Wall clock time and date at job start Tue Mar 31 2020 07:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33002 * 1 3 3 C 1.50694 * 119.99985 * 2 1 4 4 C 1.53003 * 109.47544 * 94.81143 * 3 2 1 5 5 C 1.52998 * 109.47426 * 174.99580 * 4 3 2 6 6 C 1.53003 * 109.46921 * 295.00231 * 4 3 2 7 7 C 1.47096 * 119.99722 * 179.97438 * 2 1 3 8 8 O 1.21614 * 120.00208 * 255.15055 * 7 2 1 9 9 N 1.34784 * 119.99997 * 75.15177 * 7 2 1 10 10 C 1.46959 * 120.59395 * 174.92828 * 9 7 2 11 11 C 1.53375 * 108.63491 * 235.24799 * 10 9 7 12 12 N 1.46973 * 108.63495 * 310.58030 * 11 10 9 13 13 C 1.34770 * 120.59153 * 235.20276 * 12 11 10 14 14 O 1.21686 * 119.99911 * 184.52105 * 13 12 11 15 15 C 1.46374 * 120.00209 * 4.51870 * 13 12 11 16 16 H 1.08001 * 119.99992 * 337.76521 * 15 13 12 17 17 C 1.40049 * 120.00211 * 157.48154 * 15 13 12 18 18 N 1.30675 * 120.00402 * 171.97112 * 17 15 13 19 19 Si 1.86800 * 119.99857 * 351.97830 * 17 15 13 20 20 H 1.48494 * 109.47316 * 84.65636 * 19 17 15 21 21 H 1.48506 * 109.47224 * 204.65603 * 19 17 15 22 22 H 1.48498 * 109.47155 * 324.65368 * 19 17 15 23 23 C 1.46963 * 118.81061 * 55.47437 * 12 11 10 24 24 C 1.46963 * 120.59025 * 354.95334 * 9 7 2 25 25 H 1.08002 * 119.99878 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00111 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46757 * 214.80935 * 3 2 1 28 28 H 1.09001 * 109.47446 * 334.80734 * 3 2 1 29 29 H 1.09001 * 109.46618 * 54.99363 * 4 3 2 30 30 H 1.09005 * 109.46710 * 60.00048 * 5 4 3 31 31 H 1.09002 * 109.47164 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.47275 * 300.00679 * 5 4 3 33 33 H 1.08992 * 109.46947 * 59.99761 * 6 4 3 34 34 H 1.08997 * 109.46580 * 179.97438 * 6 4 3 35 35 H 1.09001 * 109.46766 * 299.99042 * 6 4 3 36 36 H 1.08996 * 109.60968 * 115.50778 * 10 9 7 37 37 H 1.09001 * 109.75338 * 355.07401 * 10 9 7 38 38 H 1.08997 * 109.61234 * 190.83317 * 11 10 9 39 39 H 1.09006 * 109.75265 * 70.40294 * 11 10 9 40 40 H 0.96996 * 120.00218 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.61205 * 64.26944 * 23 12 11 42 42 H 1.09005 * 109.60826 * 184.78194 * 23 12 11 43 43 H 1.09007 * 109.60780 * 244.49216 * 24 9 7 44 44 H 1.08995 * 109.61236 * 4.83147 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0835 1.3050 0.0000 4 6 2.4433 1.6863 1.4374 5 6 3.3144 2.9441 1.4286 6 6 1.1624 1.9585 2.2287 7 6 2.0654 -1.2739 0.0006 8 8 2.6032 -1.6652 1.0188 9 7 2.1433 -2.0076 -1.1274 10 6 2.9656 -3.2248 -1.1726 11 6 3.9596 -3.1019 -2.3342 12 7 3.2241 -2.6986 -3.5410 13 6 3.3027 -3.4317 -4.6692 14 8 2.7565 -3.0449 -5.6854 15 6 4.0451 -4.6932 -4.6720 16 1 4.8086 -4.8722 -3.9294 17 6 3.7612 -5.6706 -5.6340 18 7 4.5239 -6.7266 -5.7375 19 14 2.2923 -5.4647 -6.7695 20 1 2.6791 -4.6256 -7.9320 21 1 1.8457 -6.7977 -7.2480 22 1 1.1843 -4.8071 -6.0312 23 6 2.4063 -1.4783 -3.4974 24 6 1.4079 -1.6043 -2.3342 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 2.9959 1.1978 -0.5867 28 1 1.4599 2.0847 -0.4374 29 1 2.9916 0.8678 1.9039 30 1 2.7661 3.7625 0.9621 31 1 3.5711 3.2154 2.4527 32 1 4.2269 2.7502 0.8648 33 1 0.5419 1.0624 2.2349 34 1 1.4188 2.2296 3.2528 35 1 0.6142 2.7769 1.7622 36 1 2.3255 -4.0930 -1.3293 37 1 3.5104 -3.3364 -0.2352 38 1 4.4435 -4.0635 -2.5049 39 1 4.7127 -2.3505 -2.0966 40 1 4.3275 -7.4034 -6.4040 41 1 3.0492 -0.6125 -3.3389 42 1 1.8641 -1.3675 -4.4365 43 1 0.6569 -2.3573 -2.5736 44 1 0.9215 -0.6442 -2.1624 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519804158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:07 Heat of formation + Delta-G solvation = -65.145526 kcal Electronic energy + Delta-G solvation = -24459.132519 eV Core-core repulsion = 20990.414247 eV Total energy + Delta-G solvation = -3468.718272 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.27249 -38.44330 -37.01623 -36.10964 -33.70273 -32.92328 -32.68435 -31.00537 -27.79163 -27.44589 -26.86546 -26.28014 -23.79842 -23.07412 -21.23035 -20.45235 -19.60596 -18.15228 -16.97086 -16.40453 -16.08248 -15.66533 -15.65751 -14.96290 -14.83763 -14.59898 -14.38327 -14.26517 -13.98575 -13.58393 -13.17213 -12.78723 -12.55009 -12.48967 -12.38647 -12.36000 -12.12906 -11.84013 -11.79005 -11.37727 -11.28847 -11.15835 -10.99604 -10.88179 -10.85945 -10.80579 -10.44299 -9.81184 -9.62192 -9.31350 -9.06656 -8.78154 -8.05827 -7.58929 -6.67428 -4.88425 1.64272 2.62528 3.09073 3.38387 3.41847 3.61835 4.07024 4.13514 4.41560 4.44228 4.58081 4.73236 4.78624 5.05988 5.12199 5.18966 5.31727 5.33971 5.39843 5.44134 5.49816 5.50651 5.53231 5.61170 5.68289 5.73301 5.75408 5.80316 5.92152 5.95293 6.06970 6.13893 6.17399 6.19917 6.21578 6.33162 6.37317 6.62853 6.96038 7.44864 7.51634 7.79794 8.17507 8.23780 8.63539 9.03404 9.91963 10.33991 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030803 B = 0.003615 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.776569 B = 7743.687246 C = 7922.981692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.142 4.142 3 C -0.068 4.068 4 C -0.095 4.095 5 C -0.146 4.146 6 C -0.147 4.147 7 C 0.552 3.448 8 O -0.542 6.542 9 N -0.600 5.600 10 C 0.096 3.904 11 C 0.108 3.892 12 N -0.633 5.633 13 C 0.558 3.442 14 O -0.614 6.614 15 C -0.536 4.536 16 H 0.092 0.908 17 C 0.104 3.896 18 N -0.828 5.828 19 Si 0.959 3.041 20 H -0.275 1.275 21 H -0.317 1.317 22 H -0.269 1.269 23 C 0.105 3.895 24 C 0.092 3.908 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.051 0.949 40 H 0.282 0.718 41 H 0.052 0.948 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 14.736 12.586 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.145 4.145 3 C -0.106 4.106 4 C -0.113 4.113 5 C -0.203 4.203 6 C -0.204 4.204 7 C 0.340 3.660 8 O -0.420 6.420 9 N -0.333 5.333 10 C -0.026 4.026 11 C -0.017 4.017 12 N -0.367 5.367 13 C 0.367 3.633 14 O -0.505 6.505 15 C -0.572 4.572 16 H 0.110 0.890 17 C -0.114 4.114 18 N -0.458 5.458 19 Si 0.791 3.209 20 H -0.201 1.201 21 H -0.247 1.247 22 H -0.194 1.194 23 C -0.020 4.020 24 C -0.032 4.032 25 H 0.132 0.868 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.130 0.870 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.116 0.884 43 H 0.091 0.909 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.706 14.532 12.548 20.337 hybrid contribution -0.556 -0.043 -0.460 0.723 sum -7.262 14.488 12.088 20.218 Atomic orbital electron populations 1.24331 0.94122 1.02800 0.97708 1.21586 0.95643 0.94608 1.02689 1.20623 0.99990 0.92411 0.97527 1.21077 0.96937 0.98400 0.94883 1.21837 0.99560 0.97210 1.01732 1.21876 0.97372 1.01532 0.99650 1.18615 0.80168 0.84086 0.83093 1.90781 1.47558 1.71779 1.31922 1.48117 1.47561 1.26124 1.11504 1.22142 0.94106 0.86056 1.00346 1.21894 0.93082 1.02639 0.84040 1.47766 1.50409 1.26212 1.12342 1.18399 0.79796 0.84498 0.80601 1.90262 1.55567 1.72094 1.32576 1.20716 1.21336 0.98903 1.16213 0.89037 1.25689 0.97059 0.93270 0.95361 1.69546 1.35885 1.08879 1.31496 0.85383 0.81393 0.73738 0.80400 1.20065 1.24717 1.19387 1.21688 0.93423 0.88397 0.98464 1.22355 0.94862 1.01234 0.84744 0.86836 0.87882 0.90943 0.90423 0.90228 0.92763 0.92634 0.92639 0.92289 0.92882 0.92967 0.90761 0.88621 0.86963 0.93084 0.90738 0.92975 0.88394 0.90864 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 11.45 28.92 0.33 -1.05 16 2 C -0.14 -1.59 3.03 -102.85 -0.31 -1.90 16 3 C -0.07 -0.65 4.86 -27.88 -0.14 -0.79 16 4 C -0.09 -0.90 2.91 -90.62 -0.26 -1.17 16 5 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 6 C -0.15 -1.24 8.83 37.16 0.33 -0.91 16 7 C 0.55 8.15 7.08 -12.66 -0.09 8.06 16 8 O -0.54 -9.70 16.50 5.27 0.09 -9.61 16 9 N -0.60 -8.94 2.95 -173.61 -0.51 -9.46 16 10 C 0.10 1.53 6.58 -3.60 -0.02 1.51 16 11 C 0.11 1.92 6.50 -3.59 -0.02 1.90 16 12 N -0.63 -13.03 2.94 -173.87 -0.51 -13.54 16 13 C 0.56 14.28 7.12 -12.99 -0.09 14.19 16 14 O -0.61 -17.14 12.34 5.20 0.06 -17.07 16 15 C -0.54 -14.57 9.20 -35.63 -0.33 -14.90 16 16 H 0.09 2.47 6.21 -52.49 -0.33 2.14 16 17 C 0.10 2.89 5.52 -17.36 -0.10 2.79 16 18 N -0.83 -23.03 13.92 55.55 0.77 -22.26 16 19 Si 0.96 24.57 25.86 -169.99 -4.40 20.17 16 20 H -0.27 -7.29 7.11 56.52 0.40 -6.88 16 21 H -0.32 -7.68 7.11 56.52 0.40 -7.28 16 22 H -0.27 -7.09 6.86 56.52 0.39 -6.71 16 23 C 0.11 1.77 6.61 -3.37 -0.02 1.75 16 24 C 0.09 1.27 6.38 -3.37 -0.02 1.25 16 25 H 0.11 0.77 8.02 -52.49 -0.42 0.35 16 26 H 0.10 0.95 8.05 -52.49 -0.42 0.53 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.60 8.01 -51.93 -0.42 0.19 16 29 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.54 6.51 -51.93 -0.34 0.21 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.10 1.49 7.03 -51.93 -0.36 1.12 16 38 H 0.11 2.13 5.42 -51.93 -0.28 1.85 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.28 7.24 8.29 -40.82 -0.34 6.90 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 1.78 7.01 -51.93 -0.36 1.42 16 43 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 44 H 0.09 0.99 5.60 -51.93 -0.29 0.70 16 LS Contribution 350.53 15.07 5.28 5.28 Total: -1.00 -32.36 350.53 -6.64 -39.00 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -7.02 Total: -2.42 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -0.41 Total: 9.91 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.25 Total: -45.25 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: 0.15 Total: -26.69 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -4.40 Total: 20.17 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.36 -6.64 -39.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519804158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.147 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds