Wall clock time and date at job start Tue Mar 31 2020 07:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42891 * 109.46285 * 83.52531 * 3 2 1 5 5 C 1.53045 * 109.45455 * 203.49835 * 3 2 1 6 6 C 1.53187 * 109.31632 * 58.64023 * 5 3 2 7 7 N 1.46924 * 108.77397 * 54.63159 * 6 5 3 8 8 C 1.34782 * 120.62907 * 126.36901 * 7 6 5 9 9 O 1.21586 * 119.99991 * 5.01686 * 8 7 6 10 10 N 1.34770 * 120.00108 * 184.74310 * 8 7 6 11 11 C 1.46507 * 120.00136 * 175.19804 * 10 8 7 12 12 C 1.53000 * 109.46919 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47196 * 299.99976 * 12 11 10 14 14 C 1.52993 * 109.47169 * 60.00233 * 12 11 10 15 15 C 1.50702 * 109.46609 * 180.02562 * 12 11 10 16 16 H 1.07993 * 120.00561 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99611 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00380 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99685 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47215 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47213 * 119.99961 * 19 17 15 22 22 H 1.48498 * 109.47002 * 239.99620 * 19 17 15 23 23 C 1.46920 * 118.74344 * 306.64288 * 7 6 5 24 24 C 1.52768 * 109.00589 * 53.30987 * 23 7 6 25 25 H 4.38422 * 5.44578 * 180.02562 * 4 1 2 26 26 H 0.96702 * 113.99717 * 299.97250 * 4 3 2 27 27 H 1.09002 * 109.49577 * 298.68529 * 5 3 2 28 28 H 1.09000 * 109.51910 * 178.60988 * 5 3 2 29 29 H 1.08999 * 109.58742 * 294.84756 * 6 5 3 30 30 H 1.09003 * 109.70440 * 174.49036 * 6 5 3 31 31 H 0.96996 * 120.00057 * 355.19588 * 10 8 7 32 32 H 1.08997 * 109.47191 * 300.00008 * 11 10 8 33 33 H 1.09005 * 109.46626 * 59.99978 * 11 10 8 34 34 H 1.08990 * 109.46925 * 60.00509 * 13 12 11 35 35 H 1.09007 * 109.46718 * 180.02562 * 13 12 11 36 36 H 1.08998 * 109.47159 * 299.99941 * 13 12 11 37 37 H 1.09006 * 109.47336 * 59.99708 * 14 12 11 38 38 H 1.08999 * 109.47403 * 179.97438 * 14 12 11 39 39 H 1.08999 * 109.47286 * 300.00021 * 14 12 11 40 40 H 0.97004 * 120.00520 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.59142 * 173.13880 * 23 7 6 42 42 H 1.08997 * 109.59044 * 293.57211 * 23 7 6 43 43 H 1.09001 * 109.56510 * 185.55393 * 24 23 7 44 44 H 1.08997 * 109.38804 * 65.51568 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 -0.1511 -1.3387 5 6 3.1552 1.3243 0.5754 6 6 2.6145 1.4998 1.9979 7 7 2.9777 0.3176 2.7910 8 6 3.6313 0.4507 3.9622 9 8 3.8454 1.5580 4.4165 10 7 4.0427 -0.6437 4.6325 11 6 4.8440 -0.4986 5.8504 12 6 5.1753 -1.8832 6.4108 13 6 3.8776 -2.6243 6.7394 14 6 5.9674 -2.6781 5.3709 15 6 5.9990 -1.7339 7.6640 16 1 6.2604 -0.7500 8.0243 17 6 6.4197 -2.8536 8.3498 18 7 6.1019 -4.0518 7.9107 19 14 7.4414 -2.6685 9.9027 20 1 7.6613 -1.2267 10.1816 21 1 6.7237 -3.2902 11.0444 22 1 8.7518 -3.3417 9.7162 23 6 2.6203 -1.0129 2.2803 24 6 3.1561 -1.1599 0.8573 25 1 -1.0500 0.0002 -0.0001 26 1 2.8375 -0.9700 -1.7669 27 1 2.8109 2.1488 -0.0490 28 1 4.2449 1.3161 0.5988 29 1 1.5295 1.5996 1.9667 30 1 3.0506 2.3909 2.4495 31 1 3.8082 -1.5274 4.3087 32 1 5.7682 0.0297 5.6165 33 1 4.2794 0.0674 6.5915 34 1 3.2816 -2.7323 5.8333 35 1 4.1138 -3.6106 7.1390 36 1 3.3134 -2.0580 7.4803 37 1 6.8918 -2.1502 5.1369 38 1 6.2038 -3.6644 5.7703 39 1 5.3712 -2.7861 4.4648 40 1 6.3976 -4.8395 8.3934 41 1 3.0624 -1.7795 2.9166 42 1 1.5359 -1.1222 2.2726 43 1 2.8125 -2.1036 0.4336 44 1 4.2458 -1.1457 0.8776 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351187650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:12 Heat of formation + Delta-G solvation = -40.453132 kcal Electronic energy + Delta-G solvation = -24510.230615 eV Core-core repulsion = 21042.583086 eV Total energy + Delta-G solvation = -3467.647530 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67027 -39.89047 -38.20940 -36.81313 -35.12329 -33.91357 -32.93150 -32.07113 -31.73831 -27.56035 -27.52356 -27.00838 -25.65817 -24.43881 -22.92849 -21.16002 -20.64125 -19.59291 -19.16951 -17.83887 -17.34291 -17.22429 -16.69010 -16.64655 -16.04644 -15.80897 -15.41329 -15.30188 -15.05007 -14.77539 -14.36830 -14.17730 -13.95312 -13.39767 -13.20712 -13.10223 -13.03628 -12.70745 -12.66710 -12.56520 -12.38172 -12.24593 -12.12478 -12.05410 -11.61237 -11.49588 -11.47772 -11.33948 -11.13398 -10.87392 -10.69388 -10.39518 -10.14526 -9.51403 -8.01464 -6.16724 1.42329 1.46525 1.55533 1.64798 1.77577 1.83175 2.13102 2.46751 2.97863 3.20713 3.22321 3.27115 3.63093 3.75292 3.94588 4.21124 4.34927 4.38519 4.44254 4.53933 4.62122 4.67216 4.71902 4.75389 4.83478 4.94166 4.99780 5.01399 5.05543 5.11096 5.20375 5.22210 5.38473 5.50045 5.61997 5.67773 5.68718 5.91751 6.15779 6.22327 6.44764 6.63426 6.72083 6.87247 6.99157 7.50909 7.56591 8.97726 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030919 B = 0.003372 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.384600 B = 8301.069114 C = 8572.562212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.245 4.245 3 C 0.251 3.749 4 O -0.559 6.559 5 C -0.114 4.114 6 C 0.136 3.864 7 N -0.627 5.627 8 C 0.699 3.301 9 O -0.637 6.637 10 N -0.726 5.726 11 C 0.166 3.834 12 C 0.051 3.949 13 C -0.118 4.118 14 C -0.118 4.118 15 C -0.528 4.528 16 H 0.044 0.956 17 C 0.029 3.971 18 N -0.898 5.898 19 Si 0.945 3.055 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.111 3.889 24 C -0.150 4.150 25 H 0.246 0.754 26 H 0.396 0.604 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.403 0.597 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.064 0.936 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.260 0.740 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.010 2.287 -18.295 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.245 4.245 3 C 0.210 3.790 4 O -0.367 6.367 5 C -0.152 4.152 6 C 0.013 3.987 7 N -0.364 5.364 8 C 0.401 3.599 9 O -0.520 6.520 10 N -0.383 5.383 11 C 0.042 3.958 12 C 0.051 3.949 13 C -0.176 4.176 14 C -0.175 4.175 15 C -0.566 4.566 16 H 0.062 0.938 17 C -0.170 4.170 18 N -0.537 5.537 19 Si 0.772 3.228 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.012 4.012 24 C -0.188 4.188 25 H 0.262 0.738 26 H 0.247 0.753 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.243 0.757 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.127 0.873 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.524 3.442 -17.782 20.947 hybrid contribution 0.212 -0.802 0.866 1.199 sum -10.312 2.640 -16.915 19.986 Atomic orbital electron populations 1.25773 0.96676 0.98344 0.97180 1.23850 0.95216 1.02530 1.02952 1.17834 0.82360 0.95685 0.83091 1.86587 1.76323 1.47337 1.26491 1.21830 1.01696 0.96559 0.95115 1.21414 1.00155 0.87932 0.89219 1.47290 1.60488 1.08468 1.20190 1.16095 0.78459 0.84382 0.80989 1.90842 1.64755 1.26280 1.70081 1.45390 1.56940 1.07684 1.28328 1.21152 0.92090 0.98912 0.83645 1.18370 0.93604 0.89408 0.93557 1.21649 0.95951 1.01993 0.98010 1.21641 0.97749 1.01968 0.96182 1.21287 1.33336 0.92439 1.09569 0.93778 1.25429 0.96800 0.95121 0.99687 1.69904 1.46212 0.97595 1.39986 0.85710 0.78793 0.77870 0.80444 1.20099 1.20720 1.20702 1.21669 1.01213 0.83286 0.95002 1.22504 1.02324 0.99352 0.94615 0.73811 0.75315 0.88833 0.90754 0.90523 0.89956 0.75735 0.94620 0.94713 0.94717 0.91759 0.96393 0.96322 0.91793 0.94646 0.93020 0.89550 0.89828 0.87349 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 19.25 74.32 1.43 -0.71 16 2 C -0.25 -4.02 9.68 31.13 0.30 -3.72 16 3 C 0.25 4.36 1.09 -12.57 -0.01 4.35 16 4 O -0.56 -9.28 12.95 -148.98 -1.93 -11.21 16 5 C -0.11 -2.30 5.25 30.67 0.16 -2.14 16 6 C 0.14 3.24 6.07 86.36 0.52 3.76 16 7 N -0.63 -16.94 2.98 -837.76 -2.49 -19.43 16 8 C 0.70 25.49 8.30 179.05 1.49 26.98 16 9 O -0.64 -28.55 15.78 -3.99 -0.06 -28.61 16 10 N -0.73 -26.18 4.87 -478.52 -2.33 -28.51 16 11 C 0.17 7.28 4.51 86.38 0.39 7.67 16 12 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 13 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 14 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 15 C -0.53 -28.02 8.01 25.60 0.21 -27.81 16 16 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 17 C 0.03 1.54 5.15 84.66 0.44 1.98 16 18 N -0.90 -47.47 9.35 21.45 0.20 -47.27 16 19 Si 0.94 42.60 29.54 68.60 2.03 44.63 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 C 0.11 2.21 6.06 86.22 0.52 2.73 16 24 C -0.15 -2.43 5.21 30.53 0.16 -2.27 16 25 H 0.25 1.46 7.80 -4.42 -0.03 1.43 16 26 H 0.40 3.43 9.03 -74.06 -0.67 2.76 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.64 7.38 -2.39 -0.02 1.62 16 30 H 0.08 2.30 7.03 -2.39 -0.02 2.28 16 31 H 0.40 12.60 3.62 -92.71 -0.34 12.26 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 35 H 0.06 3.15 6.07 -2.38 -0.01 3.14 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 39 H 0.03 1.29 6.86 -2.39 -0.02 1.28 16 40 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 41 H 0.09 1.71 5.57 -2.39 -0.01 1.70 16 42 H 0.08 1.48 7.38 -2.39 -0.02 1.46 16 43 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -66.05 346.88 2.15 -63.90 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.01 Total: 22.59 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 6.74 Total: 3.92 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -4.63 Total: -95.21 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -1.99 Total: -39.82 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -66.05 2.15 -63.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351187650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.444 kcal (2) G-P(sol) polarization free energy of solvation -66.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds