Wall clock time and date at job start Tue Mar 31 2020 07:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99655 * 2 1 4 4 C 1.52998 * 109.46976 * 119.99864 * 3 2 1 5 5 O 1.42905 * 109.47077 * 0.02562 * 3 2 1 6 6 C 1.53000 * 109.47432 * 240.00235 * 3 2 1 7 7 C 1.50692 * 109.47136 * 56.49226 * 6 3 2 8 8 O 1.21280 * 120.00235 * 4.50211 * 7 6 3 9 9 N 1.34778 * 120.00363 * 184.49969 * 7 6 3 10 10 C 1.48432 * 120.83079 * 359.61856 * 9 7 6 11 11 C 1.53886 * 107.38097 * 132.53315 * 10 9 7 12 12 H 1.09000 * 112.09914 * 182.51127 * 11 10 9 13 13 C 1.54542 * 108.36649 * 306.86105 * 11 10 9 14 14 C 1.54276 * 104.84990 * 89.29837 * 13 11 10 15 15 C 1.54548 * 104.85270 * 359.97438 * 14 13 11 16 16 H 1.08997 * 112.18107 * 146.41026 * 15 14 13 17 17 C 1.47163 * 120.71440 * 180.02562 * 9 7 6 18 18 N 1.48309 * 107.20510 * 58.96694 * 11 10 9 19 19 C 1.36939 * 128.07999 * 106.11766 * 18 11 10 20 20 H 1.08005 * 119.99784 * 14.74814 * 19 18 11 21 21 C 1.38808 * 120.00253 * 194.75079 * 19 18 11 22 22 N 1.31614 * 119.99993 * 9.38001 * 21 19 18 23 23 Si 1.86800 * 120.00033 * 189.38756 * 21 19 18 24 24 H 1.48507 * 109.47109 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47612 * 119.99562 * 23 21 19 26 26 H 1.48502 * 109.47130 * 240.00022 * 23 21 19 27 27 H 1.08004 * 119.99715 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00548 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00548 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47383 * 184.55501 * 4 3 2 31 31 H 1.09000 * 109.47198 * 304.55336 * 4 3 2 32 32 H 1.08997 * 109.47303 * 64.55684 * 4 3 2 33 33 H 0.96697 * 113.99627 * 299.99501 * 5 3 2 34 34 H 1.09000 * 109.46750 * 296.49379 * 6 3 2 35 35 H 1.09000 * 109.47043 * 176.49879 * 6 3 2 36 36 H 1.09007 * 109.56625 * 13.38895 * 10 9 7 37 37 H 1.09002 * 110.57797 * 252.25194 * 10 9 7 38 38 H 1.09002 * 110.36032 * 208.13571 * 13 11 10 39 39 H 1.08996 * 110.36635 * 330.44726 * 13 11 10 40 40 H 1.09006 * 110.36151 * 241.15564 * 14 13 11 41 41 H 1.08996 * 110.46043 * 118.89076 * 14 13 11 42 42 H 1.08997 * 109.74732 * 107.60954 * 17 9 7 43 43 H 1.08998 * 109.78852 * 346.90161 * 17 9 7 44 44 H 0.97001 * 119.99940 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9430 1.3862 1.2493 5 8 1.1347 2.3913 0.0006 6 6 2.9430 1.3864 -1.2492 7 6 2.0868 1.2202 -2.4781 8 8 0.8818 1.1351 -2.3707 9 7 2.6601 1.1661 -3.6967 10 6 4.1322 1.2768 -3.8504 11 6 4.5825 0.1459 -4.7919 12 1 5.6643 0.1288 -4.9242 13 6 4.0408 -1.1920 -4.2397 14 6 2.6498 -1.3528 -4.8871 15 6 2.4768 -0.0970 -5.7713 16 1 1.9028 -0.3053 -6.6742 17 6 1.8389 1.0047 -4.9072 18 7 3.8638 0.3318 -6.0758 19 6 4.3639 0.7917 -7.2648 20 1 5.4319 0.8443 -7.4172 21 6 3.4984 1.1905 -8.2740 22 7 2.2100 1.3030 -8.0297 23 14 4.1621 1.5673 -9.9790 24 1 5.6335 1.3663 -9.9929 25 1 3.5287 0.6593 -10.9687 26 1 3.8521 2.9764 -10.3306 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5401 0.9352 -0.0004 29 1 1.8501 -0.9352 0.0004 30 1 3.4257 2.3627 1.2911 31 1 2.3264 1.2475 2.1373 32 1 3.7035 0.6064 1.2094 33 1 0.5432 2.4033 -0.7643 34 1 3.6918 0.5949 -1.2184 35 1 3.4402 2.3558 -1.2811 36 1 4.6107 1.1590 -2.8780 37 1 4.4011 2.2422 -4.2793 38 1 4.6929 -2.0149 -4.5326 39 1 3.9511 -1.1459 -3.1544 40 1 1.8759 -1.3857 -4.1201 41 1 2.6158 -2.2548 -5.4980 42 1 1.8146 1.9418 -5.4633 43 1 0.8255 0.7148 -4.6297 44 1 1.6051 1.5813 -8.7351 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753304665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:21 Heat of formation + Delta-G solvation = -43.317425 kcal Electronic energy + Delta-G solvation = -25681.493089 eV Core-core repulsion = 22213.721354 eV Total energy + Delta-G solvation = -3467.771735 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66588 -40.10102 -38.22077 -35.36177 -34.16280 -33.84933 -32.54566 -31.85391 -31.05732 -29.27948 -27.46598 -25.46191 -25.30000 -23.30746 -21.47318 -21.21149 -20.54736 -20.04937 -18.61099 -17.99003 -17.48518 -17.06140 -16.92335 -16.52795 -15.70306 -15.61178 -15.46441 -15.02082 -14.65364 -14.43436 -14.25850 -13.58827 -13.55269 -13.44368 -13.24825 -13.13599 -13.00001 -12.91508 -12.76819 -12.71857 -12.56056 -12.51521 -11.96153 -11.89122 -11.77973 -11.48825 -11.42914 -11.12242 -11.02363 -10.83159 -10.61991 -10.00931 -9.64096 -8.69079 -7.85004 -5.20141 1.47506 1.49669 1.52073 1.58273 1.77408 2.16023 2.51221 3.35128 3.37542 3.49492 3.60502 3.87408 3.92093 4.10975 4.15642 4.26350 4.34633 4.37424 4.41941 4.48860 4.61455 4.69125 4.71552 4.78979 4.89232 4.92373 4.99410 5.00906 5.09161 5.12237 5.17832 5.18400 5.30896 5.35083 5.43033 5.55668 5.59200 5.76367 5.86343 5.99142 6.23813 6.63683 6.76663 7.06642 7.32558 7.74278 8.52652 9.26689 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028992 B = 0.004411 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.555499 B = 6346.412000 C = 6446.544286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.187 4.187 3 C 0.169 3.831 4 C -0.130 4.130 5 O -0.577 6.577 6 C -0.156 4.156 7 C 0.505 3.495 8 O -0.582 6.582 9 N -0.595 5.595 10 C 0.099 3.901 11 C 0.125 3.875 12 H 0.094 0.906 13 C -0.108 4.108 14 C -0.127 4.127 15 C 0.165 3.835 16 H 0.074 0.926 17 C 0.132 3.868 18 N -0.606 5.606 19 C -0.228 4.228 20 H 0.083 0.917 21 C -0.058 4.058 22 N -0.940 5.940 23 Si 0.969 3.031 24 H -0.265 1.265 25 H -0.298 1.298 26 H -0.299 1.299 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.381 0.619 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.033 0.967 43 H 0.055 0.945 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.208 -3.418 16.376 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.205 4.205 3 C 0.128 3.872 4 C -0.187 4.187 5 O -0.388 6.388 6 C -0.196 4.196 7 C 0.295 3.705 8 O -0.464 6.464 9 N -0.327 5.327 10 C -0.025 4.025 11 C 0.018 3.982 12 H 0.112 0.888 13 C -0.147 4.147 14 C -0.166 4.166 15 C 0.057 3.943 16 H 0.092 0.908 17 C 0.007 3.993 18 N -0.328 5.328 19 C -0.357 4.357 20 H 0.101 0.899 21 C -0.252 4.252 22 N -0.588 5.588 23 Si 0.799 3.201 24 H -0.189 1.189 25 H -0.225 1.225 26 H -0.227 1.227 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.142 0.858 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.233 0.767 34 H 0.148 0.852 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.879 -3.227 16.719 17.713 hybrid contribution -0.732 0.360 -2.254 2.397 sum 4.147 -2.867 14.466 15.319 Atomic orbital electron populations 1.23642 0.96628 1.01352 0.99025 1.23464 0.96726 0.98707 1.01637 1.20107 0.88070 0.84469 0.94506 1.21733 0.98703 1.03817 0.94441 1.86381 1.51466 1.49945 1.51010 1.22479 0.99560 1.06516 0.91006 1.21195 0.88755 0.75594 0.84986 1.90572 1.16383 1.53003 1.86412 1.48541 1.08314 1.70177 1.05640 1.22797 0.78629 0.99573 1.01465 1.22264 0.97019 0.93367 0.85527 0.88804 1.22391 0.95375 0.97290 0.99657 1.22492 0.97982 0.97840 0.98293 1.21701 0.87353 0.90444 0.94797 0.90829 1.21803 0.93308 0.99457 0.84699 1.45372 1.06484 1.74571 1.06329 1.19367 0.91999 1.34402 0.89952 0.89927 1.25518 0.96069 1.01578 1.02005 1.70049 1.02899 1.53616 1.32234 0.85154 0.78056 0.76401 0.80514 1.18948 1.22505 1.22655 0.88330 0.89476 0.85826 0.91226 0.92055 0.88392 0.76685 0.85209 0.86976 0.86500 0.93143 0.91348 0.90111 0.92729 0.93174 0.94882 0.92655 0.94560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.44 12.63 67.78 0.86 -3.58 16 2 C -0.19 -4.42 7.44 25.65 0.19 -4.23 16 3 C 0.17 3.81 1.08 -11.54 -0.01 3.80 16 4 C -0.13 -2.10 8.82 71.98 0.64 -1.46 16 5 O -0.58 -16.39 11.93 -132.51 -1.58 -17.97 16 6 C -0.16 -3.34 3.48 29.85 0.10 -3.24 16 7 C 0.50 15.84 7.20 87.65 0.63 16.47 16 8 O -0.58 -21.52 11.41 13.44 0.15 -21.37 16 9 N -0.60 -20.67 2.26 -811.75 -1.83 -22.50 16 10 C 0.10 2.97 5.92 86.31 0.51 3.48 16 11 C 0.13 4.23 4.27 45.47 0.19 4.42 16 12 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 13 C -0.11 -3.21 6.19 31.55 0.20 -3.01 16 14 C -0.13 -4.65 6.19 31.55 0.20 -4.45 16 15 C 0.16 7.49 3.12 45.46 0.14 7.63 16 16 H 0.07 3.99 6.35 -2.39 -0.02 3.97 16 17 C 0.13 5.85 5.82 86.55 0.50 6.35 16 18 N -0.61 -27.72 2.80 -636.67 -1.79 -29.51 16 19 C -0.23 -11.72 10.37 84.03 0.87 -10.85 16 20 H 0.08 4.05 7.85 -2.91 -0.02 4.03 16 21 C -0.06 -3.10 5.42 84.86 0.46 -2.64 16 22 N -0.94 -53.74 10.43 21.65 0.23 -53.51 16 23 Si 0.97 44.03 29.56 68.60 2.03 46.06 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 27 H 0.10 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.09 2.48 6.41 -2.91 -0.02 2.46 16 29 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.38 11.81 5.76 -74.06 -0.43 11.38 16 34 H 0.13 1.97 7.38 -2.39 -0.02 1.95 16 35 H 0.11 2.17 8.14 -2.39 -0.02 2.16 16 36 H 0.12 2.32 6.05 -2.38 -0.01 2.30 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 1.94 7.86 -2.39 -0.02 1.92 16 40 H 0.05 1.96 7.84 -2.38 -0.02 1.94 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.03 1.73 7.85 -2.39 -0.02 1.71 16 43 H 0.06 2.53 7.11 -2.39 -0.02 2.51 16 44 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -64.62 337.69 3.24 -61.38 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.56 Total: 28.74 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 5.48 Total: 8.68 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -3.39 Total: -105.52 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -1.43 Total: -39.34 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -64.62 3.24 -61.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753304665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.058 kcal (2) G-P(sol) polarization free energy of solvation -64.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds