Wall clock time and date at job start Tue Mar 31 2020 07:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99655 * 2 1 4 4 C 1.52998 * 109.46976 * 119.99864 * 3 2 1 5 5 O 1.42905 * 109.47077 * 0.02562 * 3 2 1 6 6 C 1.53000 * 109.47432 * 240.00235 * 3 2 1 7 7 C 1.50692 * 109.47136 * 56.49226 * 6 3 2 8 8 O 1.21280 * 120.00235 * 4.50211 * 7 6 3 9 9 N 1.34778 * 120.00363 * 184.49969 * 7 6 3 10 10 C 1.48432 * 120.83079 * 359.61856 * 9 7 6 11 11 C 1.53886 * 107.38097 * 132.53315 * 10 9 7 12 12 H 1.09000 * 112.09914 * 182.51127 * 11 10 9 13 13 C 1.54542 * 108.36649 * 306.86105 * 11 10 9 14 14 C 1.54276 * 104.84990 * 89.29837 * 13 11 10 15 15 C 1.54548 * 104.85270 * 359.97438 * 14 13 11 16 16 H 1.08997 * 112.18107 * 146.41026 * 15 14 13 17 17 C 1.47163 * 120.71440 * 180.02562 * 9 7 6 18 18 N 1.48309 * 107.20510 * 58.96694 * 11 10 9 19 19 C 1.36939 * 128.07999 * 106.11766 * 18 11 10 20 20 H 1.08005 * 119.99784 * 14.74814 * 19 18 11 21 21 C 1.38808 * 120.00253 * 194.75079 * 19 18 11 22 22 N 1.31614 * 119.99993 * 9.38001 * 21 19 18 23 23 Si 1.86800 * 120.00033 * 189.38756 * 21 19 18 24 24 H 1.48507 * 109.47109 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47612 * 119.99562 * 23 21 19 26 26 H 1.48502 * 109.47130 * 240.00022 * 23 21 19 27 27 H 1.08004 * 119.99715 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00548 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00548 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47383 * 184.55501 * 4 3 2 31 31 H 1.09000 * 109.47198 * 304.55336 * 4 3 2 32 32 H 1.08997 * 109.47303 * 64.55684 * 4 3 2 33 33 H 0.96697 * 113.99627 * 299.99501 * 5 3 2 34 34 H 1.09000 * 109.46750 * 296.49379 * 6 3 2 35 35 H 1.09000 * 109.47043 * 176.49879 * 6 3 2 36 36 H 1.09007 * 109.56625 * 13.38895 * 10 9 7 37 37 H 1.09002 * 110.57797 * 252.25194 * 10 9 7 38 38 H 1.09002 * 110.36032 * 208.13571 * 13 11 10 39 39 H 1.08996 * 110.36635 * 330.44726 * 13 11 10 40 40 H 1.09006 * 110.36151 * 241.15564 * 14 13 11 41 41 H 1.08996 * 110.46043 * 118.89076 * 14 13 11 42 42 H 1.08997 * 109.74732 * 107.60954 * 17 9 7 43 43 H 1.08998 * 109.78852 * 346.90161 * 17 9 7 44 44 H 0.97001 * 119.99940 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9430 1.3862 1.2493 5 8 1.1347 2.3913 0.0006 6 6 2.9430 1.3864 -1.2492 7 6 2.0868 1.2202 -2.4781 8 8 0.8818 1.1351 -2.3707 9 7 2.6601 1.1661 -3.6967 10 6 4.1322 1.2768 -3.8504 11 6 4.5825 0.1459 -4.7919 12 1 5.6643 0.1288 -4.9242 13 6 4.0408 -1.1920 -4.2397 14 6 2.6498 -1.3528 -4.8871 15 6 2.4768 -0.0970 -5.7713 16 1 1.9028 -0.3053 -6.6742 17 6 1.8389 1.0047 -4.9072 18 7 3.8638 0.3318 -6.0758 19 6 4.3639 0.7917 -7.2648 20 1 5.4319 0.8443 -7.4172 21 6 3.4984 1.1905 -8.2740 22 7 2.2100 1.3030 -8.0297 23 14 4.1621 1.5673 -9.9790 24 1 5.6335 1.3663 -9.9929 25 1 3.5287 0.6593 -10.9687 26 1 3.8521 2.9764 -10.3306 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5401 0.9352 -0.0004 29 1 1.8501 -0.9352 0.0004 30 1 3.4257 2.3627 1.2911 31 1 2.3264 1.2475 2.1373 32 1 3.7035 0.6064 1.2094 33 1 0.5432 2.4033 -0.7643 34 1 3.6918 0.5949 -1.2184 35 1 3.4402 2.3558 -1.2811 36 1 4.6107 1.1590 -2.8780 37 1 4.4011 2.2422 -4.2793 38 1 4.6929 -2.0149 -4.5326 39 1 3.9511 -1.1459 -3.1544 40 1 1.8759 -1.3857 -4.1201 41 1 2.6158 -2.2548 -5.4980 42 1 1.8146 1.9418 -5.4633 43 1 0.8255 0.7148 -4.6297 44 1 1.6051 1.5813 -8.7351 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753304665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:22 Heat of formation + Delta-G solvation = -26.930285 kcal Electronic energy + Delta-G solvation = -25680.782489 eV Core-core repulsion = 22213.721354 eV Total energy + Delta-G solvation = -3467.061135 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.29312 -38.77562 -36.94368 -33.76916 -32.80901 -32.40629 -31.26501 -30.56556 -29.34566 -28.18864 -25.93655 -23.89872 -23.65333 -22.26905 -20.04878 -19.71107 -19.35060 -18.54179 -17.18983 -16.72956 -16.02723 -15.69241 -15.66346 -14.72417 -14.42178 -14.29738 -13.98969 -13.64666 -13.11855 -13.02611 -12.84391 -12.47695 -12.38953 -12.15998 -11.97006 -11.92089 -11.69343 -11.62124 -11.44480 -11.08325 -10.93731 -10.87033 -10.80631 -10.37568 -10.06405 -9.97169 -9.89489 -9.75553 -9.59686 -9.42754 -8.91637 -8.80239 -8.07041 -6.88854 -5.88203 -3.23933 2.53416 3.08006 3.32442 3.38951 3.41124 3.55758 4.36148 4.37789 4.73990 4.86943 4.87937 5.09467 5.28123 5.37390 5.42552 5.49952 5.56029 5.61612 5.62533 5.70404 5.76407 5.79937 5.83850 5.91864 6.06634 6.16087 6.18491 6.28905 6.36574 6.48580 6.59893 6.66648 6.76014 6.77774 6.83172 6.93878 6.99432 7.26709 7.46381 7.65916 7.84433 8.07065 8.09921 8.67501 9.01227 9.63585 10.39634 11.24625 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028992 B = 0.004411 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.555499 B = 6346.412000 C = 6446.544286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.188 4.188 3 C 0.179 3.821 4 C -0.133 4.133 5 O -0.565 6.565 6 C -0.166 4.166 7 C 0.508 3.492 8 O -0.559 6.559 9 N -0.591 5.591 10 C 0.094 3.906 11 C 0.132 3.868 12 H 0.077 0.923 13 C -0.121 4.121 14 C -0.136 4.136 15 C 0.168 3.832 16 H 0.118 0.882 17 C 0.113 3.887 18 N -0.584 5.584 19 C -0.228 4.228 20 H 0.077 0.923 21 C -0.002 4.002 22 N -0.912 5.912 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.388 0.612 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.452 -2.486 13.963 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.206 4.206 3 C 0.137 3.863 4 C -0.191 4.191 5 O -0.376 6.376 6 C -0.206 4.206 7 C 0.296 3.704 8 O -0.440 6.440 9 N -0.322 5.322 10 C -0.031 4.031 11 C 0.024 3.976 12 H 0.095 0.905 13 C -0.160 4.160 14 C -0.175 4.175 15 C 0.060 3.940 16 H 0.136 0.864 17 C -0.010 4.010 18 N -0.305 5.305 19 C -0.356 4.356 20 H 0.095 0.905 21 C -0.199 4.199 22 N -0.558 5.558 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.241 0.759 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.080 -2.286 14.252 14.583 hybrid contribution 0.154 0.071 -1.558 1.568 sum 2.234 -2.214 12.694 13.078 Atomic orbital electron populations 1.23583 0.95978 1.01492 0.97737 1.23210 0.96805 0.97760 1.02811 1.19775 0.88106 0.85232 0.93161 1.21700 0.98703 1.02430 0.96239 1.86374 1.51067 1.48841 1.51303 1.22431 0.99793 1.04522 0.93835 1.20401 0.88545 0.76885 0.84528 1.90563 1.14846 1.52486 1.86077 1.48548 1.07860 1.69456 1.06335 1.22776 0.79656 1.01252 0.99370 1.21951 0.96356 0.91935 0.87389 0.90473 1.22449 0.97347 0.98004 0.98206 1.22631 0.96047 0.99976 0.98868 1.21899 0.87744 0.88616 0.95693 0.86431 1.22393 0.93224 1.01964 0.83446 1.45189 1.05802 1.74471 1.05074 1.19040 0.91740 1.36021 0.88801 0.90511 1.24832 0.95769 1.00391 0.98958 1.69846 1.01969 1.51947 1.32072 0.86065 0.78008 0.77559 0.84169 1.20474 1.21651 1.21767 0.89127 0.88121 0.87628 0.91744 0.91758 0.91190 0.75880 0.88553 0.88469 0.91653 0.91347 0.92657 0.93142 0.92905 0.92912 0.90455 0.91317 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 12.63 29.02 0.37 -1.69 16 2 C -0.19 -2.48 7.44 -36.02 -0.27 -2.75 16 3 C 0.18 2.30 1.08 -91.77 -0.10 2.20 16 4 C -0.13 -1.36 8.82 37.16 0.33 -1.04 16 5 O -0.56 -8.40 11.93 -52.45 -0.63 -9.03 16 6 C -0.17 -2.14 3.48 -27.89 -0.10 -2.24 16 7 C 0.51 8.55 7.20 -10.99 -0.08 8.47 16 8 O -0.56 -10.50 11.41 -11.66 -0.13 -10.64 16 9 N -0.59 -10.71 2.26 -170.51 -0.39 -11.09 16 10 C 0.09 1.57 5.92 -2.52 -0.01 1.55 16 11 C 0.13 2.43 4.27 -65.66 -0.28 2.15 16 12 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.12 -2.03 6.19 -25.25 -0.16 -2.19 16 14 C -0.14 -2.58 6.19 -25.25 -0.16 -2.73 16 15 C 0.17 3.73 3.12 -65.65 -0.21 3.53 16 16 H 0.12 3.00 6.35 -51.93 -0.33 2.67 16 17 C 0.11 2.41 5.82 -3.23 -0.02 2.40 16 18 N -0.58 -13.45 2.80 -152.59 -0.43 -13.88 16 19 C -0.23 -5.84 10.37 -15.06 -0.16 -5.99 16 20 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 21 C 0.00 -0.06 5.42 -17.43 -0.09 -0.15 16 22 N -0.91 -24.82 10.43 55.49 0.58 -24.24 16 23 Si 0.91 20.96 29.56 -169.99 -5.03 15.93 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 27 H 0.09 1.11 8.06 -52.48 -0.42 0.69 16 28 H 0.10 1.42 6.41 -52.49 -0.34 1.08 16 29 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.39 6.04 5.76 45.56 0.26 6.30 16 34 H 0.10 1.07 7.38 -51.93 -0.38 0.69 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 0.85 6.05 -51.93 -0.31 0.53 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.76 7.86 -51.93 -0.41 0.35 16 40 H 0.05 0.99 7.84 -51.93 -0.41 0.58 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.08 1.91 7.85 -51.93 -0.41 1.50 16 43 H 0.07 1.49 7.11 -51.93 -0.37 1.13 16 44 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -28.19 337.69 -8.33 -36.52 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.47 Total: 9.81 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.93 Total: 1.52 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.23 Total: -49.21 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.76 Total: -19.67 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.19 -8.33 -36.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753304665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.588 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds