Wall clock time and date at job start Tue Mar 31 2020 07:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42891 * 109.46285 * 83.52531 * 3 2 1 5 5 C 1.53045 * 109.45455 * 203.49835 * 3 2 1 6 6 C 1.53187 * 109.31632 * 58.64023 * 5 3 2 7 7 N 1.46924 * 108.77397 * 54.63159 * 6 5 3 8 8 C 1.34782 * 120.62907 * 126.36901 * 7 6 5 9 9 O 1.21586 * 119.99991 * 5.01686 * 8 7 6 10 10 N 1.34770 * 120.00108 * 184.74310 * 8 7 6 11 11 C 1.46507 * 120.00136 * 175.19804 * 10 8 7 12 12 C 1.53000 * 109.46919 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47196 * 299.99976 * 12 11 10 14 14 C 1.52993 * 109.47169 * 60.00233 * 12 11 10 15 15 C 1.50702 * 109.46609 * 180.02562 * 12 11 10 16 16 H 1.07993 * 120.00561 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99611 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00380 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99685 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47215 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47213 * 119.99961 * 19 17 15 22 22 H 1.48498 * 109.47002 * 239.99620 * 19 17 15 23 23 C 1.46920 * 118.74344 * 306.64288 * 7 6 5 24 24 C 1.52768 * 109.00589 * 53.30987 * 23 7 6 25 25 H 4.38422 * 5.44578 * 180.02562 * 4 1 2 26 26 H 0.96702 * 113.99717 * 299.97250 * 4 3 2 27 27 H 1.09002 * 109.49577 * 298.68529 * 5 3 2 28 28 H 1.09000 * 109.51910 * 178.60988 * 5 3 2 29 29 H 1.08999 * 109.58742 * 294.84756 * 6 5 3 30 30 H 1.09003 * 109.70440 * 174.49036 * 6 5 3 31 31 H 0.96996 * 120.00057 * 355.19588 * 10 8 7 32 32 H 1.08997 * 109.47191 * 300.00008 * 11 10 8 33 33 H 1.09005 * 109.46626 * 59.99978 * 11 10 8 34 34 H 1.08990 * 109.46925 * 60.00509 * 13 12 11 35 35 H 1.09007 * 109.46718 * 180.02562 * 13 12 11 36 36 H 1.08998 * 109.47159 * 299.99941 * 13 12 11 37 37 H 1.09006 * 109.47336 * 59.99708 * 14 12 11 38 38 H 1.08999 * 109.47403 * 179.97438 * 14 12 11 39 39 H 1.08999 * 109.47286 * 300.00021 * 14 12 11 40 40 H 0.97004 * 120.00520 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.59142 * 173.13880 * 23 7 6 42 42 H 1.08997 * 109.59044 * 293.57211 * 23 7 6 43 43 H 1.09001 * 109.56510 * 185.55393 * 24 23 7 44 44 H 1.08997 * 109.38804 * 65.51568 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 -0.1511 -1.3387 5 6 3.1552 1.3243 0.5754 6 6 2.6145 1.4998 1.9979 7 7 2.9777 0.3176 2.7910 8 6 3.6313 0.4507 3.9622 9 8 3.8454 1.5580 4.4165 10 7 4.0427 -0.6437 4.6325 11 6 4.8440 -0.4986 5.8504 12 6 5.1753 -1.8832 6.4108 13 6 3.8776 -2.6243 6.7394 14 6 5.9674 -2.6781 5.3709 15 6 5.9990 -1.7339 7.6640 16 1 6.2604 -0.7500 8.0243 17 6 6.4197 -2.8536 8.3498 18 7 6.1019 -4.0518 7.9107 19 14 7.4414 -2.6685 9.9027 20 1 7.6613 -1.2267 10.1816 21 1 6.7237 -3.2902 11.0444 22 1 8.7518 -3.3417 9.7162 23 6 2.6203 -1.0129 2.2803 24 6 3.1561 -1.1599 0.8573 25 1 -1.0500 0.0002 -0.0001 26 1 2.8375 -0.9700 -1.7669 27 1 2.8109 2.1488 -0.0490 28 1 4.2449 1.3161 0.5988 29 1 1.5295 1.5996 1.9667 30 1 3.0506 2.3909 2.4495 31 1 3.8082 -1.5274 4.3087 32 1 5.7682 0.0297 5.6165 33 1 4.2794 0.0674 6.5915 34 1 3.2816 -2.7323 5.8333 35 1 4.1138 -3.6106 7.1390 36 1 3.3134 -2.0580 7.4803 37 1 6.8918 -2.1502 5.1369 38 1 6.2038 -3.6644 5.7703 39 1 5.3712 -2.7861 4.4648 40 1 6.3976 -4.8395 8.3934 41 1 3.0624 -1.7795 2.9166 42 1 1.5359 -1.1222 2.2726 43 1 2.8125 -2.1036 0.4336 44 1 4.2458 -1.1457 0.8776 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351187650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:12 Heat of formation + Delta-G solvation = -20.064246 kcal Electronic energy + Delta-G solvation = -24509.346487 eV Core-core repulsion = 21042.583086 eV Total energy + Delta-G solvation = -3466.763401 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.50010 -38.78625 -36.56039 -35.70523 -33.52392 -33.02889 -31.56068 -31.10898 -30.41851 -25.89184 -25.72817 -25.31598 -24.38873 -23.48903 -21.97927 -19.91238 -18.92176 -18.48270 -18.14169 -16.65474 -16.05945 -15.72320 -15.43702 -15.25479 -15.02975 -14.62514 -14.21680 -13.99585 -13.62654 -13.32581 -12.83703 -12.76465 -12.52828 -12.16027 -12.14356 -11.82015 -11.51015 -11.38379 -11.28650 -11.18983 -10.89318 -10.87956 -10.81209 -10.65090 -10.38654 -10.24499 -10.17307 -9.72568 -9.63123 -9.29753 -8.78096 -8.73175 -8.40590 -8.14643 -6.01916 -4.11578 2.41568 2.48201 2.88978 3.27700 3.36372 3.41536 3.54831 3.88849 3.93881 4.21369 4.39910 4.47997 4.58774 4.80975 5.07500 5.20482 5.23941 5.25102 5.43801 5.51077 5.56512 5.62245 5.77731 5.81701 5.99921 6.20230 6.37460 6.50192 6.56519 6.80214 6.81628 6.91509 7.03355 7.09618 7.22454 7.24024 7.25838 7.38913 7.55796 7.70307 8.01147 8.12466 8.36814 8.42176 8.88399 9.01332 9.54246 10.99581 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030919 B = 0.003372 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.384600 B = 8301.069114 C = 8572.562212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.212 4.212 3 C 0.247 3.753 4 O -0.547 6.547 5 C -0.117 4.117 6 C 0.135 3.865 7 N -0.635 5.635 8 C 0.703 3.297 9 O -0.596 6.596 10 N -0.733 5.733 11 C 0.149 3.851 12 C 0.055 3.945 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.504 4.504 16 H 0.059 0.941 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.115 3.885 24 C -0.155 4.155 25 H 0.218 0.782 26 H 0.380 0.620 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.393 0.607 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.004 0.996 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.085 0.915 39 H 0.004 0.996 40 H 0.259 0.741 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.664 3.116 -16.724 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.212 4.212 3 C 0.206 3.794 4 O -0.353 6.353 5 C -0.155 4.155 6 C 0.011 3.989 7 N -0.374 5.374 8 C 0.404 3.596 9 O -0.475 6.475 10 N -0.389 5.389 11 C 0.026 3.974 12 C 0.054 3.946 13 C -0.187 4.187 14 C -0.186 4.186 15 C -0.542 4.542 16 H 0.077 0.923 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.009 4.009 24 C -0.194 4.194 25 H 0.235 0.765 26 H 0.228 0.772 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.230 0.770 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.023 0.977 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.023 0.977 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.149 4.312 -16.154 19.059 hybrid contribution -0.136 -1.076 0.457 1.176 sum -9.284 3.236 -15.697 18.522 Atomic orbital electron populations 1.25036 0.95923 1.00024 0.98722 1.23794 0.94964 1.00978 1.01478 1.18033 0.81892 0.96554 0.82892 1.86629 1.76057 1.45976 1.26680 1.21913 1.02446 0.95061 0.96115 1.21347 0.99522 0.89279 0.88720 1.47258 1.62009 1.06505 1.21648 1.15961 0.78309 0.85266 0.80047 1.90871 1.63089 1.24798 1.68693 1.45688 1.57127 1.06954 1.29164 1.21605 0.92655 1.00294 0.82852 1.18373 0.93473 0.88527 0.94181 1.21814 0.96111 1.03736 0.97015 1.21812 0.97750 1.03744 0.95340 1.21027 1.32326 0.92920 1.07975 0.92324 1.24878 0.95927 0.95240 0.97488 1.69811 1.45961 0.97381 1.39358 0.86516 0.79944 0.78288 0.83145 1.19733 1.21086 1.21088 1.21435 1.00217 0.85177 0.94028 1.22543 1.02958 0.98055 0.95853 0.76502 0.77221 0.89733 0.89630 0.91834 0.88012 0.77000 0.92981 0.92854 0.97738 0.89626 0.95409 0.95422 0.89628 0.97734 0.93098 0.89595 0.91295 0.90011 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 19.25 29.55 0.57 -0.93 16 2 C -0.21 -2.05 9.68 -37.12 -0.36 -2.40 16 3 C 0.25 2.42 1.09 -93.36 -0.10 2.32 16 4 O -0.55 -5.16 12.95 -35.23 -0.46 -5.62 16 5 C -0.12 -1.25 5.25 -26.61 -0.14 -1.39 16 6 C 0.13 1.67 6.07 -3.71 -0.02 1.64 16 7 N -0.64 -8.95 2.98 -178.77 -0.53 -9.48 16 8 C 0.70 12.90 8.30 -86.92 -0.72 12.18 16 9 O -0.60 -13.09 15.78 5.29 0.08 -13.01 16 10 N -0.73 -13.47 4.87 -65.22 -0.32 -13.79 16 11 C 0.15 3.22 4.51 -4.04 -0.02 3.20 16 12 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 13 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 14 C -0.13 -2.88 8.08 37.15 0.30 -2.58 16 15 C -0.50 -13.20 8.01 -34.44 -0.28 -13.47 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 18 N -0.89 -23.47 9.35 55.43 0.52 -22.95 16 19 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.12 1.29 6.06 -3.93 -0.02 1.27 16 24 C -0.16 -1.46 5.21 -26.83 -0.14 -1.60 16 25 H 0.22 1.10 7.80 -54.09 -0.42 0.68 16 26 H 0.38 2.15 9.03 45.56 0.41 2.56 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16 30 H 0.10 1.40 7.03 -51.93 -0.37 1.03 16 31 H 0.39 6.51 3.62 -40.82 -0.15 6.36 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 35 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 39 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 40 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 41 H 0.09 0.97 5.57 -51.93 -0.29 0.68 16 42 H 0.07 0.72 7.38 -51.93 -0.38 0.34 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 346.88 15.07 5.23 5.23 Total: -1.00 -30.62 346.88 -7.15 -37.76 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.85 Total: 7.72 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.80 Total: -1.53 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.33 Total: -46.23 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.37 Total: -18.63 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.62 -7.15 -37.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351187650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.698 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds