Wall clock time and date at job start Tue Mar 31 2020 07:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50695 * 120.00593 * 2 1 4 4 C 1.31008 * 119.99803 * 180.02562 * 2 1 3 5 5 C 1.50702 * 119.99867 * 353.13304 * 4 2 1 6 6 N 1.46491 * 109.47092 * 117.02983 * 5 4 2 7 7 C 1.34782 * 120.00150 * 179.97438 * 6 5 4 8 8 O 1.21344 * 119.99857 * 0.02562 * 7 6 5 9 9 C 1.49450 * 120.00038 * 180.02562 * 7 6 5 10 10 O 1.21347 * 120.00113 * 353.64041 * 9 7 6 11 11 N 1.34776 * 119.99912 * 173.63236 * 9 7 6 12 12 C 1.46933 * 120.63021 * 353.02775 * 11 9 7 13 13 C 1.53189 * 108.89299 * 233.55682 * 12 11 9 14 14 C 1.53083 * 109.29377 * 305.57897 * 13 12 11 15 15 C 1.53040 * 109.65642 * 61.15134 * 14 13 12 16 16 H 1.08995 * 109.49836 * 58.65577 * 15 14 13 17 17 C 1.50702 * 109.49393 * 178.74909 * 15 14 13 18 18 H 1.08005 * 119.99947 * 359.84180 * 17 15 14 19 19 C 1.37876 * 120.00345 * 179.83575 * 17 15 14 20 20 N 1.31516 * 119.99674 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00332 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47353 * 90.00438 * 21 19 17 23 23 H 1.48496 * 109.47004 * 210.00491 * 21 19 17 24 24 H 1.48499 * 109.47318 * 329.99992 * 21 19 17 25 25 C 1.46926 * 120.63091 * 173.04232 * 11 9 7 26 26 H 1.09001 * 109.47025 * 244.10306 * 1 2 3 27 27 H 1.09003 * 109.46949 * 4.09561 * 1 2 3 28 28 H 1.09002 * 109.47506 * 124.09413 * 1 2 3 29 29 H 1.09005 * 109.47298 * 270.00656 * 3 2 1 30 30 H 1.09003 * 109.47047 * 29.99947 * 3 2 1 31 31 H 1.08997 * 109.47712 * 149.99953 * 3 2 1 32 32 H 1.07995 * 119.99694 * 173.13434 * 4 2 1 33 33 H 1.09007 * 109.47196 * 357.03296 * 5 4 2 34 34 H 1.08991 * 109.47149 * 237.03428 * 5 4 2 35 35 H 0.96998 * 120.00301 * 0.02562 * 6 5 4 36 36 H 1.08997 * 109.58611 * 353.41055 * 12 11 9 37 37 H 1.09000 * 109.58289 * 113.69522 * 12 11 9 38 38 H 1.08993 * 109.50030 * 65.38166 * 13 12 11 39 39 H 1.08999 * 109.49642 * 185.48568 * 13 12 11 40 40 H 1.09003 * 109.34050 * 301.12860 * 14 13 12 41 41 H 1.09000 * 109.44210 * 181.24169 * 14 13 12 42 42 H 0.96997 * 120.00456 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.58790 * 246.16171 * 25 11 9 44 44 H 1.08992 * 109.58573 * 6.44681 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1346 -0.0005 5 6 1.4165 -2.4350 0.1550 6 7 1.5892 -3.2444 -1.0538 7 6 1.0080 -4.4573 -1.1415 8 8 0.3413 -4.8787 -0.2193 9 6 1.1846 -5.2832 -2.3744 10 8 1.7527 -4.8176 -3.3404 11 7 0.7131 -6.5452 -2.4134 12 6 0.1605 -7.1755 -1.2067 13 6 0.8745 -8.5106 -0.9731 14 6 0.7707 -9.3676 -2.2373 15 6 1.4527 -8.6490 -3.4038 16 1 2.4973 -8.4619 -3.1552 17 6 1.3753 -9.5093 -4.6388 18 1 0.8907 -10.4735 -4.5957 19 6 1.9230 -9.0654 -5.8237 20 7 2.5135 -7.8914 -5.8760 21 14 1.8264 -10.1314 -7.3546 22 1 0.5815 -9.8156 -8.0999 23 1 3.0030 -9.8627 -8.2198 24 1 1.8182 -11.5632 -6.9610 25 6 0.7422 -7.3169 -3.6634 26 1 -0.3633 -0.4488 0.9245 27 1 -0.3633 1.0251 -0.0734 28 1 -0.3634 -0.5761 -0.8510 29 1 2.4422 1.6197 -1.0277 30 1 1.6715 2.0647 0.5138 31 1 3.2130 1.1747 0.5138 32 1 3.2361 -1.1379 -0.1123 33 1 0.3566 -2.2304 0.3068 34 1 1.8085 -2.9780 1.0149 35 1 2.1224 -2.9078 -1.7909 36 1 0.3177 -6.5221 -0.3485 37 1 -0.9068 -7.3506 -1.3420 38 1 1.9245 -8.3268 -0.7459 39 1 0.4069 -9.0320 -0.1380 40 1 -0.2799 -9.5324 -2.4765 41 1 1.2590 -10.3270 -2.0663 42 1 2.8992 -7.5792 -6.7094 43 1 -0.2772 -7.5059 -4.0000 44 1 1.2809 -6.7557 -4.4268 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350757288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:26 Heat of formation + Delta-G solvation = -53.762192 kcal Electronic energy + Delta-G solvation = -23932.034100 eV Core-core repulsion = 20463.809447 eV Total energy + Delta-G solvation = -3468.224654 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.45461 -38.43829 -37.18589 -36.78018 -34.38232 -33.18051 -31.71354 -29.74735 -29.40760 -28.08815 -26.02977 -24.99811 -24.24162 -22.12201 -21.77757 -20.21331 -19.01856 -18.13039 -17.08226 -16.61599 -16.23070 -15.85134 -15.50119 -14.95490 -14.81380 -14.49805 -14.24424 -13.90256 -13.81426 -13.55261 -13.24039 -12.89931 -12.75428 -12.62097 -12.49121 -12.22461 -12.12342 -11.89245 -11.78425 -11.38439 -11.21698 -10.97147 -10.67627 -10.45113 -10.28363 -10.09075 -9.86111 -9.35344 -9.21009 -9.10135 -9.05592 -8.50994 -8.42726 -7.79854 -6.00221 -4.08866 1.64691 1.84023 2.90565 3.31002 3.38093 3.40734 3.67681 4.06203 4.42033 4.42823 4.58798 4.76271 4.94870 5.09553 5.20958 5.25083 5.29686 5.41938 5.51460 5.53481 5.63523 5.66836 5.68912 5.75025 5.88483 6.11305 6.26349 6.29234 6.38887 6.50372 6.59082 6.63138 6.74454 6.87077 7.00247 7.05882 7.20294 7.30445 7.60901 7.84540 7.96439 8.01051 8.19124 8.37087 8.61208 8.95156 9.56607 11.05041 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023886 B = 0.003331 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.962117 B = 8404.076565 C = 9276.484663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 C -0.121 4.121 4 C -0.192 4.192 5 C 0.146 3.854 6 N -0.701 5.701 7 C 0.509 3.491 8 O -0.520 6.520 9 C 0.493 3.507 10 O -0.522 6.522 11 N -0.568 5.568 12 C 0.067 3.933 13 C -0.133 4.133 14 C -0.113 4.113 15 C 0.041 3.959 16 H 0.030 0.970 17 C -0.519 4.519 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.881 5.881 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.108 3.892 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.414 0.586 36 H 0.130 0.870 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.263 0.737 43 H 0.048 0.952 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 14.443 13.028 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.103 4.103 3 C -0.177 4.177 4 C -0.210 4.210 5 C 0.023 3.977 6 N -0.354 5.354 7 C 0.291 3.709 8 O -0.397 6.397 9 C 0.274 3.726 10 O -0.399 6.399 11 N -0.300 5.300 12 C -0.056 4.056 13 C -0.171 4.171 14 C -0.150 4.150 15 C 0.022 3.978 16 H 0.048 0.952 17 C -0.558 4.558 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.519 5.519 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.012 4.012 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.250 0.750 36 H 0.147 0.853 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.719 14.495 13.033 19.681 hybrid contribution 0.231 -0.486 -1.228 1.340 sum -2.488 14.009 11.805 18.488 Atomic orbital electron populations 1.20961 0.92118 1.02659 1.02624 1.21779 0.96024 0.95116 0.97379 1.20904 0.99782 0.94617 1.02435 1.22664 1.00101 0.92991 1.05272 1.20509 1.00553 0.89030 0.87594 1.45884 1.52277 1.17173 1.20062 1.20784 0.79599 0.82279 0.88208 1.90425 1.39719 1.69225 1.40372 1.19815 0.81552 0.83590 0.87630 1.90771 1.41006 1.71432 1.36695 1.48438 1.56974 1.11461 1.13174 1.22780 0.97150 0.96071 0.89550 1.21958 1.00363 0.96072 0.98731 1.21666 1.00446 0.98084 0.94842 1.18957 0.95155 0.91041 0.92663 0.95212 1.21092 1.37478 1.03273 0.93951 0.92271 1.25065 0.94844 0.95150 0.99041 1.69885 1.36843 1.18260 1.26885 0.86572 0.77577 0.80759 0.82977 1.20650 1.21209 1.19926 1.22478 1.00361 0.94622 0.83727 0.91077 0.91817 0.91013 0.91100 0.91595 0.91597 0.86418 0.90429 0.90397 0.74982 0.85271 0.92283 0.92472 0.92115 0.93207 0.93072 0.92656 0.93379 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 8.54 36.00 0.31 -0.63 16 2 C -0.10 -0.80 6.05 -101.07 -0.61 -1.41 16 3 C -0.12 -0.75 9.96 36.00 0.36 -0.39 16 4 C -0.19 -1.68 9.21 -36.03 -0.33 -2.01 16 5 C 0.15 1.55 5.90 -5.20 -0.03 1.52 16 6 N -0.70 -9.39 5.54 -61.91 -0.34 -9.73 16 7 C 0.51 8.56 7.76 -11.58 -0.09 8.47 16 8 O -0.52 -9.01 13.13 5.50 0.07 -8.93 16 9 C 0.49 10.14 7.74 -11.59 -0.09 10.05 16 10 O -0.52 -12.14 15.92 5.50 0.09 -12.05 16 11 N -0.57 -12.06 2.97 -173.28 -0.52 -12.58 16 12 C 0.07 1.21 6.03 -3.71 -0.02 1.19 16 13 C -0.13 -2.37 6.09 -26.59 -0.16 -2.53 16 14 C -0.11 -2.34 5.10 -26.67 -0.14 -2.48 16 15 C 0.04 1.03 2.26 -91.65 -0.21 0.82 16 16 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 17 C -0.52 -14.14 8.56 -34.44 -0.29 -14.44 16 18 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 20 N -0.88 -25.54 11.39 55.43 0.63 -24.90 16 21 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 25 C 0.11 2.65 5.41 -3.71 -0.02 2.63 16 26 H 0.07 0.50 7.61 -51.93 -0.40 0.10 16 27 H 0.06 0.39 7.97 -51.93 -0.41 -0.02 16 28 H 0.07 0.60 7.91 -51.93 -0.41 0.19 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.07 0.38 8.06 -51.93 -0.42 -0.04 16 32 H 0.12 0.95 8.05 -52.49 -0.42 0.53 16 33 H 0.08 0.82 5.85 -51.93 -0.30 0.51 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.41 5.36 7.95 -40.82 -0.32 5.04 16 36 H 0.13 2.28 4.20 -55.40 -0.23 2.04 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.12 3.47 5.12 -51.93 -0.27 3.20 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -30.62 353.85 -8.13 -38.75 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.95 Total: 5.49 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.42 Total: 2.39 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.23 Total: -47.21 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: 0.16 Total: -20.98 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.62 -8.13 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350757288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.008 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds