Wall clock time and date at job start Tue Mar 31 2020 07:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47210 * 108.43682 * 3 2 1 5 5 C 1.53002 * 109.47500 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47103 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00395 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99610 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99897 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47001 * 185.05238 * 9 8 6 11 11 N 1.46506 * 109.54295 * 305.14052 * 10 9 8 12 12 C 1.36939 * 119.99939 * 302.39737 * 11 10 9 13 13 H 1.08003 * 120.00031 * 354.44947 * 12 11 10 14 14 C 1.38807 * 119.99733 * 174.44100 * 12 11 10 15 15 N 1.31617 * 120.00410 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99976 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47213 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47433 * 120.00385 * 16 14 12 19 19 H 1.48504 * 109.47255 * 240.00664 * 16 14 12 20 20 C 1.53180 * 109.54064 * 184.96858 * 10 9 8 21 21 C 1.53109 * 109.15669 * 183.23864 * 20 10 9 22 22 O 1.42907 * 109.48633 * 57.47277 * 21 20 10 23 23 C 1.42906 * 114.09799 * 298.88880 * 22 21 20 24 24 C 1.53094 * 109.41477 * 61.15758 * 23 22 21 25 25 H 4.44645 * 5.63341 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.47315 * 348.43463 * 3 2 1 27 27 H 1.09002 * 109.46925 * 228.43351 * 3 2 1 28 28 H 1.08998 * 109.47160 * 59.99687 * 4 3 2 29 29 H 1.09002 * 109.46907 * 299.99681 * 4 3 2 30 30 H 1.09005 * 109.46942 * 59.99419 * 5 4 3 31 31 H 1.09002 * 109.46812 * 299.99778 * 5 4 3 32 32 H 0.97002 * 120.00062 * 0.02562 * 8 6 5 33 33 H 1.08994 * 109.46685 * 65.05267 * 9 8 6 34 34 H 1.08998 * 109.47105 * 305.05145 * 9 8 6 35 35 H 0.97001 * 120.00037 * 122.39366 * 11 10 9 36 36 H 0.97001 * 120.00451 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.52076 * 303.05046 * 20 10 9 38 38 H 1.08995 * 109.52586 * 63.24661 * 20 10 9 39 39 H 1.09005 * 109.40439 * 297.49266 * 21 20 10 40 40 H 1.08998 * 109.49390 * 177.50754 * 21 20 10 41 41 H 1.09005 * 109.47728 * 301.17832 * 23 22 21 42 42 H 1.08994 * 109.49232 * 181.14613 * 23 22 21 43 43 H 1.08999 * 109.52381 * 182.48901 * 24 23 22 44 44 H 1.08998 * 109.57528 * 62.33023 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4571 -1.3685 5 6 4.6859 0.4584 -1.3683 6 6 5.1879 0.9074 -2.7164 7 8 4.3997 1.1973 -3.5913 8 7 6.5130 0.9867 -2.9498 9 6 7.0011 1.4227 -4.2605 10 6 8.5260 1.3047 -4.3018 11 7 9.1058 2.0515 -3.1826 12 6 8.8420 3.3878 -3.0413 13 1 8.2814 3.9109 -3.8019 14 6 9.2950 4.0698 -1.9205 15 7 9.9785 3.4324 -0.9937 16 14 8.9346 5.8925 -1.7272 17 1 8.1549 6.3697 -2.8976 18 1 8.1489 6.1130 -0.4865 19 1 10.2128 6.6438 -1.6439 20 6 9.0483 1.8753 -5.6239 21 6 10.5654 1.6797 -5.6911 22 8 10.8733 0.2906 -5.5574 23 6 10.4508 -0.2842 -4.3191 24 6 8.9290 -0.1694 -4.1978 25 1 -1.0500 0.0002 0.0002 26 1 3.0098 -1.0059 0.2060 27 1 3.0090 0.6827 0.7689 28 1 2.7920 1.4637 -1.5745 29 1 2.7928 -0.2249 -2.1374 30 1 5.0500 -0.5481 -1.1620 31 1 5.0485 1.1407 -0.5995 32 1 7.1434 0.7545 -2.2501 33 1 6.7122 2.4600 -4.4291 34 1 6.5668 0.7936 -5.0375 35 1 9.6765 1.5993 -2.5417 36 1 10.2954 3.9091 -0.2106 37 1 8.5778 1.3534 -6.4571 38 1 8.8141 2.9383 -5.6797 39 1 11.0385 2.2364 -4.8821 40 1 10.9371 2.0438 -6.6488 41 1 10.9224 0.2469 -3.4922 42 1 10.7397 -1.3347 -4.2884 43 1 8.6093 -0.5673 -3.2347 44 1 8.4550 -0.7341 -5.0006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699883022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:12 Heat of formation + Delta-G solvation = -37.068006 kcal Electronic energy + Delta-G solvation = -24227.921992 eV Core-core repulsion = 20760.421252 eV Total energy + Delta-G solvation = -3467.500739 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.71034 -38.82417 -36.00918 -35.43903 -33.40107 -32.38407 -32.07169 -30.67696 -29.21382 -28.37090 -26.33651 -24.11179 -23.15170 -22.65069 -21.56046 -19.80266 -18.66369 -18.23996 -17.28692 -16.60346 -15.87217 -15.65223 -15.60880 -15.36814 -14.80627 -14.38015 -14.33722 -14.08871 -13.81763 -13.54540 -13.29874 -12.76369 -12.69160 -12.39944 -12.13478 -11.96172 -11.70287 -11.52451 -11.42770 -10.96416 -10.94335 -10.92285 -10.82488 -10.34430 -10.29354 -10.16367 -10.06633 -9.85065 -9.74289 -9.42158 -9.14953 -8.86717 -8.41506 -7.14072 -5.90941 -3.21349 2.71642 2.75616 3.10101 3.34966 3.43538 3.43698 3.72878 4.29930 4.34187 4.48206 4.97215 5.01680 5.12156 5.16996 5.24349 5.32115 5.48238 5.51151 5.52434 5.53633 5.60647 5.61958 5.71552 5.73888 5.94572 5.97591 6.06606 6.09652 6.14014 6.21450 6.29226 6.29625 6.36857 6.53199 6.54819 6.70528 6.76306 7.06075 7.53346 7.61895 7.67560 8.08958 8.26309 8.73263 9.39401 9.89458 10.26270 11.30756 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.004453 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.332399 B = 6286.291553 C = 7787.515316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.179 4.179 3 C -0.016 4.016 4 C -0.096 4.096 5 C -0.142 4.142 6 C 0.508 3.492 7 O -0.560 6.560 8 N -0.701 5.701 9 C 0.120 3.880 10 C 0.189 3.811 11 N -0.713 5.713 12 C -0.235 4.235 13 H 0.070 0.930 14 C -0.006 4.006 15 N -0.930 5.930 16 Si 0.901 3.099 17 H -0.281 1.281 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.155 4.155 21 C 0.070 3.930 22 O -0.393 6.393 23 C 0.066 3.934 24 C -0.150 4.150 25 H 0.215 0.785 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.404 0.596 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 -9.174 -0.831 11.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.179 4.179 3 C -0.053 4.053 4 C -0.134 4.134 5 C -0.182 4.182 6 C 0.294 3.706 7 O -0.440 6.440 8 N -0.351 5.351 9 C -0.006 4.006 10 C 0.097 3.903 11 N -0.356 5.356 12 C -0.366 4.366 13 H 0.088 0.912 14 C -0.202 4.202 15 N -0.578 5.578 16 Si 0.732 3.268 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.196 4.196 21 C -0.007 4.007 22 O -0.312 6.312 23 C -0.011 4.011 24 C -0.189 4.189 25 H 0.232 0.768 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.240 0.760 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.220 0.780 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.391 -8.887 -1.593 11.668 hybrid contribution -0.073 1.130 1.010 1.518 sum -7.464 -7.756 -0.583 10.780 Atomic orbital electron populations 1.24869 0.95965 1.01664 1.01240 1.23194 0.94642 0.99956 1.00078 1.18819 0.84675 1.02860 0.98935 1.21245 0.93432 1.03265 0.95502 1.21653 0.96850 1.03452 0.96212 1.20520 0.82582 0.77868 0.89656 1.90653 1.55593 1.50730 1.46994 1.45783 1.06434 1.66818 1.16031 1.21721 0.95527 0.99637 0.83700 1.19838 0.90460 0.90291 0.89690 1.42509 1.57650 1.07337 1.28079 1.19112 1.29318 0.85187 1.02980 0.91164 1.24675 1.00817 0.97892 0.96803 1.69647 1.41816 1.35233 1.11068 0.86217 0.77416 0.85588 0.77555 1.20583 1.21917 1.21906 1.22503 0.96873 1.02367 0.97843 1.22447 0.94950 0.81788 1.01470 1.87804 1.80840 1.24773 1.37782 1.22469 0.93624 0.97878 0.87166 1.22348 0.97334 0.96982 1.02206 0.76795 0.89490 0.89339 0.90832 0.90974 0.89081 0.88547 0.75984 0.91816 0.92870 0.78047 0.93522 0.92585 0.90545 0.91522 0.90325 0.92342 0.90002 0.91164 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.33 19.25 29.55 0.57 -1.76 16 2 C -0.18 -2.09 13.34 -37.12 -0.50 -2.58 16 3 C -0.02 -0.16 5.70 -29.52 -0.17 -0.33 16 4 C -0.10 -1.18 4.46 -26.73 -0.12 -1.30 16 5 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 6 C 0.51 8.49 7.83 -10.99 -0.09 8.40 16 7 O -0.56 -11.31 15.98 5.56 0.09 -11.22 16 8 N -0.70 -11.75 5.12 -60.30 -0.31 -12.06 16 9 C 0.12 2.15 4.29 -4.04 -0.02 2.13 16 10 C 0.19 3.27 0.41 -131.63 -0.05 3.22 16 11 N -0.71 -14.89 3.66 -47.06 -0.17 -15.06 16 12 C -0.24 -5.72 8.69 -15.06 -0.13 -5.85 16 13 H 0.07 1.74 6.76 -52.48 -0.35 1.39 16 14 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 15 N -0.93 -25.35 13.06 55.49 0.72 -24.63 16 16 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 C -0.16 -2.62 4.85 -26.58 -0.13 -2.75 16 21 C 0.07 1.18 6.68 37.21 0.25 1.42 16 22 O -0.39 -6.64 10.77 -35.23 -0.38 -7.01 16 23 C 0.07 1.00 6.67 37.21 0.25 1.25 16 24 C -0.15 -2.24 4.81 -26.59 -0.13 -2.37 16 25 H 0.22 1.50 7.80 -54.09 -0.42 1.07 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.03 8.10 -51.93 -0.42 0.60 16 29 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.40 6.58 7.45 -40.82 -0.30 6.28 16 33 H 0.06 1.30 7.45 -51.93 -0.39 0.92 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.38 8.62 6.67 -40.82 -0.27 8.34 16 36 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.38 7.23 -51.93 -0.38 1.00 16 39 H 0.07 1.28 7.75 -51.93 -0.40 0.88 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.06 0.98 7.05 -51.93 -0.37 0.61 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 0.98 7.41 -51.93 -0.38 0.60 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -29.67 361.00 -7.20 -36.86 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -7.05 Total: 14.03 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -0.52 Total: -2.65 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.24 Total: -51.75 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.29 Total: -18.23 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.67 -7.20 -36.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699883022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.204 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds