Wall clock time and date at job start Tue Mar 31 2020 06:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47232 * 2 1 4 4 C 1.50696 * 109.47552 * 120.00160 * 2 1 3 5 5 O 1.33659 * 125.79953 * 300.33244 * 4 2 1 6 6 C 1.34220 * 110.90430 * 180.12930 * 5 4 2 7 7 C 1.34178 * 109.12703 * 359.57923 * 6 5 4 8 8 C 1.36417 * 125.80207 * 119.99523 * 4 2 1 9 9 C 1.47378 * 127.19362 * 0.02562 * 8 4 2 10 10 O 1.21608 * 119.99930 * 320.86294 * 9 8 4 11 11 N 1.34780 * 120.00017 * 140.85428 * 9 8 4 12 12 C 1.46502 * 119.99740 * 5.18058 * 11 9 8 13 13 C 1.46499 * 120.00003 * 185.17574 * 11 9 8 14 14 C 1.53003 * 109.46743 * 90.00141 * 13 11 9 15 15 N 1.46501 * 109.47115 * 179.97438 * 14 13 11 16 16 C 1.46504 * 119.99934 * 270.00727 * 15 14 13 17 17 C 1.36935 * 119.99976 * 89.99928 * 15 14 13 18 18 H 1.07997 * 119.99653 * 23.77974 * 17 15 14 19 19 C 1.38809 * 120.00094 * 203.77603 * 17 15 14 20 20 N 1.31616 * 120.00022 * 9.85791 * 19 17 15 21 21 Si 1.86800 * 119.99876 * 189.85441 * 19 17 15 22 22 H 1.48504 * 109.47045 * 90.00538 * 21 19 17 23 23 H 1.48502 * 109.47172 * 210.00089 * 21 19 17 24 24 H 1.48498 * 109.47549 * 330.00556 * 21 19 17 25 25 H 1.08999 * 109.46653 * 299.99428 * 1 2 3 26 26 H 1.08996 * 109.47079 * 59.99856 * 1 2 3 27 27 H 1.08998 * 109.46751 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46965 * 240.00263 * 2 1 3 29 29 H 1.09002 * 109.47310 * 300.00523 * 3 2 1 30 30 H 1.09005 * 109.46930 * 60.00242 * 3 2 1 31 31 H 1.08992 * 109.47413 * 179.97438 * 3 2 1 32 32 H 1.07998 * 125.43470 * 179.84954 * 6 5 4 33 33 H 1.07997 * 127.02241 * 180.24361 * 7 6 5 34 34 H 1.09006 * 109.46924 * 84.52244 * 12 11 9 35 35 H 1.09000 * 109.46823 * 204.52162 * 12 11 9 36 36 H 1.08998 * 109.47160 * 324.52274 * 12 11 9 37 37 H 1.08997 * 109.47025 * 210.00472 * 13 11 9 38 38 H 1.09000 * 109.46983 * 330.00557 * 13 11 9 39 39 H 1.08994 * 109.47541 * 300.00493 * 14 13 11 40 40 H 1.09008 * 109.46762 * 60.00269 * 14 13 11 41 41 H 1.08993 * 109.47339 * 94.98106 * 16 15 14 42 42 H 1.09004 * 109.46903 * 214.98592 * 16 15 14 43 43 H 1.08997 * 109.46902 * 334.97693 * 16 15 14 44 44 H 0.96999 * 120.00090 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 1.7770 -0.3599 2.4946 6 6 2.3760 -1.1986 3.3545 7 6 3.0401 -2.1371 2.6627 8 6 2.8200 -1.8242 1.2431 9 6 3.3410 -2.5603 0.0774 10 8 2.6403 -2.7201 -0.9036 11 7 4.5941 -3.0562 0.0986 12 6 5.3980 -2.9634 1.3199 13 6 5.1521 -3.6881 -1.0995 14 6 5.8589 -2.6316 -1.9510 15 7 6.4175 -3.2635 -3.1489 16 6 7.7797 -3.8023 -3.1253 17 6 5.6664 -3.3507 -4.2905 18 1 4.8563 -2.6565 -4.4582 19 6 5.9463 -4.3313 -5.2323 20 7 6.7981 -5.2934 -4.9474 21 14 5.1140 -4.2855 -6.9040 22 1 5.9425 -3.4930 -7.8479 23 1 4.9632 -5.6698 -7.4200 24 1 3.7748 -3.6572 -6.7733 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.1300 1.4425 0.0005 32 1 2.3273 -1.1315 4.4313 33 1 3.6183 -2.9551 3.0663 34 1 5.1596 -3.8004 1.9762 35 1 6.4564 -2.9943 1.0613 36 1 5.1760 -2.0264 1.8306 37 1 5.8676 -4.4560 -0.8055 38 1 4.3482 -4.1430 -1.6783 39 1 5.1435 -1.8637 -2.2450 40 1 6.6628 -2.1767 -1.3722 41 1 7.7452 -4.8674 -2.8962 42 1 8.2455 -3.6551 -4.0997 43 1 8.3617 -3.2852 -2.3625 44 1 6.9934 -5.9788 -5.6053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753870054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:15 Heat of formation + Delta-G solvation = -19.399995 kcal Electronic energy + Delta-G solvation = -24357.749293 eV Core-core repulsion = 20891.014696 eV Total energy + Delta-G solvation = -3466.734597 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.57291 -40.66455 -37.85569 -36.68492 -36.24420 -34.07765 -33.23986 -30.44437 -29.92284 -28.12802 -27.94243 -27.60608 -25.90263 -23.73082 -23.42797 -22.33675 -21.33961 -19.74784 -18.85122 -18.44757 -17.45348 -17.20159 -16.90859 -16.72680 -16.23504 -15.78037 -15.63220 -15.40058 -15.04965 -14.62017 -14.41126 -14.14861 -14.07868 -13.91820 -13.76001 -13.55497 -13.16957 -13.10217 -12.92288 -12.80535 -12.77118 -12.43835 -12.25480 -12.24215 -12.08878 -12.03757 -11.94237 -11.63263 -11.07702 -10.70537 -10.65453 -9.82460 -9.50341 -8.78358 -7.86987 -5.36714 0.44574 1.19894 1.42670 1.44050 1.53552 1.78151 1.97903 2.22308 2.49524 3.27458 3.48675 3.59077 3.76283 3.87677 4.04051 4.08352 4.11813 4.29327 4.34330 4.42484 4.55991 4.58728 4.65893 4.71127 4.73405 4.83215 4.85098 4.86058 4.88833 4.96028 4.96501 5.10376 5.14405 5.24278 5.26002 5.31777 5.44248 5.54279 5.62263 5.71541 6.09083 6.30259 6.43388 7.12608 7.15974 7.82032 8.23846 9.15804 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018803 B = 0.004061 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.736718 B = 6893.114522 C = 7822.031122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.140 4.140 4 C 0.067 3.933 5 O -0.173 6.173 6 C -0.023 4.023 7 C -0.197 4.197 8 C -0.258 4.258 9 C 0.574 3.426 10 O -0.585 6.585 11 N -0.604 5.604 12 C 0.074 3.926 13 C 0.112 3.888 14 C 0.151 3.849 15 N -0.616 5.616 16 C 0.177 3.823 17 C -0.266 4.266 18 H 0.057 0.943 19 C -0.045 4.045 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.277 1.277 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.255 0.745 33 H 0.179 0.821 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.024 0.976 40 H 0.066 0.934 41 H 0.009 0.991 42 H 0.018 0.982 43 H 0.036 0.964 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 11.317 21.246 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.050 4.050 3 C -0.197 4.197 4 C 0.014 3.986 5 O -0.069 6.069 6 C -0.088 4.088 7 C -0.216 4.216 8 C -0.262 4.262 9 C 0.364 3.636 10 O -0.467 6.467 11 N -0.336 5.336 12 C -0.067 4.067 13 C -0.013 4.013 14 C 0.024 3.976 15 N -0.340 5.340 16 C 0.033 3.967 17 C -0.396 4.396 18 H 0.075 0.925 19 C -0.241 4.241 20 N -0.581 5.581 21 Si 0.794 3.206 22 H -0.206 1.206 23 H -0.215 1.215 24 H -0.202 1.202 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.271 0.729 33 H 0.196 0.804 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.084 0.916 41 H 0.027 0.973 42 H 0.037 0.963 43 H 0.054 0.946 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.177 11.337 20.732 24.695 hybrid contribution -0.118 -0.929 -1.322 1.620 sum -7.295 10.408 19.410 23.201 Atomic orbital electron populations 1.21777 0.91943 1.02045 1.03757 1.20026 0.97980 0.96866 0.90119 1.21832 1.01024 0.93025 1.03863 1.22696 0.96000 0.95019 0.84875 1.83744 1.59571 1.49147 1.14461 1.24769 0.96877 0.90317 0.96879 1.23182 1.05798 1.03480 0.89114 1.21165 1.08921 1.01384 0.94772 1.17894 0.81318 0.78301 0.86045 1.90776 1.58715 1.60289 1.36904 1.47882 1.13748 1.57874 1.14087 1.22214 0.95999 1.03309 0.85192 1.22053 0.97200 0.96772 0.85295 1.21115 0.95824 0.93571 0.87126 1.44149 1.12237 1.69206 1.08371 1.20616 0.83280 0.95502 0.97344 1.19415 1.13112 1.10282 0.96803 0.92502 1.25751 1.00248 0.95290 1.02798 1.70191 1.38748 1.14317 1.34804 0.85290 0.78408 0.76710 0.80207 1.20557 1.21524 1.20249 0.90591 0.90223 0.93689 0.90270 0.90280 0.90555 0.93041 0.72929 0.80373 0.90766 0.89859 0.89390 0.90469 0.94197 0.95712 0.91575 0.97263 0.96341 0.94572 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.18 71.98 0.66 -2.27 16 2 C -0.03 -0.80 3.23 -11.54 -0.04 -0.84 16 3 C -0.14 -2.76 9.18 71.98 0.66 -2.10 16 4 C 0.07 1.74 5.88 25.26 0.15 1.89 16 5 O -0.17 -3.51 10.52 4.36 0.05 -3.46 16 6 C -0.02 -0.33 12.03 66.89 0.80 0.47 16 7 C -0.20 -3.66 8.85 23.65 0.21 -3.45 16 8 C -0.26 -7.32 5.42 -18.99 -0.10 -7.43 16 9 C 0.57 21.27 7.34 86.65 0.64 21.91 16 10 O -0.59 -27.39 15.20 -4.06 -0.06 -27.45 16 11 N -0.60 -20.19 2.87 -850.71 -2.44 -22.63 16 12 C 0.07 1.59 9.11 127.77 1.16 2.75 16 13 C 0.11 4.65 5.75 86.38 0.50 5.14 16 14 C 0.15 6.67 6.03 86.38 0.52 7.19 16 15 N -0.62 -32.68 2.92 -726.93 -2.12 -34.81 16 16 C 0.18 8.86 9.01 127.77 1.15 10.01 16 17 C -0.27 -15.72 9.66 84.03 0.81 -14.91 16 18 H 0.06 3.43 7.84 -2.91 -0.02 3.40 16 19 C -0.05 -2.67 5.16 84.86 0.44 -2.23 16 20 N -0.93 -56.56 10.59 21.65 0.23 -56.34 16 21 Si 0.97 47.61 29.56 68.60 2.03 49.64 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 25 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 2.61 6.44 -2.38 -0.02 2.60 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.25 0.84 8.06 -2.91 -0.02 0.82 16 33 H 0.18 2.40 6.70 -2.91 -0.02 2.38 16 34 H 0.07 1.27 7.43 -2.38 -0.02 1.25 16 35 H 0.08 1.62 8.03 -2.39 -0.02 1.60 16 36 H 0.09 1.61 5.94 -2.39 -0.01 1.60 16 37 H 0.08 3.03 8.07 -2.39 -0.02 3.01 16 38 H 0.04 2.03 7.36 -2.39 -0.02 2.01 16 39 H 0.02 1.18 8.04 -2.39 -0.02 1.16 16 40 H 0.07 2.49 7.86 -2.38 -0.02 2.47 16 41 H 0.01 0.49 7.34 -2.39 -0.02 0.47 16 42 H 0.02 0.98 7.30 -2.38 -0.02 0.96 16 43 H 0.04 1.49 7.84 -2.39 -0.02 1.47 16 44 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -77.35 360.22 6.21 -71.14 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.97 Total: 7.76 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 7.56 Total: 16.14 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -4.34 Total: -113.77 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.02 Total: -30.91 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -77.35 6.21 -71.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753870054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.742 kcal (2) G-P(sol) polarization free energy of solvation -77.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds