Wall clock time and date at job start Tue Mar 31 2020 07:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33002 * 1 3 3 C 1.50694 * 119.99985 * 2 1 4 4 C 1.53003 * 109.47544 * 94.81143 * 3 2 1 5 5 C 1.52998 * 109.47426 * 174.99580 * 4 3 2 6 6 C 1.53003 * 109.46921 * 295.00231 * 4 3 2 7 7 C 1.47096 * 119.99722 * 179.97438 * 2 1 3 8 8 O 1.21614 * 120.00208 * 255.15055 * 7 2 1 9 9 N 1.34784 * 119.99997 * 75.15177 * 7 2 1 10 10 C 1.46959 * 120.59395 * 174.92828 * 9 7 2 11 11 C 1.53375 * 108.63491 * 235.24799 * 10 9 7 12 12 N 1.46973 * 108.63495 * 310.58030 * 11 10 9 13 13 C 1.34770 * 120.59153 * 235.20276 * 12 11 10 14 14 O 1.21686 * 119.99911 * 184.52105 * 13 12 11 15 15 C 1.46374 * 120.00209 * 4.51870 * 13 12 11 16 16 H 1.08001 * 119.99992 * 337.76521 * 15 13 12 17 17 C 1.40049 * 120.00211 * 157.48154 * 15 13 12 18 18 N 1.30675 * 120.00402 * 171.97112 * 17 15 13 19 19 Si 1.86800 * 119.99857 * 351.97830 * 17 15 13 20 20 H 1.48494 * 109.47316 * 84.65636 * 19 17 15 21 21 H 1.48506 * 109.47224 * 204.65603 * 19 17 15 22 22 H 1.48498 * 109.47155 * 324.65368 * 19 17 15 23 23 C 1.46963 * 118.81061 * 55.47437 * 12 11 10 24 24 C 1.46963 * 120.59025 * 354.95334 * 9 7 2 25 25 H 1.08002 * 119.99878 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00111 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46757 * 214.80935 * 3 2 1 28 28 H 1.09001 * 109.47446 * 334.80734 * 3 2 1 29 29 H 1.09001 * 109.46618 * 54.99363 * 4 3 2 30 30 H 1.09005 * 109.46710 * 60.00048 * 5 4 3 31 31 H 1.09002 * 109.47164 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.47275 * 300.00679 * 5 4 3 33 33 H 1.08992 * 109.46947 * 59.99761 * 6 4 3 34 34 H 1.08997 * 109.46580 * 179.97438 * 6 4 3 35 35 H 1.09001 * 109.46766 * 299.99042 * 6 4 3 36 36 H 1.08996 * 109.60968 * 115.50778 * 10 9 7 37 37 H 1.09001 * 109.75338 * 355.07401 * 10 9 7 38 38 H 1.08997 * 109.61234 * 190.83317 * 11 10 9 39 39 H 1.09006 * 109.75265 * 70.40294 * 11 10 9 40 40 H 0.96996 * 120.00218 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.61205 * 64.26944 * 23 12 11 42 42 H 1.09005 * 109.60826 * 184.78194 * 23 12 11 43 43 H 1.09007 * 109.60780 * 244.49216 * 24 9 7 44 44 H 1.08995 * 109.61236 * 4.83147 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0835 1.3050 0.0000 4 6 2.4433 1.6863 1.4374 5 6 3.3144 2.9441 1.4286 6 6 1.1624 1.9585 2.2287 7 6 2.0654 -1.2739 0.0006 8 8 2.6032 -1.6652 1.0188 9 7 2.1433 -2.0076 -1.1274 10 6 2.9656 -3.2248 -1.1726 11 6 3.9596 -3.1019 -2.3342 12 7 3.2241 -2.6986 -3.5410 13 6 3.3027 -3.4317 -4.6692 14 8 2.7565 -3.0449 -5.6854 15 6 4.0451 -4.6932 -4.6720 16 1 4.8086 -4.8722 -3.9294 17 6 3.7612 -5.6706 -5.6340 18 7 4.5239 -6.7266 -5.7375 19 14 2.2923 -5.4647 -6.7695 20 1 2.6791 -4.6256 -7.9320 21 1 1.8457 -6.7977 -7.2480 22 1 1.1843 -4.8071 -6.0312 23 6 2.4063 -1.4783 -3.4974 24 6 1.4079 -1.6043 -2.3342 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 2.9959 1.1978 -0.5867 28 1 1.4599 2.0847 -0.4374 29 1 2.9916 0.8678 1.9039 30 1 2.7661 3.7625 0.9621 31 1 3.5711 3.2154 2.4527 32 1 4.2269 2.7502 0.8648 33 1 0.5419 1.0624 2.2349 34 1 1.4188 2.2296 3.2528 35 1 0.6142 2.7769 1.7622 36 1 2.3255 -4.0930 -1.3293 37 1 3.5104 -3.3364 -0.2352 38 1 4.4435 -4.0635 -2.5049 39 1 4.7127 -2.3505 -2.0966 40 1 4.3275 -7.4034 -6.4040 41 1 3.0492 -0.6125 -3.3389 42 1 1.8641 -1.3675 -4.4365 43 1 0.6569 -2.3573 -2.5736 44 1 0.9215 -0.6442 -2.1624 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519804158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:06 Heat of formation + Delta-G solvation = -85.637281 kcal Electronic energy + Delta-G solvation = -24460.021109 eV Core-core repulsion = 20990.414247 eV Total energy + Delta-G solvation = -3469.606861 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.49808 -40.09142 -38.02787 -37.52580 -35.02905 -35.01346 -33.75760 -32.34577 -29.46632 -28.11398 -27.98775 -27.54225 -25.09581 -24.43093 -22.61216 -21.24404 -21.05188 -19.54773 -18.61257 -18.05638 -17.32972 -17.11477 -16.68062 -16.60944 -16.14730 -15.88631 -15.65037 -15.48902 -14.98899 -14.67891 -14.62501 -14.20094 -14.06860 -13.89270 -13.64432 -13.48273 -13.16075 -13.01550 -12.97210 -12.84464 -12.47347 -12.46178 -12.37155 -12.30455 -12.02034 -11.70997 -11.63703 -11.51199 -11.20108 -10.84728 -10.19740 -10.13944 -10.06598 -9.20686 -8.78918 -7.00177 0.84541 1.31450 1.35752 1.49707 1.55511 1.92150 2.06150 2.29822 2.62153 3.25851 3.43777 3.83575 3.86632 3.92953 4.04200 4.11232 4.15608 4.22146 4.36648 4.39011 4.49850 4.63612 4.68669 4.69002 4.79472 4.82607 4.83127 4.86481 4.95915 4.98371 5.06256 5.08149 5.11371 5.26831 5.32146 5.41639 5.48616 5.51120 5.59977 5.65980 5.90991 6.18048 6.31663 6.60675 7.01548 7.05567 7.92108 8.27099 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030803 B = 0.003615 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.776569 B = 7743.687246 C = 7922.981692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.166 4.166 3 C -0.063 4.063 4 C -0.095 4.095 5 C -0.143 4.143 6 C -0.143 4.143 7 C 0.552 3.448 8 O -0.580 6.580 9 N -0.603 5.603 10 C 0.104 3.896 11 C 0.111 3.889 12 N -0.632 5.632 13 C 0.558 3.442 14 O -0.640 6.640 15 C -0.555 4.555 16 H 0.084 0.916 17 C 0.071 3.929 18 N -0.852 5.852 19 Si 1.004 2.996 20 H -0.290 1.290 21 H -0.295 1.295 22 H -0.282 1.282 23 C 0.101 3.899 24 C 0.103 3.897 25 H 0.147 0.853 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.291 0.709 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 16.936 13.180 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.169 4.169 3 C -0.100 4.100 4 C -0.114 4.114 5 C -0.201 4.201 6 C -0.201 4.201 7 C 0.342 3.658 8 O -0.460 6.460 9 N -0.335 5.335 10 C -0.019 4.019 11 C -0.013 4.013 12 N -0.365 5.365 13 C 0.365 3.635 14 O -0.533 6.533 15 C -0.591 4.591 16 H 0.102 0.898 17 C -0.144 4.144 18 N -0.483 5.483 19 Si 0.835 3.165 20 H -0.217 1.217 21 H -0.224 1.224 22 H -0.208 1.208 23 C -0.022 4.022 24 C -0.020 4.020 25 H 0.164 0.836 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.620 16.735 13.172 22.976 hybrid contribution 0.053 -0.674 -0.553 0.873 sum -8.567 16.062 12.620 22.150 Atomic orbital electron populations 1.24636 0.93200 1.04350 0.94002 1.21487 0.96234 0.93187 1.06004 1.20638 0.99865 0.92286 0.97260 1.21047 0.97424 0.97806 0.95074 1.21813 0.99242 0.97000 1.02001 1.21845 0.96701 1.01795 0.99717 1.19268 0.79546 0.84850 0.82118 1.90761 1.49227 1.72801 1.33214 1.48187 1.47450 1.25736 1.12127 1.21926 0.93844 0.86764 0.99392 1.21921 0.93632 1.02156 0.83589 1.47696 1.50369 1.26764 1.11655 1.18241 0.79276 0.84554 0.81468 1.90235 1.56336 1.72872 1.33896 1.20947 1.21888 0.99960 1.16293 0.89809 1.26207 0.98483 0.93404 0.96351 1.69558 1.36775 1.09509 1.32493 0.84753 0.79179 0.74108 0.78487 1.21696 1.22362 1.20846 1.21932 0.93808 0.87161 0.99346 1.22327 0.93658 1.03047 0.82966 0.83567 0.87989 0.92158 0.87593 0.93692 0.91113 0.92431 0.93320 0.93159 0.92908 0.90922 0.91299 0.88346 0.88610 0.91784 0.89822 0.91085 0.89543 0.91242 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 11.45 66.65 0.76 -0.98 16 2 C -0.17 -3.24 3.03 -18.71 -0.06 -3.30 16 3 C -0.06 -1.03 4.86 29.85 0.14 -0.89 16 4 C -0.09 -1.65 2.91 -10.79 -0.03 -1.68 16 5 C -0.14 -2.03 9.19 71.98 0.66 -1.37 16 6 C -0.14 -2.03 8.83 71.98 0.64 -1.40 16 7 C 0.55 15.51 7.08 86.57 0.61 16.12 16 8 O -0.58 -20.61 16.50 -4.08 -0.07 -20.68 16 9 N -0.60 -17.07 2.95 -821.43 -2.42 -19.49 16 10 C 0.10 3.28 6.58 86.42 0.57 3.85 16 11 C 0.11 3.93 6.50 86.42 0.56 4.49 16 12 N -0.63 -25.74 2.94 -822.22 -2.42 -28.16 16 13 C 0.56 28.67 7.12 86.36 0.61 29.28 16 14 O -0.64 -35.77 12.34 -4.30 -0.05 -35.83 16 15 C -0.55 -30.65 9.20 24.83 0.23 -30.42 16 16 H 0.08 4.65 6.21 -2.91 -0.02 4.63 16 17 C 0.07 3.97 5.52 85.30 0.47 4.44 16 18 N -0.85 -47.70 13.92 21.84 0.30 -47.40 16 19 Si 1.00 50.69 25.86 68.60 1.77 52.47 16 20 H -0.29 -15.26 7.11 99.48 0.71 -14.55 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.28 -14.76 6.86 99.48 0.68 -14.07 16 23 C 0.10 3.24 6.61 86.56 0.57 3.82 16 24 C 0.10 2.61 6.38 86.56 0.55 3.17 16 25 H 0.15 1.15 8.02 -2.91 -0.02 1.13 16 26 H 0.10 1.50 8.05 -2.91 -0.02 1.47 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.11 1.14 8.01 -2.39 -0.02 1.12 16 29 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 30 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.05 0.80 6.51 -2.39 -0.02 0.78 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.10 3.07 7.03 -2.39 -0.02 3.05 16 38 H 0.10 3.73 5.42 -2.39 -0.01 3.72 16 39 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.29 14.90 8.29 -92.71 -0.77 14.14 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.09 3.03 7.01 -2.38 -0.02 3.01 16 43 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.13 2.30 5.60 -2.39 -0.01 2.28 16 Total: -1.00 -70.50 350.53 4.37 -66.13 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.95 Total: 7.81 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: 6.30 Total: 25.14 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -4.54 Total: -95.04 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -0.12 Total: -56.51 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 1.77 Total: 52.47 kcal Total: -70.50 4.37 -66.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519804158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.507 kcal (2) G-P(sol) polarization free energy of solvation -70.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds