Wall clock time and date at job start Tue Mar 31 2020 07:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50705 * 119.99777 * 2 1 4 4 C 1.31005 * 120.00375 * 180.02562 * 2 1 3 5 5 C 1.50697 * 119.99671 * 354.87951 * 4 2 1 6 6 N 1.46503 * 109.47182 * 125.76321 * 5 4 2 7 7 C 1.34776 * 120.00119 * 179.97438 * 6 5 4 8 8 O 1.21352 * 119.99582 * 359.97438 * 7 6 5 9 9 C 1.49448 * 119.99923 * 180.02562 * 7 6 5 10 10 O 1.21350 * 119.99977 * 6.02168 * 9 7 6 11 11 N 1.34775 * 119.99708 * 186.01980 * 9 7 6 12 12 C 1.46918 * 120.63339 * 355.78447 * 11 9 7 13 13 C 1.53196 * 108.77390 * 126.41428 * 12 11 9 14 14 C 1.53030 * 109.33853 * 54.62039 * 13 12 11 15 15 C 1.53044 * 109.54129 * 298.68406 * 14 13 12 16 16 H 1.08997 * 109.49404 * 301.34953 * 15 14 13 17 17 C 1.50705 * 109.49707 * 181.28431 * 15 14 13 18 18 H 1.08001 * 119.99913 * 0.06659 * 17 15 14 19 19 C 1.37872 * 119.99731 * 180.33772 * 17 15 14 20 20 N 1.31517 * 120.00164 * 359.72799 * 19 17 15 21 21 Si 1.86796 * 120.00105 * 179.72375 * 19 17 15 22 22 H 1.48505 * 109.46997 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47247 * 120.00452 * 21 19 17 24 24 H 1.48500 * 109.47381 * 240.00278 * 21 19 17 25 25 C 1.46929 * 120.62664 * 175.81185 * 11 9 7 26 26 H 1.09001 * 109.47129 * 244.93626 * 1 2 3 27 27 H 1.09001 * 109.47484 * 4.93813 * 1 2 3 28 28 H 1.08999 * 109.46836 * 124.93731 * 1 2 3 29 29 H 1.09005 * 109.47171 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47083 * 299.99805 * 3 2 1 31 31 H 1.08993 * 109.47402 * 59.99974 * 3 2 1 32 32 H 1.07994 * 119.99827 * 174.88207 * 4 2 1 33 33 H 1.09007 * 109.47108 * 5.76201 * 5 4 2 34 34 H 1.09000 * 109.46980 * 245.76530 * 5 4 2 35 35 H 0.96995 * 119.99408 * 359.97438 * 6 5 4 36 36 H 1.09003 * 109.59307 * 246.20033 * 12 11 9 37 37 H 1.09006 * 109.58584 * 6.48734 * 12 11 9 38 38 H 1.08999 * 109.49746 * 174.58750 * 13 12 11 39 39 H 1.09000 * 109.49716 * 294.68500 * 13 12 11 40 40 H 1.09003 * 109.48930 * 178.64452 * 14 13 12 41 41 H 1.08998 * 109.43569 * 58.69296 * 14 13 12 42 42 H 0.96997 * 120.00388 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.58759 * 113.79835 * 25 11 9 44 44 H 1.08994 * 109.70543 * 353.44260 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1621 -1.1345 -0.0005 5 6 1.4131 -2.4370 0.1154 6 7 1.7815 -3.3131 -0.9996 7 6 1.2323 -4.5395 -1.1029 8 8 0.4330 -4.9183 -0.2721 9 6 1.6085 -5.4333 -2.2400 10 8 2.4872 -5.1009 -3.0081 11 7 0.9718 -6.6087 -2.4124 12 6 -0.0291 -7.0676 -1.4397 13 6 -1.3277 -7.3925 -2.1846 14 6 -1.0331 -8.3942 -3.3034 15 6 -0.0470 -7.7762 -4.2973 16 1 -0.4703 -6.8592 -4.7072 17 6 0.2181 -8.7515 -5.4152 18 1 -0.2689 -9.7155 -5.4176 19 6 1.0865 -8.4152 -6.4319 20 7 1.6794 -7.2413 -6.4290 21 14 1.4210 -9.6270 -7.8136 22 1 0.6357 -10.8666 -7.5857 23 1 1.0242 -9.0214 -9.1101 24 1 2.8688 -9.9562 -7.8436 25 6 1.2661 -7.4557 -3.5763 26 1 -0.3633 -0.4354 0.9309 27 1 -0.3634 1.0238 -0.0885 28 1 -0.3633 -0.5885 -0.8425 29 1 3.3321 1.1060 -0.0005 30 1 1.9971 1.8767 -0.8900 31 1 1.9971 1.8767 0.8899 32 1 3.2388 -1.1362 -0.0839 33 1 0.3408 -2.2434 0.0864 34 1 1.6696 -2.9210 1.0578 35 1 2.4206 -3.0103 -1.6634 36 1 0.3357 -7.9617 -0.9341 37 1 -0.2127 -6.2823 -0.7063 38 1 -2.0474 -7.8247 -1.4895 39 1 -1.7392 -6.4790 -2.6139 40 1 -1.9596 -8.6456 -3.8197 41 1 -0.5993 -9.2982 -2.8759 42 1 2.2906 -7.0048 -7.1441 43 1 1.7365 -8.3814 -3.2450 44 1 1.9361 -6.9279 -4.2549 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350757287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:22 Heat of formation + Delta-G solvation = -70.149189 kcal Electronic energy + Delta-G solvation = -23963.315083 eV Core-core repulsion = 20494.379835 eV Total energy + Delta-G solvation = -3468.935247 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.95645 -39.88601 -38.54294 -38.00596 -35.65047 -34.98077 -33.44962 -31.56909 -30.27048 -28.66789 -27.63297 -26.82964 -25.35408 -23.59995 -23.37551 -21.72482 -20.61566 -19.21445 -18.57823 -18.09072 -17.89826 -17.15148 -16.90195 -16.46527 -16.22912 -15.91536 -15.48597 -15.08324 -14.89881 -14.86904 -14.61507 -14.47574 -14.44373 -13.89952 -13.51888 -13.45088 -13.23084 -13.05774 -12.90477 -12.79102 -12.46980 -12.44819 -12.30431 -12.15894 -11.87986 -11.71652 -11.58980 -11.15853 -10.98826 -10.55709 -10.46401 -10.01866 -9.69257 -9.55264 -8.12544 -6.29064 0.35296 0.91803 1.40033 1.42155 1.54064 1.57242 2.15755 2.41272 2.65411 3.15828 3.32728 3.73607 4.00425 4.15721 4.19073 4.29215 4.34316 4.39803 4.55194 4.59201 4.68827 4.71522 4.78054 4.79507 4.82201 4.94110 4.96239 5.05647 5.12063 5.15411 5.19378 5.23329 5.27976 5.40093 5.53968 5.56738 5.67015 5.83584 5.90249 5.93628 6.01075 6.29524 6.44976 6.74468 6.83380 6.98508 7.40806 8.91607 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022239 B = 0.003391 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.722341 B = 8255.109459 C = 9007.682108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 C -0.121 4.121 4 C -0.204 4.204 5 C 0.145 3.855 6 N -0.683 5.683 7 C 0.520 3.480 8 O -0.519 6.519 9 C 0.484 3.516 10 O -0.560 6.560 11 N -0.573 5.573 12 C 0.045 3.955 13 C -0.122 4.122 14 C -0.107 4.107 15 C 0.039 3.961 16 H -0.010 1.010 17 C -0.534 4.534 18 H 0.062 0.938 19 C 0.010 3.990 20 N -0.915 5.915 21 Si 0.960 3.040 22 H -0.262 1.262 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.120 3.880 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.417 0.583 36 H 0.070 0.930 37 H 0.161 0.839 38 H 0.099 0.901 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.261 0.739 43 H 0.043 0.957 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 13.482 15.850 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.099 4.099 3 C -0.178 4.178 4 C -0.222 4.222 5 C 0.024 3.976 6 N -0.335 5.335 7 C 0.302 3.698 8 O -0.399 6.399 9 C 0.267 3.733 10 O -0.440 6.440 11 N -0.304 5.304 12 C -0.076 4.076 13 C -0.160 4.160 14 C -0.145 4.145 15 C 0.020 3.980 16 H 0.008 0.992 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.553 5.553 21 Si 0.785 3.215 22 H -0.186 1.186 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.002 4.002 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.143 0.857 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.254 0.746 36 H 0.088 0.912 37 H 0.177 0.823 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.602 13.497 15.954 20.959 hybrid contribution 0.778 -0.630 -1.597 1.885 sum -0.824 12.866 14.358 19.297 Atomic orbital electron populations 1.20982 0.91832 1.03477 1.02483 1.22007 0.96467 0.95575 0.95819 1.20951 0.99665 0.94032 1.03106 1.22628 1.00281 0.92223 1.07113 1.20725 1.00064 0.88128 0.88716 1.45907 1.44594 1.13700 1.29281 1.19954 0.81404 0.83197 0.85265 1.90212 1.34347 1.72689 1.42613 1.20489 0.83241 0.83295 0.86299 1.90731 1.32167 1.74192 1.46898 1.48484 1.38523 1.18350 1.25072 1.23465 0.87343 1.04343 0.92401 1.21863 0.97229 0.99016 0.97914 1.21564 0.98813 0.98045 0.96078 1.18909 0.91475 0.94790 0.92848 0.99200 1.21514 1.26487 1.02188 1.07095 0.91937 1.25889 0.95597 0.96867 1.00547 1.70058 1.29680 1.21879 1.33720 0.85474 0.77872 0.79311 0.78813 1.18633 1.20763 1.20724 1.21950 1.01081 0.92124 0.85020 0.90470 0.90487 0.92009 0.91472 0.90784 0.90029 0.85722 0.89952 0.89740 0.74632 0.91176 0.82300 0.88296 0.93421 0.92752 0.92525 0.92954 0.93903 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.54 71.23 0.61 -1.09 16 2 C -0.10 -1.36 6.05 -16.49 -0.10 -1.46 16 3 C -0.12 -1.25 10.04 71.24 0.72 -0.53 16 4 C -0.20 -3.23 9.23 25.64 0.24 -3.00 16 5 C 0.14 2.84 5.93 85.63 0.51 3.34 16 6 N -0.68 -17.70 5.54 -468.13 -2.59 -20.30 16 7 C 0.52 17.14 7.81 87.27 0.68 17.82 16 8 O -0.52 -17.01 13.01 -3.25 -0.04 -17.05 16 9 C 0.48 20.30 7.76 87.27 0.68 20.98 16 10 O -0.56 -26.98 15.92 -3.25 -0.05 -27.03 16 11 N -0.57 -24.71 2.97 -820.50 -2.44 -27.15 16 12 C 0.04 1.56 6.27 86.37 0.54 2.10 16 13 C -0.12 -4.18 6.08 30.67 0.19 -3.99 16 14 C -0.11 -4.40 5.11 30.62 0.16 -4.25 16 15 C 0.04 2.01 2.25 -11.46 -0.03 1.99 16 16 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 17 C -0.53 -29.67 8.57 25.60 0.22 -29.45 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 19 C 0.01 0.59 5.30 84.65 0.45 1.03 16 20 N -0.91 -54.94 11.38 21.45 0.24 -54.70 16 21 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 C 0.12 6.12 5.38 86.36 0.47 6.59 16 26 H 0.08 0.91 7.89 -2.39 -0.02 0.89 16 27 H 0.08 0.79 8.01 -2.39 -0.02 0.77 16 28 H 0.06 0.95 7.62 -2.39 -0.02 0.94 16 29 H 0.07 0.66 7.79 -2.38 -0.02 0.64 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.12 1.80 7.84 -2.91 -0.02 1.78 16 33 H 0.08 1.60 5.80 -2.38 -0.01 1.59 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.42 10.60 7.95 -92.71 -0.74 9.86 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.16 5.30 3.71 -85.75 -0.32 4.99 16 38 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.09 5.05 5.14 -2.39 -0.01 5.04 16 Total: -1.00 -67.84 353.22 2.42 -65.42 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.05 Total: 24.48 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 5.32 Total: 10.10 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -4.79 Total: -102.14 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -0.09 Total: -44.08 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -67.84 2.42 -65.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350757287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.725 kcal (2) G-P(sol) polarization free energy of solvation -67.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds