Wall clock time and date at job start Tue Mar 31 2020 07:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34958 * 125.63763 * 2 1 4 4 C 1.50697 * 125.50400 * 0.02562 * 3 2 1 5 5 N 1.46901 * 109.46943 * 274.71332 * 4 3 2 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 3 7 7 C 1.52993 * 109.47039 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47206 * 299.99787 * 7 6 5 9 9 C 1.53001 * 109.47323 * 60.00045 * 7 6 5 10 10 C 1.53004 * 109.47360 * 180.02562 * 7 6 5 11 11 C 1.50697 * 109.47387 * 179.97438 * 10 7 6 12 12 H 1.08000 * 120.00144 * 0.02562 * 11 10 7 13 13 C 1.37874 * 119.99821 * 179.97438 * 11 10 7 14 14 N 1.31510 * 120.00108 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99834 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46679 * 90.00592 * 15 13 11 17 17 H 1.48496 * 109.47358 * 209.99839 * 15 13 11 18 18 H 1.48495 * 109.47285 * 330.00458 * 15 13 11 19 19 C 1.35483 * 108.98487 * 179.74022 * 3 2 1 20 20 C 1.39802 * 107.84284 * 0.23902 * 19 3 2 21 21 C 1.37699 * 125.63291 * 180.15776 * 2 1 3 22 22 C 1.46488 * 126.26460 * 359.97438 * 21 2 1 23 23 O 1.21625 * 120.00194 * 180.28248 * 22 21 2 24 24 O 1.34902 * 120.00179 * 0.28137 * 22 21 2 25 25 H 1.09005 * 109.46989 * 89.99689 * 1 2 3 26 26 H 1.08998 * 109.47216 * 209.99888 * 1 2 3 27 27 H 1.08999 * 109.46765 * 330.00491 * 1 2 3 28 28 H 1.09004 * 109.46763 * 154.71773 * 4 3 2 29 29 H 1.08995 * 109.47483 * 34.71430 * 4 3 2 30 30 H 1.00901 * 111.00067 * 303.95401 * 5 4 3 31 31 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 32 32 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 33 33 H 1.08999 * 109.47049 * 60.00315 * 8 7 6 34 34 H 1.09005 * 109.47151 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.47171 * 300.00432 * 8 7 6 36 36 H 1.08991 * 109.46963 * 60.00286 * 9 7 6 37 37 H 1.09005 * 109.47384 * 179.97438 * 9 7 6 38 38 H 1.08999 * 109.47105 * 299.99791 * 9 7 6 39 39 H 1.09001 * 109.46514 * 300.00105 * 10 7 6 40 40 H 1.08998 * 109.46924 * 59.99625 * 10 7 6 41 41 H 0.97004 * 119.99990 * 179.97438 * 14 13 11 42 42 H 1.07998 * 126.08043 * 180.21154 * 19 3 2 43 43 H 1.07999 * 126.51189 * 179.97438 * 20 19 3 44 44 H 0.96693 * 116.99860 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0968 0.0000 4 6 1.7643 2.5229 0.0005 5 7 1.4978 2.9498 -1.3796 6 6 1.0207 4.3387 -1.4182 7 6 0.7540 4.7462 -2.8685 8 6 2.0474 4.6287 -3.6774 9 6 -0.3091 3.8248 -3.4700 10 6 0.2576 6.1929 -2.9088 11 6 -0.0044 6.5945 -4.3375 12 1 0.1656 5.8884 -5.1368 13 6 -0.4623 7.8630 -4.6241 14 7 -0.6698 8.7227 -3.6507 15 14 -0.7864 8.3611 -6.3951 16 1 -2.1930 8.0425 -6.7492 17 1 -0.5555 9.8198 -6.5493 18 1 0.1313 7.6168 -7.2945 19 6 3.5494 0.7086 0.0058 20 6 3.5784 -0.6891 0.0041 21 6 2.2673 -1.1192 -0.0031 22 6 1.8121 -2.5115 -0.0064 23 8 2.6243 -3.4169 -0.0037 24 8 0.4921 -2.7897 -0.0123 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 2.5264 3.1669 0.4394 29 1 0.8477 2.5936 0.5861 30 1 2.3158 2.8326 -1.9587 31 1 0.0990 4.4223 -0.8422 32 1 1.7779 4.9950 -0.9893 33 1 2.4014 3.5982 -3.6488 34 1 1.8573 4.9186 -4.7108 35 1 2.8048 5.2851 -3.2489 36 1 -1.2305 3.9086 -2.8938 37 1 -0.4995 4.1154 -4.5032 38 1 0.0449 2.7943 -3.4414 39 1 -0.6637 6.2770 -2.3325 40 1 1.0153 6.8490 -2.4805 41 1 -0.9915 9.6153 -3.8524 42 1 4.4088 1.3625 0.0105 43 1 4.4596 -1.3135 0.0071 44 1 0.2402 -3.7232 -0.0147 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600915895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:19 Heat of formation + Delta-G solvation = -79.114503 kcal Electronic energy + Delta-G solvation = -23576.454623 eV Core-core repulsion = 20107.130611 eV Total energy + Delta-G solvation = -3469.324012 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.56306 -40.66927 -39.12113 -37.15408 -35.90704 -34.21985 -33.83568 -31.16837 -28.99225 -27.86797 -27.61115 -27.37186 -25.95789 -24.26478 -23.53725 -21.27159 -20.57804 -19.50392 -19.08746 -18.31649 -18.27674 -17.08631 -16.98801 -16.58733 -16.07311 -15.72393 -15.35483 -15.17356 -14.96234 -14.62310 -14.42585 -14.19669 -13.94560 -13.81733 -13.72278 -13.35151 -13.20170 -12.92037 -12.77336 -12.68197 -12.61108 -12.55792 -12.36034 -12.20585 -12.12142 -11.92947 -11.86955 -11.34804 -10.83775 -10.74141 -10.48518 -9.73498 -9.42281 -9.16603 -8.12698 -6.18903 0.16093 1.41656 1.42126 1.52326 1.56718 1.75210 2.12153 2.14735 2.44816 3.21643 3.35557 3.73435 3.96331 4.05257 4.15219 4.24251 4.30704 4.42608 4.47427 4.59649 4.61528 4.66391 4.81971 4.84719 4.86200 4.99364 5.04680 5.10858 5.23118 5.24196 5.25300 5.48696 5.55309 5.57177 5.61860 5.67275 5.76767 5.90169 5.95539 5.98423 6.03466 6.19358 6.39363 6.48636 6.93501 6.96655 7.48380 8.99431 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031468 B = 0.002730 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.586521 B =10255.023720 C =10471.023475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.400 5.400 3 C 0.073 3.927 4 C 0.120 3.880 5 N -0.680 5.680 6 C 0.084 3.916 7 C -0.054 4.054 8 C -0.123 4.123 9 C -0.106 4.106 10 C 0.040 3.960 11 C -0.513 4.513 12 H 0.064 0.936 13 C -0.003 4.003 14 N -0.937 5.937 15 Si 0.952 3.048 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.213 4.213 20 C -0.105 4.105 21 C -0.078 4.078 22 C 0.563 3.437 23 O -0.546 6.546 24 O -0.508 6.508 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.347 0.653 31 H 0.064 0.936 32 H 0.025 0.975 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.065 0.935 39 H -0.013 1.013 40 H -0.014 1.014 41 H 0.259 0.741 42 H 0.161 0.839 43 H 0.155 0.845 44 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 -19.854 9.444 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.073 5.073 3 C -0.048 4.048 4 C -0.009 4.009 5 N -0.313 5.313 6 C -0.045 4.045 7 C -0.055 4.055 8 C -0.180 4.180 9 C -0.163 4.163 10 C 0.002 3.998 11 C -0.551 4.551 12 H 0.082 0.918 13 C -0.200 4.200 14 N -0.578 5.578 15 Si 0.778 3.222 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.237 4.237 20 C -0.132 4.132 21 C -0.188 4.188 22 C 0.410 3.590 23 O -0.437 6.437 24 O -0.323 6.323 25 H 0.100 0.900 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.166 0.834 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.005 0.995 40 H 0.004 0.996 41 H 0.068 0.932 42 H 0.179 0.821 43 H 0.172 0.828 44 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 3.083 -19.860 9.468 22.216 hybrid contribution 0.289 0.676 -0.637 0.973 sum 3.373 -19.184 8.831 21.386 Atomic orbital electron populations 1.22412 0.74669 1.05679 1.04759 1.43946 1.07696 1.04332 1.51352 1.20556 0.90561 0.88956 1.04699 1.20509 1.01266 0.87890 0.91219 1.60543 1.39366 1.22017 1.09346 1.21823 0.98999 0.87330 0.96364 1.20485 0.95905 0.95251 0.93845 1.21688 0.96115 1.00232 0.99980 1.21488 0.97131 0.98395 0.99289 1.19006 0.93896 0.91505 0.95356 1.21630 1.42053 0.97386 0.94054 0.91809 1.25870 0.96066 0.97134 1.00899 1.70094 1.47976 1.06297 1.33481 0.85635 0.78665 0.77187 0.80716 1.20205 1.21316 1.18819 1.20963 0.96078 0.94672 1.11978 1.21506 0.94405 0.95470 1.01795 1.19445 0.91342 0.84260 1.23765 1.19446 0.80509 0.87505 0.71511 1.90932 1.56055 1.47442 1.49313 1.84593 1.24383 1.37788 1.85508 0.90036 0.87692 0.88445 0.91401 0.89374 0.83357 0.91786 0.95666 0.91642 0.93831 0.94230 0.94792 0.94674 0.91656 0.99504 0.99563 0.93203 0.82110 0.82781 0.70443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 10.33 127.77 1.32 2.30 16 2 N -0.40 -7.93 3.15 -520.20 -1.64 -9.57 16 3 C 0.07 1.45 6.36 41.44 0.26 1.71 16 4 C 0.12 2.28 5.80 85.56 0.50 2.78 16 5 N -0.68 -15.92 5.70 -517.93 -2.95 -18.87 16 6 C 0.08 2.50 4.65 86.30 0.40 2.90 16 7 C -0.05 -2.02 0.60 -52.18 -0.03 -2.05 16 8 C -0.12 -4.22 7.89 71.98 0.57 -3.65 16 9 C -0.11 -3.77 8.07 71.98 0.58 -3.19 16 10 C 0.04 1.98 4.04 29.85 0.12 2.10 16 11 C -0.51 -27.74 7.65 25.60 0.20 -27.55 16 12 H 0.06 3.33 5.68 -2.91 -0.02 3.31 16 13 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 14 N -0.94 -56.32 13.29 21.45 0.28 -56.03 16 15 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 19 C -0.21 -4.18 10.71 22.01 0.24 -3.95 16 20 C -0.11 -2.27 10.66 22.59 0.24 -2.03 16 21 C -0.08 -1.73 6.88 40.31 0.28 -1.45 16 22 C 0.56 11.89 8.29 69.97 0.58 12.47 16 23 O -0.55 -14.55 17.67 19.43 0.34 -14.21 16 24 O -0.51 -6.73 10.87 -58.16 -0.63 -7.36 16 25 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.10 1.34 6.16 -2.39 -0.01 1.33 16 27 H 0.10 1.27 7.03 -2.39 -0.02 1.25 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.55 7.13 -2.39 -0.02 1.54 16 30 H 0.35 8.04 6.76 -89.69 -0.61 7.44 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 1.83 6.57 -2.39 -0.02 1.81 16 34 H 0.04 1.67 6.62 -2.38 -0.02 1.65 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.03 1.37 6.62 -2.38 -0.02 1.35 16 38 H 0.06 2.01 7.60 -2.39 -0.02 1.99 16 39 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 40 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 41 H 0.26 14.79 8.31 -92.71 -0.77 14.01 16 42 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 43 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 44 H 0.43 1.75 9.11 -74.06 -0.67 1.08 16 Total: -1.00 -68.92 357.78 2.88 -66.04 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -0.26 Total: 13.38 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 5.71 Total: -19.29 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -4.31 Total: -84.47 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.29 Total: -21.56 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -68.92 2.88 -66.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600915895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.073 kcal (2) G-P(sol) polarization free energy of solvation -68.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds