Wall clock time and date at job start Tue Mar 31 2020 07:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47210 * 108.43682 * 3 2 1 5 5 C 1.53002 * 109.47500 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47103 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00395 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99610 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99897 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47001 * 185.05238 * 9 8 6 11 11 N 1.46506 * 109.54295 * 305.14052 * 10 9 8 12 12 C 1.36939 * 119.99939 * 302.39737 * 11 10 9 13 13 H 1.08003 * 120.00031 * 354.44947 * 12 11 10 14 14 C 1.38807 * 119.99733 * 174.44100 * 12 11 10 15 15 N 1.31617 * 120.00410 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99976 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47213 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47433 * 120.00385 * 16 14 12 19 19 H 1.48504 * 109.47255 * 240.00664 * 16 14 12 20 20 C 1.53180 * 109.54064 * 184.96858 * 10 9 8 21 21 C 1.53109 * 109.15669 * 183.23864 * 20 10 9 22 22 O 1.42907 * 109.48633 * 57.47277 * 21 20 10 23 23 C 1.42906 * 114.09799 * 298.88880 * 22 21 20 24 24 C 1.53094 * 109.41477 * 61.15758 * 23 22 21 25 25 H 4.44645 * 5.63341 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.47315 * 348.43463 * 3 2 1 27 27 H 1.09002 * 109.46925 * 228.43351 * 3 2 1 28 28 H 1.08998 * 109.47160 * 59.99687 * 4 3 2 29 29 H 1.09002 * 109.46907 * 299.99681 * 4 3 2 30 30 H 1.09005 * 109.46942 * 59.99419 * 5 4 3 31 31 H 1.09002 * 109.46812 * 299.99778 * 5 4 3 32 32 H 0.97002 * 120.00062 * 0.02562 * 8 6 5 33 33 H 1.08994 * 109.46685 * 65.05267 * 9 8 6 34 34 H 1.08998 * 109.47105 * 305.05145 * 9 8 6 35 35 H 0.97001 * 120.00037 * 122.39366 * 11 10 9 36 36 H 0.97001 * 120.00451 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.52076 * 303.05046 * 20 10 9 38 38 H 1.08995 * 109.52586 * 63.24661 * 20 10 9 39 39 H 1.09005 * 109.40439 * 297.49266 * 21 20 10 40 40 H 1.08998 * 109.49390 * 177.50754 * 21 20 10 41 41 H 1.09005 * 109.47728 * 301.17832 * 23 22 21 42 42 H 1.08994 * 109.49232 * 181.14613 * 23 22 21 43 43 H 1.08999 * 109.52381 * 182.48901 * 24 23 22 44 44 H 1.08998 * 109.57528 * 62.33023 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4571 -1.3685 5 6 4.6859 0.4584 -1.3683 6 6 5.1879 0.9074 -2.7164 7 8 4.3997 1.1973 -3.5913 8 7 6.5130 0.9867 -2.9498 9 6 7.0011 1.4227 -4.2605 10 6 8.5260 1.3047 -4.3018 11 7 9.1058 2.0515 -3.1826 12 6 8.8420 3.3878 -3.0413 13 1 8.2814 3.9109 -3.8019 14 6 9.2950 4.0698 -1.9205 15 7 9.9785 3.4324 -0.9937 16 14 8.9346 5.8925 -1.7272 17 1 8.1549 6.3697 -2.8976 18 1 8.1489 6.1130 -0.4865 19 1 10.2128 6.6438 -1.6439 20 6 9.0483 1.8753 -5.6239 21 6 10.5654 1.6797 -5.6911 22 8 10.8733 0.2906 -5.5574 23 6 10.4508 -0.2842 -4.3191 24 6 8.9290 -0.1694 -4.1978 25 1 -1.0500 0.0002 0.0002 26 1 3.0098 -1.0059 0.2060 27 1 3.0090 0.6827 0.7689 28 1 2.7920 1.4637 -1.5745 29 1 2.7928 -0.2249 -2.1374 30 1 5.0500 -0.5481 -1.1620 31 1 5.0485 1.1407 -0.5995 32 1 7.1434 0.7545 -2.2501 33 1 6.7122 2.4600 -4.4291 34 1 6.5668 0.7936 -5.0375 35 1 9.6765 1.5993 -2.5417 36 1 10.2954 3.9091 -0.2106 37 1 8.5778 1.3534 -6.4571 38 1 8.8141 2.9383 -5.6797 39 1 11.0385 2.2364 -4.8821 40 1 10.9371 2.0438 -6.6488 41 1 10.9224 0.2469 -3.4922 42 1 10.7397 -1.3347 -4.2884 43 1 8.6093 -0.5673 -3.2347 44 1 8.4550 -0.7341 -5.0006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699883022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:11 Heat of formation + Delta-G solvation = -56.055313 kcal Electronic energy + Delta-G solvation = -24228.745343 eV Core-core repulsion = 20760.421252 eV Total energy + Delta-G solvation = -3468.324091 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09814 -40.17232 -37.36937 -36.45339 -35.04447 -33.87610 -33.13538 -31.97628 -30.95163 -29.44774 -27.57997 -25.92685 -24.47588 -23.87456 -22.76481 -21.11468 -20.11530 -19.18746 -19.01400 -17.84876 -17.17774 -16.99525 -16.88708 -16.69043 -16.21260 -15.96484 -15.60616 -15.36062 -15.25578 -14.88873 -14.47186 -14.21122 -13.83170 -13.67214 -13.47165 -13.22340 -13.15807 -12.90162 -12.87292 -12.67992 -12.46788 -12.20198 -12.08459 -11.92746 -11.71169 -11.51418 -11.16093 -11.13427 -10.97115 -10.96563 -10.75171 -10.32607 -9.85830 -8.97406 -7.90902 -5.16968 1.43731 1.48882 1.53666 1.77177 1.86756 1.93485 2.45134 2.57436 3.07697 3.42628 3.53714 3.75557 3.85940 3.89467 4.01912 4.09310 4.15652 4.20732 4.24260 4.47327 4.52654 4.61465 4.67544 4.70965 4.78245 4.81961 4.82502 4.85398 4.89765 5.03351 5.09977 5.20745 5.21394 5.23075 5.28588 5.32657 5.34963 5.60513 5.67980 6.31167 6.36788 6.72763 6.74305 7.39373 7.41301 8.08899 8.36763 9.31092 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.004453 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.332399 B = 6286.291553 C = 7787.515316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.217 4.217 3 C -0.011 4.011 4 C -0.089 4.089 5 C -0.132 4.132 6 C 0.501 3.499 7 O -0.599 6.599 8 N -0.699 5.699 9 C 0.127 3.873 10 C 0.188 3.812 11 N -0.712 5.712 12 C -0.213 4.213 13 H 0.063 0.937 14 C -0.056 4.056 15 N -0.956 5.956 16 Si 0.945 3.055 17 H -0.279 1.279 18 H -0.299 1.299 19 H -0.298 1.298 20 C -0.154 4.154 21 C 0.075 3.925 22 O -0.397 6.397 23 C 0.064 3.936 24 C -0.142 4.142 25 H 0.243 0.757 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.409 0.591 33 H 0.031 0.969 34 H 0.062 0.938 35 H 0.379 0.621 36 H 0.248 0.752 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.037 0.963 40 H 0.099 0.901 41 H 0.039 0.961 42 H 0.113 0.887 43 H 0.082 0.918 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.399 -10.878 -0.857 13.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.218 4.218 3 C -0.048 4.048 4 C -0.127 4.127 5 C -0.172 4.172 6 C 0.289 3.711 7 O -0.482 6.482 8 N -0.349 5.349 9 C 0.000 4.000 10 C 0.097 3.903 11 N -0.353 5.353 12 C -0.345 4.345 13 H 0.081 0.919 14 C -0.249 4.249 15 N -0.607 5.607 16 Si 0.777 3.223 17 H -0.204 1.204 18 H -0.226 1.226 19 H -0.225 1.225 20 C -0.194 4.194 21 C -0.001 4.001 22 O -0.317 6.317 23 C -0.013 4.013 24 C -0.180 4.180 25 H 0.259 0.741 26 H 0.127 0.873 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.245 0.755 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.213 0.787 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.117 0.883 41 H 0.057 0.943 42 H 0.131 0.869 43 H 0.101 0.899 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.892 -10.605 -1.642 13.321 hybrid contribution 0.021 1.624 0.917 1.865 sum -7.872 -8.980 -0.725 11.964 Atomic orbital electron populations 1.25713 0.97016 1.00700 0.99998 1.23779 0.95736 1.00992 1.01244 1.18823 0.84088 1.04296 0.97551 1.21132 0.93361 1.01542 0.96693 1.21679 0.96681 1.05423 0.93391 1.21331 0.82043 0.76841 0.90868 1.90634 1.56405 1.52416 1.48699 1.45804 1.06788 1.66569 1.15697 1.21569 0.95663 0.97973 0.84759 1.20012 0.89861 0.91823 0.88599 1.42508 1.57557 1.06365 1.28890 1.19208 1.26902 0.86630 1.01768 0.91904 1.25122 1.02162 1.00226 0.97412 1.69736 1.43646 1.35807 1.11484 0.85496 0.76690 0.83072 0.76996 1.20399 1.22636 1.22550 1.22472 0.97210 1.01535 0.98165 1.22373 0.94492 0.81818 1.01453 1.87807 1.81020 1.24374 1.38453 1.22599 0.93562 0.99191 0.85925 1.22301 0.97249 0.94853 1.03611 0.74097 0.87283 0.88314 0.93391 0.92143 0.85627 0.87572 0.75488 0.95024 0.91962 0.78745 0.94267 0.90564 0.92236 0.94491 0.88266 0.94287 0.86939 0.89904 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.27 19.25 74.32 1.43 -2.84 16 2 C -0.22 -4.82 13.34 31.12 0.42 -4.40 16 3 C -0.01 -0.21 5.70 28.79 0.16 -0.04 16 4 C -0.09 -2.10 4.46 30.60 0.14 -1.96 16 5 C -0.13 -3.00 5.70 29.85 0.17 -2.83 16 6 C 0.50 16.34 7.83 87.66 0.69 17.02 16 7 O -0.60 -24.28 15.98 -3.01 -0.05 -24.33 16 8 N -0.70 -22.70 5.12 -463.07 -2.37 -25.07 16 9 C 0.13 4.44 4.29 86.38 0.37 4.81 16 10 C 0.19 6.29 0.41 3.72 0.00 6.29 16 11 N -0.71 -29.51 3.66 -302.80 -1.11 -30.62 16 12 C -0.21 -10.40 8.69 84.03 0.73 -9.67 16 13 H 0.06 3.15 6.76 -2.91 -0.02 3.13 16 14 C -0.06 -2.93 5.50 84.86 0.47 -2.46 16 15 N -0.96 -52.55 13.06 21.65 0.28 -52.27 16 16 Si 0.95 44.32 29.55 68.60 2.03 46.35 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 19 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 20 C -0.15 -5.01 4.85 30.69 0.15 -4.86 16 21 C 0.08 2.44 6.68 72.02 0.48 2.92 16 22 O -0.40 -12.57 10.77 -148.98 -1.60 -14.17 16 23 C 0.06 1.79 6.67 72.01 0.48 2.27 16 24 C -0.14 -3.87 4.81 30.68 0.15 -3.72 16 25 H 0.24 2.84 7.80 -4.42 -0.03 2.81 16 26 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 29 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 30 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.41 12.66 7.45 -92.71 -0.69 11.97 16 33 H 0.03 1.30 7.45 -2.39 -0.02 1.29 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.38 16.86 6.67 -92.71 -0.62 16.24 16 36 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 37 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.06 2.14 7.23 -2.39 -0.02 2.12 16 39 H 0.04 1.42 7.75 -2.38 -0.02 1.40 16 40 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.04 1.26 7.05 -2.38 -0.02 1.24 16 42 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.08 2.07 7.41 -2.39 -0.02 2.05 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -64.51 361.00 2.70 -61.81 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -0.31 Total: 37.76 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 5.83 Total: 0.53 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -3.20 Total: -107.96 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -1.65 Total: -38.50 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -64.51 2.70 -61.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699883022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.757 kcal (2) G-P(sol) polarization free energy of solvation -64.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds