Wall clock time and date at job start Tue Mar 31 2020 07:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50705 * 119.99777 * 2 1 4 4 C 1.31005 * 120.00375 * 180.02562 * 2 1 3 5 5 C 1.50697 * 119.99671 * 354.87951 * 4 2 1 6 6 N 1.46503 * 109.47182 * 125.76321 * 5 4 2 7 7 C 1.34776 * 120.00119 * 179.97438 * 6 5 4 8 8 O 1.21352 * 119.99582 * 359.97438 * 7 6 5 9 9 C 1.49448 * 119.99923 * 180.02562 * 7 6 5 10 10 O 1.21350 * 119.99977 * 6.02168 * 9 7 6 11 11 N 1.34775 * 119.99708 * 186.01980 * 9 7 6 12 12 C 1.46918 * 120.63339 * 355.78447 * 11 9 7 13 13 C 1.53196 * 108.77390 * 126.41428 * 12 11 9 14 14 C 1.53030 * 109.33853 * 54.62039 * 13 12 11 15 15 C 1.53044 * 109.54129 * 298.68406 * 14 13 12 16 16 H 1.08997 * 109.49404 * 301.34953 * 15 14 13 17 17 C 1.50705 * 109.49707 * 181.28431 * 15 14 13 18 18 H 1.08001 * 119.99913 * 0.06659 * 17 15 14 19 19 C 1.37872 * 119.99731 * 180.33772 * 17 15 14 20 20 N 1.31517 * 120.00164 * 359.72799 * 19 17 15 21 21 Si 1.86796 * 120.00105 * 179.72375 * 19 17 15 22 22 H 1.48505 * 109.46997 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47247 * 120.00452 * 21 19 17 24 24 H 1.48500 * 109.47381 * 240.00278 * 21 19 17 25 25 C 1.46929 * 120.62664 * 175.81185 * 11 9 7 26 26 H 1.09001 * 109.47129 * 244.93626 * 1 2 3 27 27 H 1.09001 * 109.47484 * 4.93813 * 1 2 3 28 28 H 1.08999 * 109.46836 * 124.93731 * 1 2 3 29 29 H 1.09005 * 109.47171 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47083 * 299.99805 * 3 2 1 31 31 H 1.08993 * 109.47402 * 59.99974 * 3 2 1 32 32 H 1.07994 * 119.99827 * 174.88207 * 4 2 1 33 33 H 1.09007 * 109.47108 * 5.76201 * 5 4 2 34 34 H 1.09000 * 109.46980 * 245.76530 * 5 4 2 35 35 H 0.96995 * 119.99408 * 359.97438 * 6 5 4 36 36 H 1.09003 * 109.59307 * 246.20033 * 12 11 9 37 37 H 1.09006 * 109.58584 * 6.48734 * 12 11 9 38 38 H 1.08999 * 109.49746 * 174.58750 * 13 12 11 39 39 H 1.09000 * 109.49716 * 294.68500 * 13 12 11 40 40 H 1.09003 * 109.48930 * 178.64452 * 14 13 12 41 41 H 1.08998 * 109.43569 * 58.69296 * 14 13 12 42 42 H 0.96997 * 120.00388 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.58759 * 113.79835 * 25 11 9 44 44 H 1.08994 * 109.70543 * 353.44260 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1621 -1.1345 -0.0005 5 6 1.4131 -2.4370 0.1154 6 7 1.7815 -3.3131 -0.9996 7 6 1.2323 -4.5395 -1.1029 8 8 0.4330 -4.9183 -0.2721 9 6 1.6085 -5.4333 -2.2400 10 8 2.4872 -5.1009 -3.0081 11 7 0.9718 -6.6087 -2.4124 12 6 -0.0291 -7.0676 -1.4397 13 6 -1.3277 -7.3925 -2.1846 14 6 -1.0331 -8.3942 -3.3034 15 6 -0.0470 -7.7762 -4.2973 16 1 -0.4703 -6.8592 -4.7072 17 6 0.2181 -8.7515 -5.4152 18 1 -0.2689 -9.7155 -5.4176 19 6 1.0865 -8.4152 -6.4319 20 7 1.6794 -7.2413 -6.4290 21 14 1.4210 -9.6270 -7.8136 22 1 0.6357 -10.8666 -7.5857 23 1 1.0242 -9.0214 -9.1101 24 1 2.8688 -9.9562 -7.8436 25 6 1.2661 -7.4557 -3.5763 26 1 -0.3633 -0.4354 0.9309 27 1 -0.3634 1.0238 -0.0885 28 1 -0.3633 -0.5885 -0.8425 29 1 3.3321 1.1060 -0.0005 30 1 1.9971 1.8767 -0.8900 31 1 1.9971 1.8767 0.8899 32 1 3.2388 -1.1362 -0.0839 33 1 0.3408 -2.2434 0.0864 34 1 1.6696 -2.9210 1.0578 35 1 2.4206 -3.0103 -1.6634 36 1 0.3357 -7.9617 -0.9341 37 1 -0.2127 -6.2823 -0.7063 38 1 -2.0474 -7.8247 -1.4895 39 1 -1.7392 -6.4790 -2.6139 40 1 -1.9596 -8.6456 -3.8197 41 1 -0.5993 -9.2982 -2.8759 42 1 2.2906 -7.0048 -7.1441 43 1 1.7365 -8.3814 -3.2450 44 1 1.9361 -6.9279 -4.2549 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350757287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:23 Heat of formation + Delta-G solvation = -50.622315 kcal Electronic energy + Delta-G solvation = -23962.468334 eV Core-core repulsion = 20494.379835 eV Total energy + Delta-G solvation = -3468.088498 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.48857 -38.43034 -37.20032 -36.79114 -34.42852 -33.17537 -31.70465 -29.72433 -29.41556 -28.08866 -26.03876 -25.00235 -24.23374 -22.11250 -21.77279 -20.29723 -18.99334 -18.13979 -17.11348 -16.62500 -16.17441 -15.90843 -15.39434 -15.07609 -14.78746 -14.52284 -14.25330 -13.88719 -13.78327 -13.69840 -13.22521 -12.88141 -12.72773 -12.61953 -12.51832 -12.23387 -12.08881 -11.91193 -11.77173 -11.39717 -11.22214 -10.99049 -10.65722 -10.43350 -10.26976 -10.02529 -9.85685 -9.44599 -9.18779 -9.10385 -9.01309 -8.48006 -8.37590 -7.80358 -6.01382 -4.09535 1.67998 1.82611 2.87425 3.29834 3.38054 3.41488 3.68424 4.05281 4.41940 4.42432 4.59608 4.74287 4.96768 5.11708 5.20117 5.24209 5.29132 5.43015 5.49654 5.53266 5.65567 5.68382 5.71620 5.75118 5.89037 6.09041 6.28051 6.29663 6.40611 6.52097 6.62137 6.66425 6.79626 6.88214 7.00737 7.07437 7.20142 7.28748 7.60908 7.84384 7.96552 8.03619 8.19186 8.36636 8.60811 8.94783 9.56035 11.04152 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022239 B = 0.003391 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.722341 B = 8255.109459 C = 9007.682108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C -0.120 4.120 4 C -0.190 4.190 5 C 0.145 3.855 6 N -0.700 5.700 7 C 0.512 3.488 8 O -0.517 6.517 9 C 0.494 3.506 10 O -0.525 6.525 11 N -0.566 5.566 12 C 0.045 3.955 13 C -0.130 4.130 14 C -0.113 4.113 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.518 4.518 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.882 5.882 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.107 3.893 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.414 0.586 36 H 0.056 0.944 37 H 0.149 0.851 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.263 0.737 43 H 0.048 0.952 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 13.133 14.300 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.106 4.106 3 C -0.176 4.176 4 C -0.208 4.208 5 C 0.022 3.978 6 N -0.353 5.353 7 C 0.294 3.706 8 O -0.395 6.395 9 C 0.275 3.725 10 O -0.403 6.403 11 N -0.297 5.297 12 C -0.076 4.076 13 C -0.168 4.168 14 C -0.151 4.151 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.557 4.557 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.520 5.520 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.013 4.013 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.136 0.864 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.251 0.749 36 H 0.074 0.926 37 H 0.165 0.835 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.834 13.128 14.368 19.480 hybrid contribution 0.553 -0.623 -1.140 1.412 sum -0.281 12.504 13.228 18.205 Atomic orbital electron populations 1.20931 0.92107 1.02711 1.02639 1.21740 0.96051 0.95077 0.97749 1.20895 0.99636 0.94827 1.02270 1.22697 0.99983 0.92957 1.05189 1.20531 0.99583 0.87851 0.89830 1.45870 1.45800 1.14817 1.28772 1.20812 0.80744 0.82581 0.86415 1.90241 1.33906 1.72431 1.42945 1.19750 0.84031 0.83197 0.85567 1.90760 1.30722 1.73492 1.45298 1.48450 1.37641 1.18190 1.25451 1.23219 0.88103 1.03315 0.93000 1.21893 0.96517 1.00070 0.98304 1.21664 0.99994 0.97334 0.96110 1.18974 0.90310 0.96575 0.92010 0.95284 1.21137 1.26580 1.01779 1.06155 0.92200 1.25065 0.95776 0.95264 0.98018 1.69884 1.29080 1.20006 1.33040 0.86514 0.78038 0.81299 0.82032 1.19773 1.21009 1.20959 1.22479 1.02153 0.92398 0.84225 0.91114 0.91808 0.90916 0.91809 0.91294 0.91321 0.86416 0.90253 0.90299 0.74929 0.92569 0.83522 0.92260 0.92508 0.93112 0.93237 0.92705 0.93405 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 8.54 36.00 0.31 -0.64 16 2 C -0.11 -0.83 6.05 -101.07 -0.61 -1.45 16 3 C -0.12 -0.75 10.04 36.01 0.36 -0.39 16 4 C -0.19 -1.66 9.23 -36.03 -0.33 -1.99 16 5 C 0.14 1.53 5.93 -5.19 -0.03 1.50 16 6 N -0.70 -9.35 5.54 -61.91 -0.34 -9.69 16 7 C 0.51 8.59 7.81 -11.59 -0.09 8.50 16 8 O -0.52 -8.89 13.01 5.50 0.07 -8.82 16 9 C 0.49 10.16 7.76 -11.59 -0.09 10.07 16 10 O -0.53 -12.16 15.92 5.50 0.09 -12.07 16 11 N -0.57 -12.05 2.97 -173.28 -0.51 -12.56 16 12 C 0.05 0.82 6.27 -3.71 -0.02 0.80 16 13 C -0.13 -2.34 6.08 -26.61 -0.16 -2.50 16 14 C -0.11 -2.37 5.11 -26.69 -0.14 -2.50 16 15 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.52 -14.13 8.57 -34.44 -0.30 -14.42 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 20 N -0.88 -25.56 11.38 55.43 0.63 -24.92 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C 0.11 2.65 5.38 -3.71 -0.02 2.63 16 26 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 27 H 0.06 0.40 8.01 -51.93 -0.42 -0.02 16 28 H 0.07 0.61 7.62 -51.93 -0.40 0.21 16 29 H 0.06 0.38 7.79 -51.93 -0.40 -0.03 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.12 0.94 7.84 -52.49 -0.41 0.53 16 33 H 0.08 0.84 5.80 -51.93 -0.30 0.54 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.41 5.34 7.95 -40.82 -0.32 5.01 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.15 2.60 3.71 -57.19 -0.21 2.39 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.12 3.48 5.14 -51.93 -0.27 3.21 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -30.63 353.22 -8.10 -38.73 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.91 Total: 5.76 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.42 Total: 2.02 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.23 Total: -47.18 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.16 Total: -20.89 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.63 -8.10 -38.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350757287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.895 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds