Wall clock time and date at job start Tue Mar 31 2020 07:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47567 * 5.61891 * 3 2 1 5 5 C 1.53000 * 109.47558 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47276 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46991 * 180.02562 * 6 5 4 8 8 O 1.21274 * 120.00072 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99816 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47282 * 179.97438 * 10 9 7 12 12 O 1.42901 * 110.64338 * 298.31527 * 11 10 9 13 13 C 1.55154 * 110.71880 * 174.97661 * 11 10 9 14 14 C 1.54910 * 101.58031 * 206.13651 * 13 11 10 15 15 N 1.47426 * 104.83209 * 37.01037 * 14 13 11 16 16 C 1.36937 * 125.64487 * 155.84912 * 15 14 13 17 17 H 1.08001 * 119.99600 * 180.02562 * 16 15 14 18 18 C 1.38807 * 120.00345 * 0.02772 * 16 15 14 19 19 N 1.31623 * 120.00215 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99940 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47596 * 89.99890 * 20 18 16 22 22 H 1.48507 * 109.46905 * 210.00085 * 20 18 16 23 23 H 1.48500 * 109.47159 * 329.99420 * 20 18 16 24 24 C 1.47019 * 108.70209 * 335.87354 * 15 14 13 25 25 H 4.44655 * 5.63255 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.47327 * 245.61366 * 3 2 1 27 27 H 1.09001 * 109.46907 * 125.61421 * 3 2 1 28 28 H 1.08998 * 109.47226 * 59.99413 * 4 3 2 29 29 H 1.09002 * 109.47145 * 299.99755 * 4 3 2 30 30 H 1.08998 * 109.47352 * 59.99466 * 5 4 3 31 31 H 1.09002 * 109.46673 * 300.00019 * 5 4 3 32 32 H 1.08998 * 109.47576 * 59.99347 * 6 5 4 33 33 H 1.09002 * 109.47076 * 299.99516 * 6 5 4 34 34 H 0.97006 * 120.00120 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.46837 * 59.99936 * 10 9 7 36 36 H 1.09000 * 109.47332 * 300.00307 * 10 9 7 37 37 H 0.96694 * 114.00195 * 61.68414 * 12 11 10 38 38 H 1.09002 * 111.00945 * 88.06458 * 13 11 10 39 39 H 1.08999 * 111.00353 * 324.20996 * 13 11 10 40 40 H 1.08998 * 110.36709 * 278.17139 * 14 13 11 41 41 H 1.09005 * 110.36466 * 155.84673 * 14 13 11 42 42 H 0.96993 * 120.00387 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.88389 * 120.48020 * 24 15 14 44 44 H 1.09004 * 109.87600 * 241.48978 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4346 -0.1412 5 6 4.6867 -1.4340 -0.1406 6 6 5.1974 -2.8692 -0.2825 7 6 6.7044 -2.8686 -0.2812 8 8 7.3103 -1.8232 -0.1775 9 7 7.3789 -4.0299 -0.3953 10 6 8.8439 -4.0293 -0.3946 11 6 9.3545 -5.4647 -0.5351 12 8 8.9243 -6.2629 0.5694 13 6 10.9005 -5.4871 -0.6643 14 6 11.1282 -6.8052 -1.4457 15 7 10.0048 -6.8785 -2.3975 16 6 10.0028 -7.5728 -3.5778 17 1 9.1260 -7.5634 -4.2083 18 6 11.1276 -8.2887 -3.9638 19 7 12.1964 -8.2999 -3.1955 20 14 11.1251 -9.2353 -5.5742 21 1 11.6155 -8.3562 -6.6660 22 1 12.0145 -10.4186 -5.4543 23 1 9.7435 -9.6839 -5.8826 24 6 8.8871 -6.0823 -1.8699 25 1 -1.0498 -0.0004 0.0002 26 1 3.0092 0.4251 0.9359 27 1 3.0090 0.5993 -0.8355 28 1 2.7936 -1.8591 -1.0772 29 1 2.7937 -2.0333 0.6942 30 1 5.0495 -1.0097 0.7956 31 1 5.0501 -0.8352 -0.9758 32 1 4.8346 -3.2931 -1.2188 33 1 4.8340 -3.4684 0.5525 34 1 6.8943 -4.8662 -0.4778 35 1 9.2065 -3.6050 0.5416 36 1 9.2074 -3.4306 -1.2297 37 1 7.9637 -6.3421 0.6469 38 1 11.3741 -5.5277 0.3166 39 1 11.2575 -4.6288 -1.2335 40 1 11.1063 -7.6574 -0.7665 41 1 12.0771 -6.7698 -1.9809 42 1 12.9825 -8.7998 -3.4654 43 1 8.6303 -5.2913 -2.5745 44 1 8.0221 -6.7238 -1.7014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754748760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:20 Heat of formation + Delta-G solvation = -49.347264 kcal Electronic energy + Delta-G solvation = -23073.532130 eV Core-core repulsion = 19605.498922 eV Total energy + Delta-G solvation = -3468.033208 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09185 -39.89388 -37.07345 -36.76373 -35.28438 -34.10457 -33.95572 -31.53706 -30.88617 -29.57713 -27.55836 -26.19177 -24.78720 -22.52821 -22.04149 -21.35884 -21.18908 -19.01302 -18.89238 -18.51350 -17.46797 -17.03747 -16.76610 -16.71717 -16.15412 -15.73593 -15.57389 -15.10034 -15.03016 -14.92946 -14.43203 -14.24589 -13.92849 -13.75471 -13.56671 -13.30023 -12.94081 -12.75958 -12.68922 -12.52708 -12.35823 -12.14614 -12.07375 -12.03649 -11.77686 -11.61953 -11.56421 -11.13140 -10.97549 -10.95194 -10.76605 -10.72608 -10.13322 -8.91218 -7.78160 -5.23334 1.46908 1.48931 1.57375 1.68753 1.89737 1.94801 2.18887 2.48567 3.15506 3.31788 3.44418 3.51768 3.70866 3.83610 3.92587 3.95784 4.04028 4.08579 4.44590 4.45533 4.51180 4.59506 4.64630 4.70309 4.79289 4.82127 4.89635 4.94205 4.95594 4.98640 5.09349 5.13447 5.23807 5.35929 5.37271 5.45704 5.49810 5.60376 5.78925 6.28442 6.52308 6.74078 6.80312 7.08602 7.26472 7.75895 8.39581 9.23831 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.002503 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.551823 B =11186.092487 C =11986.687597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.215 4.215 3 C -0.019 4.019 4 C -0.104 4.104 5 C -0.101 4.101 6 C -0.134 4.134 7 C 0.509 3.491 8 O -0.587 6.587 9 N -0.720 5.720 10 C 0.119 3.881 11 C 0.126 3.874 12 O -0.554 6.554 13 C -0.121 4.121 14 C 0.159 3.841 15 N -0.623 5.623 16 C -0.239 4.239 17 H 0.084 0.916 18 C -0.070 4.070 19 N -0.949 5.949 20 Si 0.982 3.018 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.269 1.269 24 C 0.113 3.887 25 H 0.240 0.760 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.412 0.588 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.385 0.615 38 H 0.085 0.915 39 H 0.085 0.915 40 H -0.015 1.015 41 H 0.075 0.925 42 H 0.247 0.753 43 H 0.036 0.964 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.626 12.654 8.053 24.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.215 4.215 3 C -0.055 4.055 4 C -0.142 4.142 5 C -0.139 4.139 6 C -0.173 4.173 7 C 0.298 3.702 8 O -0.467 6.467 9 N -0.373 5.373 10 C -0.006 4.006 11 C 0.084 3.916 12 O -0.362 6.362 13 C -0.160 4.160 14 C 0.034 3.966 15 N -0.349 5.349 16 C -0.368 4.368 17 H 0.102 0.898 18 C -0.262 4.262 19 N -0.599 5.599 20 Si 0.810 3.190 21 H -0.212 1.212 22 H -0.222 1.222 23 H -0.193 1.193 24 C -0.012 4.012 25 H 0.257 0.743 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.249 0.751 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.235 0.765 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.003 0.997 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -18.433 13.198 8.100 24.074 hybrid contribution -0.435 -1.041 -0.961 1.482 sum -18.868 12.157 7.139 23.553 Atomic orbital electron populations 1.25687 0.96978 1.00074 1.00719 1.23749 0.95582 1.01226 1.00970 1.18835 0.83973 0.98741 1.03953 1.21461 0.94111 0.95394 1.03227 1.21281 0.94686 0.95121 1.02794 1.21741 0.88467 1.00406 1.06731 1.21445 0.91817 0.82578 0.74399 1.90689 1.71816 1.32927 1.51244 1.45939 1.06542 1.10231 1.74619 1.21697 0.80947 0.95441 1.02494 1.22185 0.95677 0.88281 0.85411 1.86591 1.28282 1.72702 1.48577 1.22901 0.92681 0.99422 1.01026 1.21656 0.93589 0.91751 0.89574 1.44707 1.12256 1.57188 1.20785 1.19459 0.99256 1.22280 0.95814 0.89832 1.25684 0.96129 1.02078 1.02323 1.70051 1.04485 1.46599 1.38731 0.85021 0.77566 0.77492 0.78882 1.21193 1.22200 1.19339 1.22132 0.91278 0.93984 0.93845 0.74321 0.88969 0.89194 0.91080 0.90756 0.91871 0.92274 0.86728 0.86103 0.75108 0.90737 0.91529 0.76508 0.89683 0.89681 0.99683 0.90750 0.94319 0.94603 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.97 19.25 74.32 1.43 -1.54 16 2 C -0.22 -3.38 13.34 31.12 0.42 -2.97 16 3 C -0.02 -0.23 5.70 28.79 0.16 -0.07 16 4 C -0.10 -1.16 5.17 30.59 0.16 -1.00 16 5 C -0.10 -1.41 4.50 30.59 0.14 -1.28 16 6 C -0.13 -1.70 5.70 29.85 0.17 -1.53 16 7 C 0.51 11.12 7.83 87.66 0.69 11.81 16 8 O -0.59 -18.15 15.98 -3.01 -0.05 -18.20 16 9 N -0.72 -14.82 5.17 -463.07 -2.40 -17.22 16 10 C 0.12 3.20 4.73 86.38 0.41 3.61 16 11 C 0.13 4.03 0.92 -9.61 -0.01 4.02 16 12 O -0.55 -16.71 13.10 -148.98 -1.95 -18.66 16 13 C -0.12 -4.58 6.26 31.99 0.20 -4.38 16 14 C 0.16 7.99 5.88 86.86 0.51 8.50 16 15 N -0.62 -31.63 3.39 -691.99 -2.35 -33.98 16 16 C -0.24 -13.24 10.27 84.03 0.86 -12.38 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 18 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 19 N -0.95 -56.78 10.09 21.65 0.22 -56.56 16 20 Si 0.98 45.34 29.55 68.60 2.03 47.37 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 C 0.11 4.30 6.02 86.73 0.52 4.82 16 25 H 0.24 1.55 7.80 -4.43 -0.03 1.52 16 26 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 31 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 32 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.41 6.22 7.38 -92.70 -0.68 5.53 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 37 H 0.39 7.84 8.12 -74.06 -0.60 7.24 16 38 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.08 3.04 8.04 -2.39 -0.02 3.02 16 40 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.07 4.23 5.87 -2.38 -0.01 4.21 16 42 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 44 H 0.04 1.32 8.06 -2.38 -0.02 1.30 16 Total: -1.00 -75.06 366.53 1.33 -73.73 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.30 Total: 19.37 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 6.13 Total: 4.14 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -4.53 Total: -107.75 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -2.00 Total: -36.85 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -75.06 1.33 -73.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754748760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.381 kcal (2) G-P(sol) polarization free energy of solvation -75.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds