Wall clock time and date at job start Tue Mar 31 2020 07:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34958 * 125.63763 * 2 1 4 4 C 1.50697 * 125.50400 * 0.02562 * 3 2 1 5 5 N 1.46901 * 109.46943 * 274.71332 * 4 3 2 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 3 7 7 C 1.52993 * 109.47039 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47206 * 299.99787 * 7 6 5 9 9 C 1.53001 * 109.47323 * 60.00045 * 7 6 5 10 10 C 1.53004 * 109.47360 * 180.02562 * 7 6 5 11 11 C 1.50697 * 109.47387 * 179.97438 * 10 7 6 12 12 H 1.08000 * 120.00144 * 0.02562 * 11 10 7 13 13 C 1.37874 * 119.99821 * 179.97438 * 11 10 7 14 14 N 1.31510 * 120.00108 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99834 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46679 * 90.00592 * 15 13 11 17 17 H 1.48496 * 109.47358 * 209.99839 * 15 13 11 18 18 H 1.48495 * 109.47285 * 330.00458 * 15 13 11 19 19 C 1.35483 * 108.98487 * 179.74022 * 3 2 1 20 20 C 1.39802 * 107.84284 * 0.23902 * 19 3 2 21 21 C 1.37699 * 125.63291 * 180.15776 * 2 1 3 22 22 C 1.46488 * 126.26460 * 359.97438 * 21 2 1 23 23 O 1.21625 * 120.00194 * 180.28248 * 22 21 2 24 24 O 1.34902 * 120.00179 * 0.28137 * 22 21 2 25 25 H 1.09005 * 109.46989 * 89.99689 * 1 2 3 26 26 H 1.08998 * 109.47216 * 209.99888 * 1 2 3 27 27 H 1.08999 * 109.46765 * 330.00491 * 1 2 3 28 28 H 1.09004 * 109.46763 * 154.71773 * 4 3 2 29 29 H 1.08995 * 109.47483 * 34.71430 * 4 3 2 30 30 H 1.00901 * 111.00067 * 303.95401 * 5 4 3 31 31 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 32 32 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 33 33 H 1.08999 * 109.47049 * 60.00315 * 8 7 6 34 34 H 1.09005 * 109.47151 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.47171 * 300.00432 * 8 7 6 36 36 H 1.08991 * 109.46963 * 60.00286 * 9 7 6 37 37 H 1.09005 * 109.47384 * 179.97438 * 9 7 6 38 38 H 1.08999 * 109.47105 * 299.99791 * 9 7 6 39 39 H 1.09001 * 109.46514 * 300.00105 * 10 7 6 40 40 H 1.08998 * 109.46924 * 59.99625 * 10 7 6 41 41 H 0.97004 * 119.99990 * 179.97438 * 14 13 11 42 42 H 1.07998 * 126.08043 * 180.21154 * 19 3 2 43 43 H 1.07999 * 126.51189 * 179.97438 * 20 19 3 44 44 H 0.96693 * 116.99860 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0968 0.0000 4 6 1.7643 2.5229 0.0005 5 7 1.4978 2.9498 -1.3796 6 6 1.0207 4.3387 -1.4182 7 6 0.7540 4.7462 -2.8685 8 6 2.0474 4.6287 -3.6774 9 6 -0.3091 3.8248 -3.4700 10 6 0.2576 6.1929 -2.9088 11 6 -0.0044 6.5945 -4.3375 12 1 0.1656 5.8884 -5.1368 13 6 -0.4623 7.8630 -4.6241 14 7 -0.6698 8.7227 -3.6507 15 14 -0.7864 8.3611 -6.3951 16 1 -2.1930 8.0425 -6.7492 17 1 -0.5555 9.8198 -6.5493 18 1 0.1313 7.6168 -7.2945 19 6 3.5494 0.7086 0.0058 20 6 3.5784 -0.6891 0.0041 21 6 2.2673 -1.1192 -0.0031 22 6 1.8121 -2.5115 -0.0064 23 8 2.6243 -3.4169 -0.0037 24 8 0.4921 -2.7897 -0.0123 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 2.5264 3.1669 0.4394 29 1 0.8477 2.5936 0.5861 30 1 2.3158 2.8326 -1.9587 31 1 0.0990 4.4223 -0.8422 32 1 1.7779 4.9950 -0.9893 33 1 2.4014 3.5982 -3.6488 34 1 1.8573 4.9186 -4.7108 35 1 2.8048 5.2851 -3.2489 36 1 -1.2305 3.9086 -2.8938 37 1 -0.4995 4.1154 -4.5032 38 1 0.0449 2.7943 -3.4414 39 1 -0.6637 6.2770 -2.3325 40 1 1.0153 6.8490 -2.4805 41 1 -0.9915 9.6153 -3.8524 42 1 4.4088 1.3625 0.0105 43 1 4.4596 -1.3135 0.0071 44 1 0.2402 -3.7232 -0.0147 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600915895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:20 Heat of formation + Delta-G solvation = -58.777843 kcal Electronic energy + Delta-G solvation = -23575.572760 eV Core-core repulsion = 20107.130611 eV Total energy + Delta-G solvation = -3468.442149 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.75336 -39.85899 -37.70207 -36.38597 -34.56760 -33.07088 -32.29238 -30.14415 -27.19324 -26.70051 -26.41232 -26.33931 -24.55065 -23.12781 -22.13748 -20.45261 -19.76186 -18.32745 -18.03130 -17.42671 -16.31907 -16.24868 -15.88537 -15.27898 -14.74324 -14.61706 -14.17976 -14.02551 -13.99677 -13.53684 -13.23696 -12.97954 -12.69472 -12.67136 -12.40946 -12.22672 -12.03338 -11.82765 -11.77171 -11.60465 -11.05234 -11.00264 -10.91659 -10.79265 -10.53222 -10.31572 -10.16653 -9.73039 -9.08622 -8.93408 -8.88112 -8.46742 -8.34218 -8.18530 -5.98835 -3.99003 1.00508 2.40088 2.52096 2.84152 2.96312 3.31699 3.38534 3.41225 4.34317 4.47624 4.57565 4.67865 4.85216 5.00951 5.17940 5.31618 5.37140 5.38103 5.43941 5.53413 5.62836 5.71215 5.85248 5.93529 6.01042 6.14387 6.18308 6.26506 6.45496 6.57323 6.60846 6.73372 6.78761 6.80191 6.94653 7.11778 7.16782 7.21254 7.30270 7.54690 7.62466 7.66920 7.81442 8.01256 8.45463 9.06360 9.64085 11.12802 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031468 B = 0.002730 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.586521 B =10255.023720 C =10471.023475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.400 5.400 3 C 0.080 3.920 4 C 0.116 3.884 5 N -0.683 5.683 6 C 0.070 3.930 7 C -0.058 4.058 8 C -0.130 4.130 9 C -0.116 4.116 10 C 0.034 3.966 11 C -0.507 4.507 12 H 0.059 0.941 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.887 3.113 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.274 1.274 19 C -0.212 4.212 20 C -0.092 4.092 21 C -0.061 4.061 22 C 0.558 3.442 23 O -0.514 6.514 24 O -0.519 6.519 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.345 0.655 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.033 0.967 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.015 0.985 40 H 0.013 0.987 41 H 0.259 0.741 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.782 -18.564 9.714 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.073 5.073 3 C -0.040 4.040 4 C -0.014 4.014 5 N -0.317 5.317 6 C -0.059 4.059 7 C -0.058 4.058 8 C -0.187 4.187 9 C -0.173 4.173 10 C -0.003 4.003 11 C -0.546 4.546 12 H 0.077 0.923 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.716 3.284 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.236 4.236 20 C -0.119 4.119 21 C -0.170 4.170 22 C 0.404 3.596 23 O -0.403 6.403 24 O -0.332 6.332 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.165 0.835 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.164 0.836 43 H 0.167 0.833 44 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.006 -18.540 9.741 21.158 hybrid contribution 0.354 0.320 -0.768 0.904 sum 3.360 -18.220 8.973 20.586 Atomic orbital electron populations 1.22273 0.75774 1.04584 1.04635 1.43796 1.06981 1.04661 1.51898 1.20502 0.90351 0.88919 1.04265 1.20509 1.00394 0.87921 0.92577 1.60638 1.39069 1.24228 1.07716 1.22146 0.98948 0.85723 0.99039 1.20628 0.95331 0.98716 0.91130 1.21775 0.96820 0.98362 1.01736 1.21595 0.97479 0.97362 1.00851 1.19122 0.95912 0.88165 0.97148 1.21230 1.43194 0.97368 0.92766 0.92298 1.25010 0.95933 0.96838 0.96787 1.69962 1.46588 1.05909 1.31297 0.86667 0.78561 0.77648 0.85564 1.20790 1.21380 1.19926 1.20716 0.95529 0.94708 1.12636 1.21283 0.94056 0.94913 1.01599 1.19221 0.90847 0.83652 1.23303 1.19503 0.79885 0.87971 0.72276 1.90946 1.55030 1.46669 1.47628 1.84645 1.26408 1.35783 1.86346 0.89785 0.88727 0.89459 0.92561 0.90214 0.83547 0.91487 0.95463 0.94782 0.91692 0.94000 0.94231 0.92665 0.94016 0.96711 0.96857 0.93148 0.83621 0.83262 0.72830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 10.33 59.85 0.62 1.21 16 2 N -0.40 -4.38 3.15 -115.78 -0.36 -4.74 16 3 C 0.08 0.89 6.36 -82.20 -0.52 0.36 16 4 C 0.12 1.25 5.80 -4.98 -0.03 1.22 16 5 N -0.68 -8.88 5.70 -115.06 -0.66 -9.54 16 6 C 0.07 1.09 4.65 -3.82 -0.02 1.08 16 7 C -0.06 -1.09 0.60 -154.51 -0.09 -1.18 16 8 C -0.13 -2.32 7.89 37.16 0.29 -2.02 16 9 C -0.12 -2.13 8.07 37.16 0.30 -1.83 16 10 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 11 C -0.51 -13.58 7.65 -34.44 -0.26 -13.85 16 12 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 13 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 14 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 15 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 C -0.21 -2.29 10.71 -39.98 -0.43 -2.72 16 20 C -0.09 -1.05 10.66 -39.09 -0.42 -1.47 16 21 C -0.06 -0.72 6.88 -82.00 -0.56 -1.28 16 22 C 0.56 6.25 8.29 34.05 0.28 6.53 16 23 O -0.51 -7.03 17.67 -19.36 -0.34 -7.37 16 24 O -0.52 -3.97 10.87 -41.04 -0.45 -4.42 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 0.72 6.16 -51.93 -0.32 0.40 16 27 H 0.09 0.68 7.03 -51.93 -0.37 0.31 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.81 7.13 -51.93 -0.37 0.44 16 30 H 0.34 4.53 6.76 -39.29 -0.27 4.26 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 34 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 1.11 6.62 -51.93 -0.34 0.76 16 38 H 0.04 0.69 7.60 -51.93 -0.39 0.30 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.41 1.29 9.11 45.56 0.42 1.71 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -31.90 357.78 -7.74 -39.65 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.99 Total: 2.23 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.05 Total: -11.80 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.28 Total: -39.99 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -0.79 Total: -11.79 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.90 -7.74 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600915895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.132 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds