Wall clock time and date at job start Tue Mar 31 2020 07:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47567 * 5.61891 * 3 2 1 5 5 C 1.53000 * 109.47558 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47276 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46991 * 180.02562 * 6 5 4 8 8 O 1.21274 * 120.00072 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99816 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47282 * 179.97438 * 10 9 7 12 12 O 1.42901 * 110.64338 * 298.31527 * 11 10 9 13 13 C 1.55154 * 110.71880 * 174.97661 * 11 10 9 14 14 C 1.54910 * 101.58031 * 206.13651 * 13 11 10 15 15 N 1.47426 * 104.83209 * 37.01037 * 14 13 11 16 16 C 1.36937 * 125.64487 * 155.84912 * 15 14 13 17 17 H 1.08001 * 119.99600 * 180.02562 * 16 15 14 18 18 C 1.38807 * 120.00345 * 0.02772 * 16 15 14 19 19 N 1.31623 * 120.00215 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99940 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47596 * 89.99890 * 20 18 16 22 22 H 1.48507 * 109.46905 * 210.00085 * 20 18 16 23 23 H 1.48500 * 109.47159 * 329.99420 * 20 18 16 24 24 C 1.47019 * 108.70209 * 335.87354 * 15 14 13 25 25 H 4.44655 * 5.63255 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.47327 * 245.61366 * 3 2 1 27 27 H 1.09001 * 109.46907 * 125.61421 * 3 2 1 28 28 H 1.08998 * 109.47226 * 59.99413 * 4 3 2 29 29 H 1.09002 * 109.47145 * 299.99755 * 4 3 2 30 30 H 1.08998 * 109.47352 * 59.99466 * 5 4 3 31 31 H 1.09002 * 109.46673 * 300.00019 * 5 4 3 32 32 H 1.08998 * 109.47576 * 59.99347 * 6 5 4 33 33 H 1.09002 * 109.47076 * 299.99516 * 6 5 4 34 34 H 0.97006 * 120.00120 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.46837 * 59.99936 * 10 9 7 36 36 H 1.09000 * 109.47332 * 300.00307 * 10 9 7 37 37 H 0.96694 * 114.00195 * 61.68414 * 12 11 10 38 38 H 1.09002 * 111.00945 * 88.06458 * 13 11 10 39 39 H 1.08999 * 111.00353 * 324.20996 * 13 11 10 40 40 H 1.08998 * 110.36709 * 278.17139 * 14 13 11 41 41 H 1.09005 * 110.36466 * 155.84673 * 14 13 11 42 42 H 0.96993 * 120.00387 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.88389 * 120.48020 * 24 15 14 44 44 H 1.09004 * 109.87600 * 241.48978 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4346 -0.1412 5 6 4.6867 -1.4340 -0.1406 6 6 5.1974 -2.8692 -0.2825 7 6 6.7044 -2.8686 -0.2812 8 8 7.3103 -1.8232 -0.1775 9 7 7.3789 -4.0299 -0.3953 10 6 8.8439 -4.0293 -0.3946 11 6 9.3545 -5.4647 -0.5351 12 8 8.9243 -6.2629 0.5694 13 6 10.9005 -5.4871 -0.6643 14 6 11.1282 -6.8052 -1.4457 15 7 10.0048 -6.8785 -2.3975 16 6 10.0028 -7.5728 -3.5778 17 1 9.1260 -7.5634 -4.2083 18 6 11.1276 -8.2887 -3.9638 19 7 12.1964 -8.2999 -3.1955 20 14 11.1251 -9.2353 -5.5742 21 1 11.6155 -8.3562 -6.6660 22 1 12.0145 -10.4186 -5.4543 23 1 9.7435 -9.6839 -5.8826 24 6 8.8871 -6.0823 -1.8699 25 1 -1.0498 -0.0004 0.0002 26 1 3.0092 0.4251 0.9359 27 1 3.0090 0.5993 -0.8355 28 1 2.7936 -1.8591 -1.0772 29 1 2.7937 -2.0333 0.6942 30 1 5.0495 -1.0097 0.7956 31 1 5.0501 -0.8352 -0.9758 32 1 4.8346 -3.2931 -1.2188 33 1 4.8340 -3.4684 0.5525 34 1 6.8943 -4.8662 -0.4778 35 1 9.2065 -3.6050 0.5416 36 1 9.2074 -3.4306 -1.2297 37 1 7.9637 -6.3421 0.6469 38 1 11.3741 -5.5277 0.3166 39 1 11.2575 -4.6288 -1.2335 40 1 11.1063 -7.6574 -0.7665 41 1 12.0771 -6.7698 -1.9809 42 1 12.9825 -8.7998 -3.4654 43 1 8.6303 -5.2913 -2.5745 44 1 8.0221 -6.7238 -1.7014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754748760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:20 Heat of formation + Delta-G solvation = -25.213066 kcal Electronic energy + Delta-G solvation = -23072.485592 eV Core-core repulsion = 19605.498922 eV Total energy + Delta-G solvation = -3466.986671 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.98999 -38.53828 -36.43407 -35.16441 -34.16058 -33.45333 -32.12146 -30.43936 -29.51534 -28.17778 -26.04267 -25.04843 -23.38956 -21.63837 -20.71386 -20.01846 -19.89307 -18.39928 -17.51513 -16.97764 -16.38071 -16.22390 -15.58760 -15.26219 -14.76446 -14.57944 -14.38181 -14.12426 -13.79771 -13.65959 -13.16072 -13.09623 -12.91310 -12.36481 -12.13675 -12.07435 -11.87715 -11.60776 -11.55595 -11.05997 -10.97605 -10.89563 -10.77653 -10.52591 -10.41022 -10.38591 -10.17199 -10.11838 -9.77034 -9.74274 -9.41799 -9.08011 -8.67885 -6.88770 -5.68925 -3.11541 2.48237 2.52447 2.61080 3.12791 3.37595 3.42223 3.44535 4.02146 4.41980 4.44957 4.54381 4.61873 4.63032 4.87467 4.99415 5.02017 5.17319 5.20005 5.37491 5.38658 5.42969 5.46806 5.48616 5.61804 5.66363 5.72163 5.86925 5.93328 5.97575 6.05678 6.21359 6.33703 6.38212 6.47509 6.57675 6.61284 7.29802 7.41806 7.53331 7.58127 7.81499 7.90943 8.17885 8.31605 9.17367 9.77824 10.42050 11.34747 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.002503 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.551823 B =11186.092487 C =11986.687597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.184 4.184 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.142 4.142 7 C 0.511 3.489 8 O -0.543 6.543 9 N -0.728 5.728 10 C 0.105 3.895 11 C 0.105 3.895 12 O -0.543 6.543 13 C -0.128 4.128 14 C 0.156 3.844 15 N -0.600 5.600 16 C -0.226 4.226 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.920 5.920 20 Si 0.916 3.084 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.117 3.883 25 H 0.216 0.784 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.398 0.602 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.364 0.636 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.018 0.982 41 H 0.108 0.892 42 H 0.253 0.747 43 H 0.030 0.970 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.133 12.381 7.913 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.184 4.184 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.142 4.142 6 C -0.182 4.182 7 C 0.298 3.702 8 O -0.420 6.420 9 N -0.381 5.381 10 C -0.020 4.020 11 C 0.064 3.936 12 O -0.348 6.348 13 C -0.167 4.167 14 C 0.031 3.969 15 N -0.326 5.326 16 C -0.354 4.354 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.568 5.568 20 Si 0.747 3.253 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.208 1.208 24 C -0.010 4.010 25 H 0.232 0.768 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.233 0.767 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.210 0.790 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.126 0.874 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -15.872 12.930 7.950 21.961 hybrid contribution -1.146 -0.968 -0.955 1.778 sum -17.018 11.962 6.995 21.946 Atomic orbital electron populations 1.24915 0.96011 1.00934 1.01537 1.23239 0.94678 1.00345 1.00121 1.18775 0.84475 0.98361 1.03589 1.21566 0.95370 0.95494 1.02809 1.21343 0.93824 0.95194 1.03885 1.21688 0.91939 0.99980 1.04568 1.20702 0.90210 0.83484 0.75816 1.90700 1.70637 1.31404 1.49303 1.46046 1.07764 1.09354 1.74894 1.22061 0.79144 0.97844 1.02902 1.22561 0.97474 0.87066 0.86530 1.86625 1.26048 1.72732 1.49351 1.23049 0.90312 1.02245 1.01102 1.21949 0.94769 0.90134 0.90054 1.44417 1.10341 1.56789 1.21051 1.19050 0.99107 1.22421 0.94830 0.90535 1.24808 0.96241 1.00587 0.98956 1.69790 1.04098 1.45789 1.37134 0.86053 0.77263 0.79224 0.82808 1.21532 1.21594 1.20759 1.21922 0.92391 0.94260 0.92445 0.76757 0.89406 0.89370 0.91388 0.91454 0.90897 0.90842 0.88715 0.88835 0.76747 0.90847 0.90392 0.79004 0.91074 0.90581 0.96366 0.87408 0.93620 0.95213 0.95982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.66 19.25 29.55 0.57 -1.09 16 2 C -0.18 -1.56 13.34 -37.12 -0.50 -2.06 16 3 C -0.02 -0.11 5.70 -29.52 -0.17 -0.27 16 4 C -0.11 -0.75 5.17 -26.73 -0.14 -0.89 16 5 C -0.10 -0.83 4.50 -26.73 -0.12 -0.95 16 6 C -0.14 -1.12 5.70 -27.88 -0.16 -1.27 16 7 C 0.51 6.16 7.83 -10.98 -0.09 6.07 16 8 O -0.54 -8.69 15.98 5.56 0.09 -8.60 16 9 N -0.73 -8.48 5.17 -60.30 -0.31 -8.79 16 10 C 0.10 1.51 4.73 -4.04 -0.02 1.49 16 11 C 0.11 1.77 0.92 -88.79 -0.08 1.69 16 12 O -0.54 -8.82 13.10 -35.23 -0.46 -9.29 16 13 C -0.13 -2.44 6.26 -24.58 -0.15 -2.60 16 14 C 0.16 3.80 5.88 -2.53 -0.01 3.79 16 15 N -0.60 -15.18 3.39 -170.07 -0.58 -15.76 16 16 C -0.23 -6.24 10.27 -15.06 -0.15 -6.39 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -26.70 10.09 55.49 0.56 -26.14 16 20 Si 0.92 21.90 29.55 -169.99 -5.02 16.87 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 C 0.12 2.30 6.02 -3.07 -0.02 2.28 16 25 H 0.22 0.94 7.80 -54.10 -0.42 0.52 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.07 0.66 8.10 -51.93 -0.42 0.23 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.40 3.71 7.38 -40.82 -0.30 3.41 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 37 H 0.36 4.30 8.12 45.56 0.37 4.67 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.11 2.93 5.87 -51.93 -0.30 2.63 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 43 H 0.03 0.59 7.82 -51.93 -0.41 0.18 16 44 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -33.95 366.53 -7.85 -41.80 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.51 Total: 4.97 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.14 Total: -0.59 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.33 Total: -50.69 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.37 Total: -17.89 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.95 -7.85 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754748760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.589 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds