Wall clock time and date at job start Tue Mar 31 2020 06:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47484 * 2 1 4 4 C 1.50706 * 109.47168 * 119.99701 * 2 1 3 5 5 O 1.33650 * 125.79892 * 300.02575 * 4 2 1 6 6 C 1.34216 * 110.90818 * 179.97438 * 5 4 2 7 7 C 1.34180 * 109.12551 * 359.97438 * 6 5 4 8 8 C 1.36415 * 125.80475 * 120.31490 * 4 2 1 9 9 C 1.47386 * 127.18825 * 0.05907 * 8 4 2 10 10 O 1.21608 * 120.00351 * 0.17372 * 9 8 4 11 11 N 1.34773 * 119.99619 * 180.17280 * 9 8 4 12 12 C 1.46504 * 120.00219 * 179.97438 * 11 9 8 13 13 C 1.52991 * 109.47460 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47229 * 179.97438 * 13 12 11 15 15 N 1.46504 * 109.47284 * 179.97438 * 14 13 12 16 16 C 1.46503 * 119.99876 * 90.00144 * 15 14 13 17 17 C 1.36935 * 120.00351 * 270.00037 * 15 14 13 18 18 H 1.07994 * 120.00247 * 142.03671 * 17 15 14 19 19 C 1.38821 * 120.00009 * 322.03745 * 17 15 14 20 20 N 1.31611 * 119.99871 * 157.01595 * 19 17 15 21 21 Si 1.86799 * 119.99710 * 337.02175 * 19 17 15 22 22 H 1.48503 * 109.47254 * 95.67957 * 21 19 17 23 23 H 1.48505 * 109.47014 * 215.67819 * 21 19 17 24 24 H 1.48503 * 109.47223 * 335.67725 * 21 19 17 25 25 H 1.09004 * 109.47103 * 300.00684 * 1 2 3 26 26 H 1.09000 * 109.46965 * 59.99970 * 1 2 3 27 27 H 1.09000 * 109.47114 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47513 * 239.99647 * 2 1 3 29 29 H 1.09002 * 109.47033 * 59.99353 * 3 2 1 30 30 H 1.08999 * 109.47472 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46542 * 300.00144 * 3 2 1 32 32 H 1.07999 * 125.44246 * 180.02562 * 6 5 4 33 33 H 1.07999 * 127.02340 * 179.97438 * 7 6 5 34 34 H 0.97005 * 120.00403 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.46905 * 300.00437 * 12 11 9 36 36 H 1.09000 * 109.46681 * 59.99419 * 12 11 9 37 37 H 1.09009 * 109.47203 * 299.99942 * 13 12 11 38 38 H 1.09006 * 109.47415 * 59.99613 * 13 12 11 39 39 H 1.08996 * 109.47238 * 300.00001 * 14 13 12 40 40 H 1.09003 * 109.47322 * 60.00046 * 14 13 12 41 41 H 1.08998 * 109.47285 * 85.64623 * 16 15 14 42 42 H 1.08998 * 109.46832 * 205.65306 * 16 15 14 43 43 H 1.09000 * 109.46931 * 325.65220 * 16 15 14 44 44 H 0.97009 * 119.99848 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7815 -0.3565 2.4947 6 6 2.3762 -1.1980 3.3547 7 6 3.0397 -2.1371 2.6630 8 6 2.8249 -1.8206 1.2435 9 6 3.3529 -2.5519 0.0778 10 8 3.0916 -2.1723 -1.0476 11 7 4.1253 -3.6413 0.2592 12 6 4.6498 -4.3686 -0.8994 13 6 5.4893 -5.5543 -0.4200 14 6 6.0365 -6.3142 -1.6299 15 7 6.8410 -7.4492 -1.1709 16 6 6.2092 -8.7520 -0.9472 17 6 8.1834 -7.2926 -0.9508 18 1 8.6565 -7.7937 -0.1193 19 6 8.9363 -6.4895 -1.7966 20 7 10.0689 -5.9690 -1.3742 21 14 8.3419 -6.1477 -3.5342 22 1 7.6103 -4.8557 -3.5619 23 1 9.5078 -6.0762 -4.4512 24 1 7.4350 -7.2396 -3.9709 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9564 0.8899 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 2.3276 -1.1308 4.4315 33 1 3.6181 -2.9549 3.0667 34 1 4.3341 -3.9439 1.1569 35 1 3.8203 -4.7319 -1.5062 36 1 5.2715 -3.7012 -1.4962 37 1 6.3188 -5.1905 0.1866 38 1 4.8680 -6.2217 0.1772 39 1 5.2068 -6.6779 -2.2361 40 1 6.6578 -5.6470 -2.2274 41 1 6.1734 -9.3044 -1.8861 42 1 6.7882 -9.3157 -0.2157 43 1 5.1959 -8.6049 -0.5733 44 1 10.5952 -5.4081 -1.9654 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752124866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:12 Heat of formation + Delta-G solvation = -36.155114 kcal Electronic energy + Delta-G solvation = -23471.544839 eV Core-core repulsion = 20004.083685 eV Total energy + Delta-G solvation = -3467.461153 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.60434 -40.53531 -38.21518 -36.65976 -35.99113 -34.11202 -33.72857 -32.16234 -30.10094 -28.17537 -28.12234 -27.27128 -24.64734 -23.46822 -23.17800 -22.52714 -21.53913 -20.65162 -18.85126 -18.66706 -17.43681 -17.22469 -17.03869 -16.79653 -16.46911 -15.94874 -15.73601 -15.45898 -15.23063 -14.95983 -14.71959 -14.50556 -14.08274 -14.03424 -13.98070 -13.61642 -13.38193 -13.10253 -12.97419 -12.71253 -12.68865 -12.40975 -12.26056 -12.23408 -12.17119 -11.99586 -11.76376 -11.40284 -10.99101 -10.86539 -10.64737 -10.17010 -9.56922 -8.78227 -8.23062 -5.60289 0.29671 1.11673 1.29391 1.39314 1.50034 1.78829 2.21437 2.27970 2.39907 3.02354 3.41146 3.46555 3.72191 3.81779 3.99087 4.03128 4.09959 4.16523 4.34347 4.36930 4.51161 4.55278 4.65564 4.69988 4.71370 4.76230 4.76728 4.85882 4.87723 4.94760 5.01951 5.11297 5.13655 5.20877 5.24925 5.25807 5.32265 5.38085 5.46647 5.92733 6.03180 6.15002 6.50247 6.97569 7.14767 7.61580 8.03948 8.96556 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.003133 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.642955 B = 8934.209534 C = 9278.939143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.041 4.041 3 C -0.141 4.141 4 C 0.080 3.920 5 O -0.175 6.175 6 C -0.028 4.028 7 C -0.200 4.200 8 C -0.271 4.271 9 C 0.582 3.418 10 O -0.579 6.579 11 N -0.709 5.709 12 C 0.129 3.871 13 C -0.127 4.127 14 C 0.135 3.865 15 N -0.627 5.627 16 C 0.122 3.878 17 C -0.261 4.261 18 H 0.044 0.956 19 C -0.016 4.016 20 N -0.945 5.945 21 Si 0.936 3.064 22 H -0.276 1.276 23 H -0.307 1.307 24 H -0.260 1.260 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.251 0.749 33 H 0.177 0.823 34 H 0.412 0.588 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.030 0.970 41 H 0.014 0.986 42 H 0.042 0.958 43 H 0.062 0.938 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.635 11.646 8.914 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.059 4.059 3 C -0.198 4.198 4 C 0.027 3.973 5 O -0.071 6.071 6 C -0.092 4.092 7 C -0.219 4.219 8 C -0.275 4.275 9 C 0.371 3.629 10 O -0.462 6.462 11 N -0.360 5.360 12 C 0.005 3.995 13 C -0.167 4.167 14 C 0.009 3.991 15 N -0.351 5.351 16 C -0.023 4.023 17 C -0.390 4.390 18 H 0.062 0.938 19 C -0.213 4.213 20 N -0.589 5.589 21 Si 0.765 3.235 22 H -0.203 1.203 23 H -0.236 1.236 24 H -0.184 1.184 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.267 0.733 33 H 0.194 0.806 34 H 0.249 0.751 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.032 0.968 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.846 12.157 8.181 26.305 hybrid contribution 0.942 -0.309 -0.426 1.079 sum -20.904 11.848 7.755 25.249 Atomic orbital electron populations 1.21806 0.91847 1.02291 1.03703 1.20334 0.97882 0.96863 0.90816 1.21818 1.00785 0.93498 1.03734 1.23022 0.95463 0.93995 0.84864 1.83761 1.59888 1.48640 1.14794 1.24711 0.97433 0.90196 0.96902 1.23164 1.05304 1.03489 0.89971 1.21229 1.09766 1.01985 0.94554 1.17604 0.77669 0.79876 0.87721 1.90677 1.61157 1.68407 1.25956 1.45754 1.50961 1.28431 1.10856 1.21241 0.97220 0.92988 0.88095 1.22100 0.98612 0.95830 1.00165 1.21136 0.93965 0.89211 0.94797 1.44208 1.04503 1.06314 1.80118 1.21214 0.96905 0.85836 0.98299 1.18697 0.84370 1.28400 1.07578 0.93804 1.26042 0.95556 0.98718 1.01021 1.69992 1.17634 1.34372 1.36876 0.85962 0.76735 0.78571 0.82213 1.20293 1.23566 1.18382 0.91265 0.89917 0.93113 0.87609 0.91203 0.93544 0.89879 0.73300 0.80589 0.75114 0.90842 0.93624 0.92956 0.89869 0.91304 0.95215 0.96816 0.93936 0.91961 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.18 71.98 0.66 -1.61 16 2 C -0.04 -0.87 3.25 -11.54 -0.04 -0.90 16 3 C -0.14 -2.45 9.18 71.98 0.66 -1.79 16 4 C 0.08 1.86 5.88 25.26 0.15 2.01 16 5 O -0.18 -3.36 10.52 4.48 0.05 -3.32 16 6 C -0.03 -0.39 12.03 66.89 0.80 0.41 16 7 C -0.20 -3.62 10.60 23.65 0.25 -3.37 16 8 C -0.27 -6.89 6.31 -18.99 -0.12 -7.01 16 9 C 0.58 17.96 7.81 86.65 0.68 18.63 16 10 O -0.58 -21.29 14.50 -4.05 -0.06 -21.35 16 11 N -0.71 -19.94 5.55 -466.42 -2.59 -22.53 16 12 C 0.13 4.10 5.67 86.38 0.49 4.59 16 13 C -0.13 -4.32 5.65 30.59 0.17 -4.15 16 14 C 0.13 5.47 4.53 86.38 0.39 5.86 16 15 N -0.63 -28.91 2.47 -726.94 -1.79 -30.71 16 16 C 0.12 4.52 10.70 127.77 1.37 5.89 16 17 C -0.26 -14.66 9.88 84.04 0.83 -13.83 16 18 H 0.04 2.72 8.06 -2.91 -0.02 2.69 16 19 C -0.02 -0.96 5.29 84.87 0.45 -0.51 16 20 N -0.94 -59.02 13.97 21.65 0.30 -58.72 16 21 Si 0.94 46.67 25.10 68.60 1.72 48.39 16 22 H -0.28 -13.25 6.68 99.48 0.66 -12.59 16 23 H -0.31 -15.50 7.11 99.48 0.71 -14.79 16 24 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 25 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.11 2.85 5.52 -2.39 -0.01 2.84 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.25 1.08 8.06 -2.91 -0.02 1.05 16 33 H 0.18 2.35 7.74 -2.91 -0.02 2.33 16 34 H 0.41 9.44 7.64 -92.70 -0.71 8.74 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 39 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 40 H 0.03 1.37 3.38 -2.39 -0.01 1.36 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.04 1.58 8.00 -2.39 -0.02 1.56 16 43 H 0.06 1.87 8.10 -2.39 -0.02 1.86 16 44 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -73.29 361.43 4.61 -68.68 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.24 Total: 15.35 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 6.75 Total: 4.21 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -4.08 Total: -111.95 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.01 Total: -24.67 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.72 Total: 48.39 kcal Total: -73.29 4.61 -68.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752124866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.521 kcal (2) G-P(sol) polarization free energy of solvation -73.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds