Wall clock time and date at job start Tue Mar 31 2020 06:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47484 * 2 1 4 4 C 1.50706 * 109.47168 * 119.99701 * 2 1 3 5 5 O 1.33650 * 125.79892 * 300.02575 * 4 2 1 6 6 C 1.34216 * 110.90818 * 179.97438 * 5 4 2 7 7 C 1.34180 * 109.12551 * 359.97438 * 6 5 4 8 8 C 1.36415 * 125.80475 * 120.31490 * 4 2 1 9 9 C 1.47386 * 127.18825 * 0.05907 * 8 4 2 10 10 O 1.21608 * 120.00351 * 0.17372 * 9 8 4 11 11 N 1.34773 * 119.99619 * 180.17280 * 9 8 4 12 12 C 1.46504 * 120.00219 * 179.97438 * 11 9 8 13 13 C 1.52991 * 109.47460 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47229 * 179.97438 * 13 12 11 15 15 N 1.46504 * 109.47284 * 179.97438 * 14 13 12 16 16 C 1.46503 * 119.99876 * 90.00144 * 15 14 13 17 17 C 1.36935 * 120.00351 * 270.00037 * 15 14 13 18 18 H 1.07994 * 120.00247 * 142.03671 * 17 15 14 19 19 C 1.38821 * 120.00009 * 322.03745 * 17 15 14 20 20 N 1.31611 * 119.99871 * 157.01595 * 19 17 15 21 21 Si 1.86799 * 119.99710 * 337.02175 * 19 17 15 22 22 H 1.48503 * 109.47254 * 95.67957 * 21 19 17 23 23 H 1.48505 * 109.47014 * 215.67819 * 21 19 17 24 24 H 1.48503 * 109.47223 * 335.67725 * 21 19 17 25 25 H 1.09004 * 109.47103 * 300.00684 * 1 2 3 26 26 H 1.09000 * 109.46965 * 59.99970 * 1 2 3 27 27 H 1.09000 * 109.47114 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47513 * 239.99647 * 2 1 3 29 29 H 1.09002 * 109.47033 * 59.99353 * 3 2 1 30 30 H 1.08999 * 109.47472 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46542 * 300.00144 * 3 2 1 32 32 H 1.07999 * 125.44246 * 180.02562 * 6 5 4 33 33 H 1.07999 * 127.02340 * 179.97438 * 7 6 5 34 34 H 0.97005 * 120.00403 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.46905 * 300.00437 * 12 11 9 36 36 H 1.09000 * 109.46681 * 59.99419 * 12 11 9 37 37 H 1.09009 * 109.47203 * 299.99942 * 13 12 11 38 38 H 1.09006 * 109.47415 * 59.99613 * 13 12 11 39 39 H 1.08996 * 109.47238 * 300.00001 * 14 13 12 40 40 H 1.09003 * 109.47322 * 60.00046 * 14 13 12 41 41 H 1.08998 * 109.47285 * 85.64623 * 16 15 14 42 42 H 1.08998 * 109.46832 * 205.65306 * 16 15 14 43 43 H 1.09000 * 109.46931 * 325.65220 * 16 15 14 44 44 H 0.97009 * 119.99848 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7815 -0.3565 2.4947 6 6 2.3762 -1.1980 3.3547 7 6 3.0397 -2.1371 2.6630 8 6 2.8249 -1.8206 1.2435 9 6 3.3529 -2.5519 0.0778 10 8 3.0916 -2.1723 -1.0476 11 7 4.1253 -3.6413 0.2592 12 6 4.6498 -4.3686 -0.8994 13 6 5.4893 -5.5543 -0.4200 14 6 6.0365 -6.3142 -1.6299 15 7 6.8410 -7.4492 -1.1709 16 6 6.2092 -8.7520 -0.9472 17 6 8.1834 -7.2926 -0.9508 18 1 8.6565 -7.7937 -0.1193 19 6 8.9363 -6.4895 -1.7966 20 7 10.0689 -5.9690 -1.3742 21 14 8.3419 -6.1477 -3.5342 22 1 7.6103 -4.8557 -3.5619 23 1 9.5078 -6.0762 -4.4512 24 1 7.4350 -7.2396 -3.9709 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9564 0.8899 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 2.3276 -1.1308 4.4315 33 1 3.6181 -2.9549 3.0667 34 1 4.3341 -3.9439 1.1569 35 1 3.8203 -4.7319 -1.5062 36 1 5.2715 -3.7012 -1.4962 37 1 6.3188 -5.1905 0.1866 38 1 4.8680 -6.2217 0.1772 39 1 5.2068 -6.6779 -2.2361 40 1 6.6578 -5.6470 -2.2274 41 1 6.1734 -9.3044 -1.8861 42 1 6.7882 -9.3157 -0.2157 43 1 5.1959 -8.6049 -0.5733 44 1 10.5952 -5.4081 -1.9654 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752124866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:13 Heat of formation + Delta-G solvation = -14.482583 kcal Electronic energy + Delta-G solvation = -23470.605047 eV Core-core repulsion = 20004.083685 eV Total energy + Delta-G solvation = -3466.521362 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.78741 -39.32305 -36.53286 -35.75188 -34.65341 -33.10170 -31.76622 -30.68376 -29.28777 -27.42451 -26.48573 -25.59442 -23.41163 -22.70273 -21.72943 -20.83875 -20.49617 -19.65048 -17.85821 -16.76407 -16.40339 -15.96626 -15.65802 -15.59669 -15.09968 -14.93931 -14.67109 -14.07471 -13.76081 -13.50685 -13.34933 -13.25072 -13.06710 -12.88856 -12.71174 -12.45845 -12.15090 -11.72538 -11.52235 -11.48640 -11.35400 -11.19951 -11.16572 -10.90952 -10.52115 -10.40083 -9.98771 -9.84785 -9.74854 -9.53584 -8.97639 -8.71591 -8.51885 -6.83384 -6.01873 -3.43054 1.24627 1.87557 2.60250 3.31502 3.34772 3.38310 3.47578 3.53335 4.20340 4.52005 4.58734 4.69869 4.75466 4.85073 4.95626 5.12516 5.25887 5.34094 5.36026 5.41244 5.49603 5.54350 5.59180 5.67865 5.70693 5.84630 5.86874 5.96082 6.03400 6.05479 6.10916 6.19064 6.27394 6.33600 6.52459 6.65682 6.70261 6.76348 6.84953 6.92770 7.63082 8.04037 8.30613 8.35962 8.97131 9.69563 10.10993 11.13684 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.003133 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.642955 B = 8934.209534 C = 9278.939143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.036 4.036 3 C -0.146 4.146 4 C 0.085 3.915 5 O -0.174 6.174 6 C -0.042 4.042 7 C -0.187 4.187 8 C -0.242 4.242 9 C 0.586 3.414 10 O -0.546 6.546 11 N -0.716 5.716 12 C 0.119 3.881 13 C -0.146 4.146 14 C 0.143 3.857 15 N -0.613 5.613 16 C 0.124 3.876 17 C -0.273 4.273 18 H 0.078 0.922 19 C 0.037 3.963 20 N -0.898 5.898 21 Si 0.876 3.124 22 H -0.283 1.283 23 H -0.300 1.300 24 H -0.270 1.270 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.133 0.867 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.207 0.793 33 H 0.158 0.842 34 H 0.400 0.600 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.055 0.945 41 H 0.006 0.994 42 H 0.045 0.955 43 H 0.026 0.974 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.042 11.317 8.024 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.054 4.054 3 C -0.203 4.203 4 C 0.032 3.968 5 O -0.070 6.070 6 C -0.108 4.108 7 C -0.206 4.206 8 C -0.246 4.246 9 C 0.374 3.626 10 O -0.427 6.427 11 N -0.366 5.366 12 C -0.005 4.005 13 C -0.186 4.186 14 C 0.016 3.984 15 N -0.336 5.336 16 C -0.021 4.021 17 C -0.401 4.401 18 H 0.095 0.905 19 C -0.164 4.164 20 N -0.539 5.539 21 Si 0.706 3.294 22 H -0.211 1.211 23 H -0.228 1.228 24 H -0.194 1.194 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.150 0.850 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.224 0.776 33 H 0.175 0.825 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.213 11.850 7.265 23.714 hybrid contribution 0.178 -0.170 -0.268 0.364 sum -19.035 11.680 6.997 23.403 Atomic orbital electron populations 1.21838 0.93477 1.02478 1.02452 1.20344 0.96531 0.96410 0.92122 1.21842 1.01723 0.94310 1.02436 1.22833 0.95774 0.94191 0.83988 1.83738 1.59810 1.48263 1.15182 1.23849 0.99563 0.91832 0.95520 1.22907 1.04193 1.02098 0.91444 1.21221 1.08374 1.01116 0.93933 1.17217 0.78075 0.79962 0.87331 1.90695 1.59925 1.67560 1.24473 1.45902 1.51288 1.28653 1.10759 1.21496 0.97513 0.93853 0.87628 1.22388 0.99075 0.95389 1.01780 1.21030 0.93889 0.89946 0.93523 1.44045 1.05662 1.04005 1.79932 1.21081 0.95434 0.87701 0.97866 1.18783 0.82280 1.29969 1.09093 0.90451 1.25479 0.95177 0.98026 0.97721 1.69880 1.15821 1.32512 1.35705 0.86948 0.77442 0.78152 0.86899 1.21125 1.22808 1.19434 0.92335 0.91374 0.92231 0.84984 0.92329 0.92128 0.91369 0.77613 0.82462 0.76521 0.91732 0.91426 0.90525 0.92231 0.94108 0.92694 0.97536 0.93661 0.95497 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.18 37.16 0.34 -0.93 16 2 C -0.04 -0.39 3.25 -91.77 -0.30 -0.69 16 3 C -0.15 -1.33 9.18 37.16 0.34 -0.99 16 4 C 0.09 1.03 5.88 -34.96 -0.21 0.82 16 5 O -0.17 -1.86 10.52 7.66 0.08 -1.78 16 6 C -0.04 -0.36 12.03 29.30 0.35 -0.01 16 7 C -0.19 -1.89 10.60 -37.45 -0.40 -2.29 16 8 C -0.24 -3.16 6.31 -103.27 -0.65 -3.82 16 9 C 0.59 9.07 7.81 -12.54 -0.10 8.97 16 10 O -0.55 -9.84 14.50 5.27 0.08 -9.76 16 11 N -0.72 -10.35 5.55 -61.40 -0.34 -10.69 16 12 C 0.12 1.94 5.67 -4.04 -0.02 1.92 16 13 C -0.15 -2.60 5.65 -26.74 -0.15 -2.75 16 14 C 0.14 3.03 4.53 -4.04 -0.02 3.01 16 15 N -0.61 -14.56 2.47 -181.12 -0.45 -15.01 16 16 C 0.12 2.47 10.70 59.85 0.64 3.11 16 17 C -0.27 -7.61 9.88 -15.06 -0.15 -7.75 16 18 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 19 C 0.04 1.06 5.29 -17.43 -0.09 0.97 16 20 N -0.90 -27.30 13.97 55.49 0.78 -26.53 16 21 Si 0.88 22.36 25.10 -169.99 -4.27 18.09 16 22 H -0.28 -7.03 6.68 56.52 0.38 -6.65 16 23 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.13 1.72 5.52 -51.93 -0.29 1.44 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.16 1.25 7.74 -52.49 -0.41 0.84 16 34 H 0.40 4.85 7.64 -40.82 -0.31 4.54 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 40 H 0.06 1.30 3.38 -51.93 -0.18 1.12 16 41 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 42 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 43 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -33.08 361.43 -6.18 -39.26 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.09 Total: 1.40 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -0.41 Total: -0.43 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.01 Total: -52.22 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.16 Total: -11.55 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.27 Total: 18.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.08 -6.18 -39.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752124866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.778 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds