Wall clock time and date at job start Tue Mar 31 2020 07:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50695 * 120.00593 * 2 1 4 4 C 1.31008 * 119.99803 * 180.02562 * 2 1 3 5 5 C 1.50702 * 119.99867 * 353.13304 * 4 2 1 6 6 N 1.46491 * 109.47092 * 117.02983 * 5 4 2 7 7 C 1.34782 * 120.00150 * 179.97438 * 6 5 4 8 8 O 1.21344 * 119.99857 * 0.02562 * 7 6 5 9 9 C 1.49450 * 120.00038 * 180.02562 * 7 6 5 10 10 O 1.21347 * 120.00113 * 353.64041 * 9 7 6 11 11 N 1.34776 * 119.99912 * 173.63236 * 9 7 6 12 12 C 1.46933 * 120.63021 * 353.02775 * 11 9 7 13 13 C 1.53189 * 108.89299 * 233.55682 * 12 11 9 14 14 C 1.53083 * 109.29377 * 305.57897 * 13 12 11 15 15 C 1.53040 * 109.65642 * 61.15134 * 14 13 12 16 16 H 1.08995 * 109.49836 * 58.65577 * 15 14 13 17 17 C 1.50702 * 109.49393 * 178.74909 * 15 14 13 18 18 H 1.08005 * 119.99947 * 359.84180 * 17 15 14 19 19 C 1.37876 * 120.00345 * 179.83575 * 17 15 14 20 20 N 1.31516 * 119.99674 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00332 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47353 * 90.00438 * 21 19 17 23 23 H 1.48496 * 109.47004 * 210.00491 * 21 19 17 24 24 H 1.48499 * 109.47318 * 329.99992 * 21 19 17 25 25 C 1.46926 * 120.63091 * 173.04232 * 11 9 7 26 26 H 1.09001 * 109.47025 * 244.10306 * 1 2 3 27 27 H 1.09003 * 109.46949 * 4.09561 * 1 2 3 28 28 H 1.09002 * 109.47506 * 124.09413 * 1 2 3 29 29 H 1.09005 * 109.47298 * 270.00656 * 3 2 1 30 30 H 1.09003 * 109.47047 * 29.99947 * 3 2 1 31 31 H 1.08997 * 109.47712 * 149.99953 * 3 2 1 32 32 H 1.07995 * 119.99694 * 173.13434 * 4 2 1 33 33 H 1.09007 * 109.47196 * 357.03296 * 5 4 2 34 34 H 1.08991 * 109.47149 * 237.03428 * 5 4 2 35 35 H 0.96998 * 120.00301 * 0.02562 * 6 5 4 36 36 H 1.08997 * 109.58611 * 353.41055 * 12 11 9 37 37 H 1.09000 * 109.58289 * 113.69522 * 12 11 9 38 38 H 1.08993 * 109.50030 * 65.38166 * 13 12 11 39 39 H 1.08999 * 109.49642 * 185.48568 * 13 12 11 40 40 H 1.09003 * 109.34050 * 301.12860 * 14 13 12 41 41 H 1.09000 * 109.44210 * 181.24169 * 14 13 12 42 42 H 0.96997 * 120.00456 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.58790 * 246.16171 * 25 11 9 44 44 H 1.08992 * 109.58573 * 6.44681 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1346 -0.0005 5 6 1.4165 -2.4350 0.1550 6 7 1.5892 -3.2444 -1.0538 7 6 1.0080 -4.4573 -1.1415 8 8 0.3413 -4.8787 -0.2193 9 6 1.1846 -5.2832 -2.3744 10 8 1.7527 -4.8176 -3.3404 11 7 0.7131 -6.5452 -2.4134 12 6 0.1605 -7.1755 -1.2067 13 6 0.8745 -8.5106 -0.9731 14 6 0.7707 -9.3676 -2.2373 15 6 1.4527 -8.6490 -3.4038 16 1 2.4973 -8.4619 -3.1552 17 6 1.3753 -9.5093 -4.6388 18 1 0.8907 -10.4735 -4.5957 19 6 1.9230 -9.0654 -5.8237 20 7 2.5135 -7.8914 -5.8760 21 14 1.8264 -10.1314 -7.3546 22 1 0.5815 -9.8156 -8.0999 23 1 3.0030 -9.8627 -8.2198 24 1 1.8182 -11.5632 -6.9610 25 6 0.7422 -7.3169 -3.6634 26 1 -0.3633 -0.4488 0.9245 27 1 -0.3633 1.0251 -0.0734 28 1 -0.3634 -0.5761 -0.8510 29 1 2.4422 1.6197 -1.0277 30 1 1.6715 2.0647 0.5138 31 1 3.2130 1.1747 0.5138 32 1 3.2361 -1.1379 -0.1123 33 1 0.3566 -2.2304 0.3068 34 1 1.8085 -2.9780 1.0149 35 1 2.1224 -2.9078 -1.7909 36 1 0.3177 -6.5221 -0.3485 37 1 -0.9068 -7.3506 -1.3420 38 1 1.9245 -8.3268 -0.7459 39 1 0.4069 -9.0320 -0.1380 40 1 -0.2799 -9.5324 -2.4765 41 1 1.2590 -10.3270 -2.0663 42 1 2.8992 -7.5792 -6.7094 43 1 -0.2772 -7.5059 -4.0000 44 1 1.2809 -6.7557 -4.4268 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350757288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:25 Heat of formation + Delta-G solvation = -73.239555 kcal Electronic energy + Delta-G solvation = -23932.878702 eV Core-core repulsion = 20463.809447 eV Total energy + Delta-G solvation = -3469.069256 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.92571 -39.88765 -38.51884 -38.00647 -35.61185 -34.97407 -33.45107 -31.58553 -30.26608 -28.66321 -27.62714 -26.82104 -25.35705 -23.60708 -23.37519 -21.65598 -20.61989 -19.18700 -18.55396 -18.11052 -17.91150 -17.14517 -16.90797 -16.47138 -16.13807 -15.95237 -15.46782 -15.01600 -14.90358 -14.86204 -14.63651 -14.45628 -14.40170 -13.94141 -13.48804 -13.44100 -13.27375 -13.03372 -12.86802 -12.77936 -12.50290 -12.46322 -12.28966 -12.16313 -11.88577 -11.72976 -11.61595 -11.13932 -10.98775 -10.55140 -10.37769 -10.19360 -9.68998 -9.54797 -8.11218 -6.28212 0.36407 0.88422 1.41728 1.42369 1.53193 1.59412 2.15031 2.41894 2.66722 3.16740 3.35761 3.73896 4.00275 4.13352 4.17940 4.26360 4.33791 4.39176 4.55879 4.59368 4.68478 4.71316 4.80215 4.81217 4.83036 4.92362 4.96200 5.06034 5.11847 5.14795 5.18750 5.23194 5.26963 5.35868 5.49764 5.57217 5.66909 5.84366 5.88921 5.94187 6.02114 6.30291 6.43957 6.73585 6.83851 6.99186 7.41619 8.92511 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023886 B = 0.003331 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.962117 B = 8404.076565 C = 9276.484663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 C -0.122 4.122 4 C -0.206 4.206 5 C 0.146 3.854 6 N -0.684 5.684 7 C 0.518 3.482 8 O -0.523 6.523 9 C 0.484 3.516 10 O -0.558 6.558 11 N -0.576 5.576 12 C 0.066 3.934 13 C -0.125 4.125 14 C -0.107 4.107 15 C 0.039 3.961 16 H -0.011 1.011 17 C -0.536 4.536 18 H 0.063 0.937 19 C 0.011 3.989 20 N -0.914 5.914 21 Si 0.959 3.041 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.265 1.265 25 C 0.120 3.880 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.416 0.584 36 H 0.143 0.857 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.261 0.739 43 H 0.045 0.955 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 14.882 14.557 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.094 4.094 3 C -0.179 4.179 4 C -0.225 4.225 5 C 0.025 3.975 6 N -0.336 5.336 7 C 0.299 3.701 8 O -0.402 6.402 9 C 0.267 3.733 10 O -0.438 6.438 11 N -0.307 5.307 12 C -0.054 4.054 13 C -0.163 4.163 14 C -0.144 4.144 15 C 0.020 3.980 16 H 0.007 0.993 17 C -0.574 4.574 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.552 5.552 21 Si 0.785 3.215 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.189 1.189 25 C -0.001 4.001 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.253 0.747 36 H 0.159 0.841 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.638 14.948 14.606 21.213 hybrid contribution 0.520 -0.530 -1.674 1.831 sum -3.118 14.418 12.932 19.617 Atomic orbital electron populations 1.21013 0.91864 1.03493 1.02382 1.22048 0.96418 0.95625 0.95337 1.20959 1.00076 0.93904 1.02913 1.22588 1.00366 0.92256 1.07249 1.20702 1.01222 0.89458 0.86147 1.45933 1.50685 1.15964 1.21044 1.19940 0.80489 0.82996 0.86643 1.90405 1.40383 1.69589 1.39835 1.20553 0.80464 0.83610 0.88703 1.90743 1.42419 1.72163 1.38454 1.48472 1.57291 1.11861 1.13084 1.23012 0.97764 0.96260 0.88397 1.21931 1.00347 0.95630 0.98426 1.21562 1.00196 0.98210 0.94477 1.18896 0.93397 0.91734 0.93991 0.99257 1.21485 1.37240 1.03685 0.94999 0.91918 1.25891 0.94511 0.96260 1.02226 1.70065 1.37813 1.19958 1.27405 0.85531 0.77543 0.79352 0.79098 1.19987 1.21225 1.18883 1.21952 0.99221 0.94306 0.84638 0.90528 0.90394 0.92137 0.90752 0.90352 0.91011 0.85774 0.90000 0.90024 0.74716 0.84068 0.90910 0.93350 0.88069 0.92411 0.92725 0.92979 0.93707 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.54 71.23 0.61 -1.09 16 2 C -0.09 -1.29 6.05 -16.50 -0.10 -1.39 16 3 C -0.12 -1.23 9.96 71.23 0.71 -0.52 16 4 C -0.21 -3.27 9.21 25.64 0.24 -3.04 16 5 C 0.15 2.88 5.90 85.64 0.51 3.38 16 6 N -0.68 -17.81 5.54 -468.16 -2.59 -20.41 16 7 C 0.52 17.11 7.76 87.27 0.68 17.79 16 8 O -0.52 -17.29 13.13 -3.23 -0.04 -17.33 16 9 C 0.48 20.31 7.74 87.27 0.68 20.98 16 10 O -0.56 -27.07 15.92 -3.24 -0.05 -27.12 16 11 N -0.58 -24.73 2.97 -820.49 -2.44 -27.17 16 12 C 0.07 2.31 6.03 86.36 0.52 2.83 16 13 C -0.13 -4.23 6.09 30.69 0.19 -4.04 16 14 C -0.11 -4.35 5.10 30.64 0.16 -4.19 16 15 C 0.04 2.01 2.26 -11.46 -0.03 1.99 16 16 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 17 C -0.54 -29.68 8.56 25.60 0.22 -29.46 16 18 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 19 C 0.01 0.60 5.30 84.65 0.45 1.05 16 20 N -0.91 -54.99 11.39 21.45 0.24 -54.75 16 21 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 25 C 0.12 6.12 5.41 86.36 0.47 6.58 16 26 H 0.08 0.92 7.61 -2.39 -0.02 0.90 16 27 H 0.08 0.78 7.97 -2.39 -0.02 0.76 16 28 H 0.06 0.94 7.91 -2.39 -0.02 0.92 16 29 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 31 H 0.07 0.66 8.06 -2.39 -0.02 0.64 16 32 H 0.12 1.81 8.05 -2.91 -0.02 1.79 16 33 H 0.08 1.58 5.85 -2.38 -0.01 1.57 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.42 10.67 7.95 -92.71 -0.74 9.94 16 36 H 0.14 4.68 4.20 -57.30 -0.24 4.44 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.26 15.08 8.31 -92.71 -0.77 14.30 16 43 H 0.04 2.24 8.14 -2.39 -0.02 2.23 16 44 H 0.09 5.04 5.12 -2.39 -0.01 5.02 16 Total: -1.00 -67.99 353.85 2.46 -65.53 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.03 Total: 24.20 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 5.29 Total: 10.88 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -4.79 Total: -102.32 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.09 Total: -44.45 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -67.99 2.46 -65.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350757288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.707 kcal (2) G-P(sol) polarization free energy of solvation -67.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds