Wall clock time and date at job start Tue Mar 31 2020 07:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 120.00156 * 2 1 4 4 C 1.52994 * 109.47092 * 239.99681 * 3 2 1 5 5 O 1.42901 * 109.47257 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.46956 * 119.99537 * 3 2 1 7 7 C 1.50704 * 109.47075 * 179.97438 * 6 3 2 8 8 O 1.21273 * 119.99914 * 0.02562 * 7 6 3 9 9 N 1.34776 * 119.99678 * 180.02562 * 7 6 3 10 10 C 1.47167 * 120.70351 * 180.02562 * 9 7 6 11 11 C 1.53893 * 108.03290 * 132.78267 * 10 9 7 12 12 H 1.08997 * 112.09750 * 181.90505 * 11 10 9 13 13 C 1.54549 * 107.82719 * 306.49713 * 11 10 9 14 14 C 1.54833 * 104.74067 * 88.94352 * 13 11 10 15 15 C 1.54542 * 104.74726 * 0.02562 * 14 13 11 16 16 H 1.09002 * 112.68423 * 146.80719 * 15 14 13 17 17 C 1.47159 * 120.71542 * 0.02562 * 9 7 6 18 18 N 1.48302 * 107.20468 * 58.35347 * 11 10 9 19 19 C 1.36935 * 128.07840 * 106.71316 * 18 11 10 20 20 H 1.07997 * 120.00382 * 206.63619 * 19 18 11 21 21 C 1.38813 * 120.00008 * 26.63190 * 19 18 11 22 22 N 1.31617 * 120.00262 * 195.70515 * 21 19 18 23 23 Si 1.86806 * 119.99979 * 15.70375 * 21 19 18 24 24 H 1.48507 * 109.46964 * 269.11182 * 23 21 19 25 25 H 1.48498 * 109.47005 * 29.10694 * 23 21 19 26 26 H 1.48497 * 109.47513 * 149.11122 * 23 21 19 27 27 H 1.07994 * 120.00484 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99395 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99395 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47401 * 300.00016 * 4 3 2 31 31 H 1.08998 * 109.47311 * 60.00323 * 4 3 2 32 32 H 1.09000 * 109.47305 * 180.02562 * 4 3 2 33 33 H 0.96699 * 114.00036 * 59.99657 * 5 3 2 34 34 H 1.09002 * 109.46935 * 60.00352 * 6 3 2 35 35 H 1.08993 * 109.47350 * 300.00260 * 6 3 2 36 36 H 1.08997 * 109.75173 * 13.14790 * 10 9 7 37 37 H 1.09002 * 109.78828 * 252.43172 * 10 9 7 38 38 H 1.08991 * 110.36600 * 207.90895 * 13 11 10 39 39 H 1.09002 * 110.36435 * 330.22605 * 13 11 10 40 40 H 1.09005 * 110.30641 * 241.24783 * 14 13 11 41 41 H 1.09000 * 110.61160 * 118.91131 * 14 13 11 42 42 H 1.08999 * 109.74755 * 346.85424 * 17 9 7 43 43 H 1.09006 * 109.74997 * 107.58621 * 17 9 7 44 44 H 0.97004 * 119.99992 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9432 1.3860 -1.2492 5 8 1.1350 2.3913 0.0006 6 6 2.9431 1.3861 1.2493 7 6 3.6972 2.6909 1.2490 8 8 3.5456 3.4786 0.3395 9 7 4.5399 2.9824 2.2596 10 6 5.2836 4.2522 2.2754 11 6 5.1437 4.8689 3.6783 12 1 5.6451 5.8338 3.7540 13 6 3.6365 4.9529 4.0100 14 6 3.3037 3.5958 4.6769 15 6 4.6417 2.8226 4.6846 16 1 4.7470 2.1732 5.5537 17 6 4.7361 2.0378 3.3709 18 7 5.6790 3.8817 4.6469 19 6 6.8584 3.9332 5.3407 20 1 7.3355 3.0197 5.6634 21 6 7.4409 5.1598 5.6292 22 7 8.6992 5.2173 6.0108 23 14 6.4388 6.7288 5.4758 24 1 6.5900 7.2807 4.1055 25 1 5.0074 6.4291 5.7336 26 1 6.9224 7.7239 6.4664 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 3.6516 0.5575 -1.2491 31 1 2.3166 1.3283 -2.1392 32 1 3.4886 2.3298 -1.2490 33 1 0.5440 2.4030 0.7658 34 1 3.6514 0.5576 1.2493 35 1 2.3165 1.3284 2.1392 36 1 4.8682 4.9316 1.5312 37 1 6.3355 4.0665 2.0580 38 1 3.4452 5.7747 4.7000 39 1 3.0538 5.0791 3.0976 40 1 2.5583 3.0588 4.0902 41 1 2.9471 3.7462 5.6959 42 1 3.9628 1.2702 3.3426 43 1 5.7194 1.5741 3.2909 44 1 9.1061 6.0744 6.2128 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753304663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:18 Heat of formation + Delta-G solvation = -35.154027 kcal Electronic energy + Delta-G solvation = -25545.545059 eV Core-core repulsion = 22078.127316 eV Total energy + Delta-G solvation = -3467.417743 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82866 -40.18808 -38.48534 -35.51677 -34.29784 -33.89813 -32.82576 -31.86879 -31.72082 -29.36025 -27.49498 -25.68008 -25.30742 -23.59061 -21.82243 -21.37382 -20.53734 -20.06069 -18.65227 -18.15521 -17.70604 -17.42529 -16.88507 -16.52455 -15.95315 -15.70030 -15.35184 -15.17036 -15.08725 -14.77069 -14.29363 -14.21349 -13.80984 -13.68413 -13.39044 -13.16250 -13.07073 -13.04291 -12.84980 -12.61275 -12.53470 -12.32579 -12.18813 -11.93374 -11.76681 -11.59421 -11.45540 -11.26262 -11.08171 -10.81093 -10.42798 -10.26293 -9.75053 -8.88692 -8.18464 -5.50642 1.25888 1.36399 1.37274 1.45880 1.78154 2.09289 2.39055 3.00109 3.21510 3.36374 3.59428 3.80669 3.87497 3.91236 4.04326 4.08564 4.14245 4.18237 4.31388 4.43010 4.46407 4.59256 4.61886 4.64228 4.73967 4.81059 4.85411 4.88904 4.90901 4.97748 5.01074 5.07611 5.19932 5.23084 5.35099 5.40238 5.60582 5.72133 5.73257 5.87853 6.12985 6.62301 6.69908 6.92873 7.34600 7.49204 8.18725 9.01757 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.004413 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.036078 B = 6342.772098 C = 6395.838406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.189 4.189 3 C 0.176 3.824 4 C -0.149 4.149 5 O -0.562 6.562 6 C -0.155 4.155 7 C 0.510 3.490 8 O -0.567 6.567 9 N -0.597 5.597 10 C 0.113 3.887 11 C 0.112 3.888 12 H 0.055 0.945 13 C -0.124 4.124 14 C -0.112 4.112 15 C 0.128 3.872 16 H 0.098 0.902 17 C 0.101 3.899 18 N -0.615 5.615 19 C -0.216 4.216 20 H 0.065 0.935 21 C -0.033 4.033 22 N -0.960 5.960 23 Si 0.937 3.063 24 H -0.288 1.288 25 H -0.243 1.243 26 H -0.315 1.315 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.380 0.620 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.124 0.876 43 H 0.056 0.944 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.115 -12.597 -8.640 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.207 4.207 3 C 0.135 3.865 4 C -0.206 4.206 5 O -0.369 6.369 6 C -0.195 4.195 7 C 0.300 3.700 8 O -0.447 6.447 9 N -0.330 5.330 10 C -0.012 4.012 11 C 0.006 3.994 12 H 0.072 0.928 13 C -0.163 4.163 14 C -0.151 4.151 15 C 0.022 3.978 16 H 0.116 0.884 17 C -0.022 4.022 18 N -0.339 5.339 19 C -0.345 4.345 20 H 0.082 0.918 21 C -0.228 4.228 22 N -0.607 5.607 23 Si 0.769 3.231 24 H -0.216 1.216 25 H -0.167 1.167 26 H -0.244 1.244 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.151 0.849 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.229 0.771 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.142 0.858 43 H 0.074 0.926 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.655 -11.973 -9.535 23.366 hybrid contribution 0.416 1.253 0.639 1.467 sum -17.239 -10.720 -8.896 22.163 Atomic orbital electron populations 1.24022 0.95939 1.03006 0.98411 1.23551 0.96872 0.98100 1.02213 1.19869 0.87897 0.84775 0.93968 1.21918 0.99192 1.03279 0.96164 1.86700 1.50680 1.49934 1.49553 1.22459 1.00563 0.95088 1.01385 1.21099 0.78910 0.89365 0.80652 1.90645 1.65822 1.51761 1.36425 1.48130 1.42909 1.18824 1.23142 1.21913 0.95018 0.86659 0.97631 1.22295 0.94654 0.93023 0.89478 0.92789 1.22611 0.94488 0.98976 1.00235 1.22523 0.97017 0.94864 1.00683 1.22214 0.87809 0.91147 0.96618 0.88447 1.22442 1.02486 0.91447 0.85868 1.45486 1.19220 1.22993 1.46194 1.18522 0.95424 0.92834 1.27670 0.91766 1.25718 0.96761 1.00556 0.99731 1.69889 1.12477 1.25810 1.52500 0.85996 0.81176 0.80360 0.75579 1.21608 1.16736 1.24439 0.86638 0.88075 0.84949 0.90158 0.92786 0.92060 0.77140 0.85948 0.85954 0.90566 0.93900 0.92786 0.91097 0.89140 0.91400 0.85791 0.92559 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 13.93 67.77 0.94 -1.17 16 2 C -0.19 -2.51 8.77 25.64 0.22 -2.29 16 3 C 0.18 3.33 0.94 -11.54 -0.01 3.32 16 4 C -0.15 -3.37 8.50 71.98 0.61 -2.76 16 5 O -0.56 -12.72 10.85 -131.53 -1.43 -14.14 16 6 C -0.16 -2.69 3.31 29.85 0.10 -2.59 16 7 C 0.51 14.19 7.26 87.66 0.64 14.82 16 8 O -0.57 -20.33 12.42 14.44 0.18 -20.15 16 9 N -0.60 -17.94 2.25 -816.09 -1.84 -19.78 16 10 C 0.11 4.29 5.90 86.55 0.51 4.80 16 11 C 0.11 4.59 2.85 45.47 0.13 4.72 16 12 H 0.05 2.51 3.17 -2.39 -0.01 2.50 16 13 C -0.12 -4.19 5.99 31.75 0.19 -4.00 16 14 C -0.11 -3.08 6.21 31.74 0.20 -2.88 16 15 C 0.13 4.06 4.28 45.28 0.19 4.25 16 16 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 17 C 0.10 2.61 5.76 86.36 0.50 3.11 16 18 N -0.62 -26.91 2.52 -637.80 -1.60 -28.51 16 19 C -0.22 -11.70 10.76 84.03 0.90 -10.80 16 20 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 21 C -0.03 -1.90 5.49 84.86 0.47 -1.44 16 22 N -0.96 -59.93 13.97 21.65 0.30 -59.63 16 23 Si 0.94 46.44 24.67 68.60 1.69 48.14 16 24 H -0.29 -14.09 6.68 99.48 0.66 -13.43 16 25 H -0.24 -11.11 5.34 99.48 0.53 -10.58 16 26 H -0.31 -16.03 7.11 99.48 0.71 -15.33 16 27 H 0.12 1.00 8.06 -2.91 -0.02 0.98 16 28 H 0.10 1.27 6.41 -2.91 -0.02 1.25 16 29 H 0.13 1.31 8.06 -2.91 -0.02 1.28 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.84 5.51 -2.39 -0.01 1.83 16 33 H 0.38 5.81 8.05 -74.06 -0.60 5.21 16 34 H 0.12 1.62 8.06 -2.39 -0.02 1.60 16 35 H 0.12 1.46 7.59 -2.39 -0.02 1.44 16 36 H 0.08 2.92 7.11 -2.39 -0.02 2.91 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 1.90 6.82 -2.39 -0.02 1.88 16 39 H 0.07 2.26 7.84 -2.39 -0.02 2.24 16 40 H 0.09 1.88 7.83 -2.38 -0.02 1.86 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.12 1.96 6.09 -2.39 -0.01 1.95 16 43 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -73.19 331.56 3.09 -70.11 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.19 Total: 16.87 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 5.59 Total: 7.10 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -3.14 Total: -107.92 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -1.25 Total: -34.30 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.69 Total: 48.14 kcal Total: -73.19 3.09 -70.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753304663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.956 kcal (2) G-P(sol) polarization free energy of solvation -73.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds