011 * 180.02562 * 13 12 2 15 15 O 1.21348 * 119.99858 * 359.97438 * 14 13 12 16 16 C 1.49451 * 119.99916 * 180.02562 * 14 13 12 17 17 O 1.21343 * 120.00083 * 359.97438 * 16 14 13 18 18 N 1.34779 * 119.99916 * 180.02562 * 16 14 13 19 19 C 1.46494 * 119.99874 * 180.02562 * 18 16 14 20 20 H 1.09001 * 109.64166 * 324.57249 * 19 18 16 21 21 C 1.53027 * 109.64589 * 84.99679 * 19 18 16 22 22 C 1.50070 * 110.14693 * 169.33097 * 21 19 18 23 23 C 1.29443 * 124.07366 * 343.13269 * 22 21 19 24 24 C 1.50065 * 124.07980 * 359.94620 * 23 22 21 25 25 C 1.53022 * 110.19829 * 343.32387 * 24 23 22 26 26 H 1.09003 * 109.46786 * 300.00257 * 1 2 3 27 27 H 1.09000 * 109.47520 * 60.00045 * 1 2 3 28 28 H 1.08999 * 109.46906 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47603 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47099 * 299.99838 * 3 2 1 31 31 H 1.08994 * 109.47403 * 59.99896 * 3 2 1 32 32 H 0.97001 * 119.99664 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47356 * 180.02562 * 12 2 1 34 34 H 1.08999 * 109.47173 * 60.00131 * 12 2 1 35 35 H 0.96996 * 120.00004 * 359.97438 * 13 12 2 36 36 H 0.97005 * 120.00165 * 359.97438 * 18 16 14 37 37 H 1.09000 * 109.35884 * 49.12511 * 21 19 18 38 38 H 1.09003 * 109.35536 * 289.54017 * 21 19 18 39 39 H 1.08002 * 117.95792 * 162.84160 * 22 21 19 40 40 H 1.08004 * 117.95536 * 180.19025 * 23 22 21 41 41 H 1.09002 * 109.48570 * 223.00094 * 24 23 22 42 42 H 1.08994 * 109.06324 * 103.38489 * 24 23 22 43 43 H 1.08993 * 109.64759 * 289.55912 * 25 24 23 44 44 H 1.09007 * 109.63952 * 168.92655 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4206 -5.2205 11 1 3.8064 -1.1210 -4.0081 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5754 -1.4773 3.7808 16 6 1.3790 0.2135 4.8898 17 8 0.6810 1.1998 4.7784 18 7 1.7055 -0.2463 6.1139 19 6 1.2163 0.4436 7.3100 20 1 1.1840 1.5175 7.1261 21 6 -0.1859 -0.0612 7.6577 22 6 -0.5934 0.4376 9.0132 23 6 0.2327 0.9104 9.8905 24 6 1.7134 1.0249 9.6753 25 6 2.1449 0.1512 8.4954 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.7081 1.1608 -3.4844 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7488 1.2492 35 1 0.9943 0.7583 2.3564 36 1 2.2639 -1.0346 6.2029 37 1 -0.1877 -1.1512 7.6582 38 1 -0.8947 0.2989 6.9121 39 1 -1.6417 0.4040 9.2710 40 1 -0.1684 1.2395 10.8378 41 1 2.2376 0.7020 10.5748 42 1 1.9632 2.0648 9.4653 43 1 2.0676 -0.9006 8.7707 44 1 3.1734 0.3869 8.2219 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348705135.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:09 Heat of formation + Delta-G solvation = -89.581625 kcal Electronic energy + Delta-G solvation = -23666.255493 eV Core-core repulsion = 20196.477592 eV Total energy + Delta-G solvation = -3469.777901 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.82024 -40.19420 -38.91772 -38.19861 -35.64473 -34.84093 -32.74859 -31.76169 -30.74737 -27.91122 -27.59567 -27.20985 -25.26492 -24.06666 -22.75581 -21.46542 -20.72103 -19.84613 -18.65764 -18.03120 -17.80298 -17.25781 -16.96300 -16.64175 -16.37144 -15.93549 -15.49713 -15.11412 -14.77644 -14.58023 -14.45312 -14.40789 -14.07781 -14.03646 -13.41115 -13.23750 -13.21253 -13.12971 -12.82623 -12.68555 -12.62149 -12.27856 -12.12899 -12.02735 -11.76448 -11.53203 -11.51215 -11.30361 -10.77036 -10.62073 -10.40953 -10.30912 -10.12629 -9.87379 -8.01499 -6.18231 0.33926 1.33780 1.40762 1.46296 1.47563 1.54116 2.13958 2.45424 2.69825 3.22343 3.43902 3.69338 3.76970 3.98461 4.22719 4.34034 4.39054 4.42760 4.46745 4.61354 4.65501 4.67154 4.83495 4.91930 4.94554 5.03164 5.05128 5.05736 5.16421 5.17985 5.21029 5.21803 5.33903 5.47459 5.64075 5.67181 5.74004 5.95088 6.04919 6.10590 6.18436 6.39303 6.41333 6.74276 6.86178 6.96173 7.49812 8.97649 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043158 B = 0.002719 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.626022 B =10295.062021 C =10528.053872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.051 3.949 3 C -0.124 4.124 4 C -0.527 4.527 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.902 5.902 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.143 3.857 13 N -0.682 5.682 14 C 0.497 3.503 15 O -0.550 6.550 16 C 0.515 3.485 17 O -0.542 6.542 18 N -0.683 5.683 19 C 0.140 3.860 20 H 0.079 0.921 21 C -0.103 4.103 22 C -0.163 4.163 23 C -0.155 4.155 24 C -0.088 4.088 25 C -0.122 4.122 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.413 0.587 36 H 0.420 0.580 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.058 0.018 23.953 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 C -0.182 4.182 4 C -0.566 4.566 5 H 0.070 0.930 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.020 3.980 13 N -0.334 5.334 14 C 0.278 3.722 15 O -0.429 6.429 16 C 0.295 3.705 17 O -0.419 6.419 18 N -0.336 5.336 19 C 0.037 3.963 20 H 0.097 0.903 21 C -0.141 4.141 22 C -0.182 4.182 23 C -0.173 4.173 24 C -0.125 4.125 25 C -0.160 4.160 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.251 0.749 36 H 0.258 0.742 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.029 0.145 23.793 23.793 hybrid contribution 0.039 -0.391 -1.306 1.364 sum 0.010 -0.247 22.487 22.488 Atomic orbital electron populations 1.21713 0.97405 0.98901 1.00199 1.18367 0.93102 0.92983 0.90512 1.21712 0.98253 0.98058 1.00205 1.21220 1.31868 1.12325 0.91161 0.92988 1.25506 0.95105 0.95569 1.01181 1.69923 1.36952 1.23431 1.23713 0.85761 0.78663 0.78760 0.79288 1.20089 1.21128 1.20055 1.21556 0.97949 0.95496 0.82992 1.46082 1.50761 1.31446 1.05062 1.20354 0.81684 0.84908 0.85277 1.90711 1.38496 1.26651 1.87087 1.20036 0.80968 0.84281 0.85229 1.90750 1.37744 1.26364 1.87012 1.45819 1.51667 1.32083 1.04041 1.21275 0.94403 0.97178 0.83458 0.90278 1.20809 0.95922 1.01448 0.95888 1.21986 1.00224 1.01470 0.94516 1.22297 0.95725 0.99732 0.99576 1.20483 0.93253 1.00402 0.98385 1.21906 0.98948 1.01947 0.93235 0.95222 0.91765 0.95750 0.95718 0.91777 0.95202 0.93036 0.92670 0.92700 0.74945 0.74225 0.89951 0.92305 0.86990 0.86165 0.88362 0.90211 0.89831 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.08 71.98 0.58 -5.12 16 2 C 0.05 2.37 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.70 8.08 71.98 0.58 -5.11 16 4 C -0.53 -27.48 8.01 25.60 0.21 -27.28 16 5 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 6 C 0.03 1.37 5.15 84.65 0.44 1.81 16 7 N -0.90 -48.52 9.35 21.45 0.20 -48.32 16 8 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 9 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 12 C 0.14 5.95 4.50 86.38 0.39 6.34 16 13 N -0.68 -24.95 4.95 -464.41 -2.30 -27.25 16 14 C 0.50 17.02 7.89 87.27 0.69 17.71 16 15 O -0.55 -20.46 16.48 -3.24 -0.05 -20.52 16 16 C 0.51 15.24 7.86 87.27 0.69 15.93 16 17 O -0.54 -18.34 16.15 -3.23 -0.05 -18.39 16 18 N -0.68 -15.04 5.09 -443.20 -2.26 -17.30 16 19 C 0.14 2.59 2.50 45.13 0.11 2.70 16 20 H 0.08 1.74 7.58 -2.39 -0.02 1.72 16 21 C -0.10 -1.87 5.70 29.66 0.17 -1.70 16 22 C -0.16 -2.43 9.80 27.04 0.27 -2.16 16 23 C -0.16 -1.87 9.80 27.04 0.27 -1.60 16 24 C -0.09 -0.88 6.11 29.66 0.18 -0.70 16 25 C -0.12 -1.47 5.50 30.73 0.17 -1.30 16 26 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 27 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 28 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 31 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 32 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 33 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.41 14.83 5.63 -92.71 -0.52 14.31 16 36 H 0.42 8.03 8.08 -92.70 -0.75 7.28 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.12 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 0.87 8.12 -2.39 -0.02 0.85 16 44 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -59.53 353.10 2.00 -57.52 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.26 Total: 28.11 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 4.70 Total: 1.86 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -4.36 Total: -92.87 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.11 Total: -38.91 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -59.53 2.00 -57.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348705135.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.057 kcal (2) G-P(sol) polarization free energy of solvation -59.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds