Wall clock time and date at job start Tue Mar 31 2020 06:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47232 * 2 1 4 4 C 1.50696 * 109.47552 * 120.00160 * 2 1 3 5 5 O 1.33659 * 125.79953 * 300.33244 * 4 2 1 6 6 C 1.34220 * 110.90430 * 180.12930 * 5 4 2 7 7 C 1.34178 * 109.12703 * 359.57923 * 6 5 4 8 8 C 1.36417 * 125.80207 * 119.99523 * 4 2 1 9 9 C 1.47378 * 127.19362 * 0.02562 * 8 4 2 10 10 O 1.21608 * 119.99930 * 320.86294 * 9 8 4 11 11 N 1.34780 * 120.00017 * 140.85428 * 9 8 4 12 12 C 1.46502 * 119.99740 * 5.18058 * 11 9 8 13 13 C 1.46499 * 120.00003 * 185.17574 * 11 9 8 14 14 C 1.53003 * 109.46743 * 90.00141 * 13 11 9 15 15 N 1.46501 * 109.47115 * 179.97438 * 14 13 11 16 16 C 1.46504 * 119.99934 * 270.00727 * 15 14 13 17 17 C 1.36935 * 119.99976 * 89.99928 * 15 14 13 18 18 H 1.07997 * 119.99653 * 23.77974 * 17 15 14 19 19 C 1.38809 * 120.00094 * 203.77603 * 17 15 14 20 20 N 1.31616 * 120.00022 * 9.85791 * 19 17 15 21 21 Si 1.86800 * 119.99876 * 189.85441 * 19 17 15 22 22 H 1.48504 * 109.47045 * 90.00538 * 21 19 17 23 23 H 1.48502 * 109.47172 * 210.00089 * 21 19 17 24 24 H 1.48498 * 109.47549 * 330.00556 * 21 19 17 25 25 H 1.08999 * 109.46653 * 299.99428 * 1 2 3 26 26 H 1.08996 * 109.47079 * 59.99856 * 1 2 3 27 27 H 1.08998 * 109.46751 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46965 * 240.00263 * 2 1 3 29 29 H 1.09002 * 109.47310 * 300.00523 * 3 2 1 30 30 H 1.09005 * 109.46930 * 60.00242 * 3 2 1 31 31 H 1.08992 * 109.47413 * 179.97438 * 3 2 1 32 32 H 1.07998 * 125.43470 * 179.84954 * 6 5 4 33 33 H 1.07997 * 127.02241 * 180.24361 * 7 6 5 34 34 H 1.09006 * 109.46924 * 84.52244 * 12 11 9 35 35 H 1.09000 * 109.46823 * 204.52162 * 12 11 9 36 36 H 1.08998 * 109.47160 * 324.52274 * 12 11 9 37 37 H 1.08997 * 109.47025 * 210.00472 * 13 11 9 38 38 H 1.09000 * 109.46983 * 330.00557 * 13 11 9 39 39 H 1.08994 * 109.47541 * 300.00493 * 14 13 11 40 40 H 1.09008 * 109.46762 * 60.00269 * 14 13 11 41 41 H 1.08993 * 109.47339 * 94.98106 * 16 15 14 42 42 H 1.09004 * 109.46903 * 214.98592 * 16 15 14 43 43 H 1.08997 * 109.46902 * 334.97693 * 16 15 14 44 44 H 0.96999 * 120.00090 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 1.7770 -0.3599 2.4946 6 6 2.3760 -1.1986 3.3545 7 6 3.0401 -2.1371 2.6627 8 6 2.8200 -1.8242 1.2431 9 6 3.3410 -2.5603 0.0774 10 8 2.6403 -2.7201 -0.9036 11 7 4.5941 -3.0562 0.0986 12 6 5.3980 -2.9634 1.3199 13 6 5.1521 -3.6881 -1.0995 14 6 5.8589 -2.6316 -1.9510 15 7 6.4175 -3.2635 -3.1489 16 6 7.7797 -3.8023 -3.1253 17 6 5.6664 -3.3507 -4.2905 18 1 4.8563 -2.6565 -4.4582 19 6 5.9463 -4.3313 -5.2323 20 7 6.7981 -5.2934 -4.9474 21 14 5.1140 -4.2855 -6.9040 22 1 5.9425 -3.4930 -7.8479 23 1 4.9632 -5.6698 -7.4200 24 1 3.7748 -3.6572 -6.7733 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.1300 1.4425 0.0005 32 1 2.3273 -1.1315 4.4313 33 1 3.6183 -2.9551 3.0663 34 1 5.1596 -3.8004 1.9762 35 1 6.4564 -2.9943 1.0613 36 1 5.1760 -2.0264 1.8306 37 1 5.8676 -4.4560 -0.8055 38 1 4.3482 -4.1430 -1.6783 39 1 5.1435 -1.8637 -2.2450 40 1 6.6628 -2.1767 -1.3722 41 1 7.7452 -4.8674 -2.8962 42 1 8.2455 -3.6551 -4.0997 43 1 8.3617 -3.2852 -2.3625 44 1 6.9934 -5.9788 -5.6053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753870054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:16 Heat of formation + Delta-G solvation = 1.277203 kcal Electronic energy + Delta-G solvation = -24356.852662 eV Core-core repulsion = 20891.014696 eV Total energy + Delta-G solvation = -3465.837966 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.66595 -39.26433 -36.10979 -35.53607 -34.78535 -32.93895 -31.30706 -29.27691 -28.50329 -27.28882 -26.42067 -25.81828 -24.27265 -22.61615 -22.26653 -20.71748 -20.07779 -18.66785 -17.36975 -16.68451 -16.34332 -15.95051 -15.62484 -15.19614 -14.90088 -14.53826 -14.41655 -13.59626 -13.56098 -13.24965 -13.23481 -13.02346 -12.78056 -12.53035 -12.41544 -12.32334 -12.22515 -11.75503 -11.37298 -11.34849 -11.24748 -11.01522 -10.82098 -10.79709 -10.46807 -10.09710 -9.90460 -9.81707 -9.73546 -9.52618 -8.67006 -8.54953 -8.28253 -6.69082 -5.67061 -3.14084 1.47908 2.04833 2.73621 3.21268 3.44158 3.48657 3.50369 3.53708 4.33494 4.57269 4.70280 4.75535 4.90787 4.97842 5.21662 5.28155 5.35674 5.45656 5.49510 5.50496 5.54609 5.67397 5.71695 5.73267 5.77302 5.83516 5.89447 5.99063 6.10836 6.14785 6.23028 6.28904 6.33602 6.67075 6.75909 6.83427 6.98958 7.11235 7.40654 7.74899 7.76243 7.89279 8.45602 8.53291 9.30228 9.91551 10.40131 11.38094 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018803 B = 0.004061 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.736718 B = 6893.114522 C = 7822.031122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.026 4.026 3 C -0.147 4.147 4 C 0.072 3.928 5 O -0.175 6.175 6 C -0.045 4.045 7 C -0.188 4.188 8 C -0.229 4.229 9 C 0.581 3.419 10 O -0.531 6.531 11 N -0.605 5.605 12 C 0.080 3.920 13 C 0.093 3.907 14 C 0.145 3.855 15 N -0.599 5.599 16 C 0.164 3.836 17 C -0.251 4.251 18 H 0.070 0.930 19 C 0.002 3.998 20 N -0.911 5.911 21 Si 0.905 3.095 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.278 1.278 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.157 0.843 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.035 0.965 41 H 0.030 0.970 42 H 0.044 0.956 43 H -0.004 1.004 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.752 10.012 18.425 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.044 4.044 3 C -0.205 4.205 4 C 0.020 3.980 5 O -0.071 6.071 6 C -0.111 4.111 7 C -0.207 4.207 8 C -0.234 4.234 9 C 0.369 3.631 10 O -0.408 6.408 11 N -0.338 5.338 12 C -0.064 4.064 13 C -0.031 4.031 14 C 0.016 3.984 15 N -0.322 5.322 16 C 0.019 3.981 17 C -0.380 4.380 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.557 5.557 21 Si 0.735 3.265 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.203 1.203 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.222 0.778 33 H 0.175 0.825 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.014 0.986 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.192 10.011 17.849 21.692 hybrid contribution -0.109 -0.565 -0.565 0.806 sum -7.301 9.446 17.284 21.007 Atomic orbital electron populations 1.21809 0.93222 1.02753 1.02298 1.20065 0.96886 0.95985 0.91463 1.21873 1.01640 0.94418 1.02532 1.22670 0.96329 0.95110 0.83932 1.83716 1.59522 1.48711 1.15122 1.23817 0.99570 0.92330 0.95419 1.22967 1.04448 1.01985 0.91290 1.21280 1.07302 1.00598 0.94215 1.17301 0.81425 0.78785 0.85623 1.90812 1.57200 1.58294 1.34538 1.47891 1.13512 1.58681 1.13715 1.21901 0.96196 1.01317 0.86994 1.22651 0.98896 0.97324 0.84244 1.21112 0.95364 0.93999 0.87891 1.43958 1.11719 1.68964 1.07562 1.20828 0.83449 0.96245 0.97585 1.19264 1.13131 1.10369 0.95276 0.91270 1.25055 0.99388 0.95502 0.99608 1.70049 1.37724 1.13909 1.33985 0.86229 0.79341 0.76772 0.84123 1.21528 1.21720 1.20337 0.92385 0.91397 0.91932 0.86522 0.91309 0.92239 0.92158 0.77828 0.82550 0.93154 0.90957 0.91166 0.91401 0.89476 0.93663 0.94701 0.95174 0.93751 0.98591 0.93813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 2 C -0.03 -0.32 3.23 -91.77 -0.30 -0.62 16 3 C -0.15 -1.51 9.18 37.16 0.34 -1.17 16 4 C 0.07 0.96 5.88 -34.97 -0.21 0.76 16 5 O -0.17 -2.02 10.52 7.62 0.08 -1.94 16 6 C -0.05 -0.42 12.03 29.30 0.35 -0.06 16 7 C -0.19 -2.03 8.85 -37.45 -0.33 -2.37 16 8 C -0.23 -3.33 5.42 -103.27 -0.56 -3.89 16 9 C 0.58 10.43 7.34 -12.54 -0.09 10.34 16 10 O -0.53 -11.56 15.20 5.27 0.08 -11.48 16 11 N -0.60 -10.13 2.87 -182.86 -0.53 -10.66 16 12 C 0.08 0.95 9.11 59.85 0.55 1.50 16 13 C 0.09 1.88 5.75 -4.04 -0.02 1.85 16 14 C 0.14 3.16 6.03 -4.04 -0.02 3.13 16 15 N -0.60 -15.60 2.92 -181.12 -0.53 -16.13 16 16 C 0.16 4.08 9.01 59.85 0.54 4.62 16 17 C -0.25 -7.19 9.66 -15.06 -0.15 -7.33 16 18 H 0.07 1.99 7.84 -52.49 -0.41 1.58 16 19 C 0.00 0.07 5.16 -17.43 -0.09 -0.02 16 20 N -0.91 -27.02 10.59 55.49 0.59 -26.44 16 21 Si 0.91 22.68 29.56 -169.99 -5.03 17.65 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.12 1.77 6.44 -51.93 -0.33 1.43 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.21 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.16 1.37 6.70 -52.49 -0.35 1.02 16 34 H 0.05 0.51 7.43 -51.93 -0.39 0.13 16 35 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 36 H 0.07 0.75 5.94 -51.93 -0.31 0.44 16 37 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 38 H 0.09 2.09 7.36 -51.93 -0.38 1.71 16 39 H 0.04 1.04 8.04 -51.93 -0.42 0.62 16 40 H 0.03 0.68 7.86 -51.92 -0.41 0.27 16 41 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 42 H 0.04 1.19 7.30 -51.93 -0.38 0.81 16 43 H 0.00 -0.10 7.84 -51.93 -0.41 -0.50 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -33.63 360.22 -6.65 -40.28 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -7.10 Total: -2.25 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 0.35 Total: 5.53 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.47 Total: -53.22 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.16 Total: -13.42 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.65 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.63 -6.65 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753870054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.555 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds